Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.242e-10■■□□□ 12.4
SF3B1O75533 TAF1D-209ENST00000528734 664 ntTSL 21.26□□□□□ -2.212e-10■■□□□ 12.4
SF3B1O75533 GTPBP2-201ENST00000307114 2830 ntTSL 2 BASIC12.07□□□□□ -0.482e-6■■□□□ 12.4
SF3B1O75533 GTPBP2-208ENST00000476510 2816 ntTSL 511.38□□□□□ -0.592e-6■■□□□ 12.4
SF3B1O75533 HNRNPA1-210ENST00000550994 569 ntTSL 48.07□□□□□ -1.124e-11■■□□□ 12.3
SF3B1O75533 HNRNPA1-208ENST00000548688 711 ntTSL 38.05□□□□□ -1.124e-11■■□□□ 12.3
SF3B1O75533 HNRNPA1-207ENST00000547870 920 ntTSL 36.62□□□□□ -1.354e-11■■□□□ 12.3
SF3B1O75533 HNRNPA1-213ENST00000551702 481 ntTSL 33.19□□□□□ -1.94e-11■■□□□ 12.3
SF3B1O75533 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC20.27■□□□□ 0.842e-8■■□□□ 12.3
SF3B1O75533 WSB1-202ENST00000348811 1611 ntTSL 1 (best) BASIC13.07□□□□□ -0.321e-9■■□□□ 12.2
SF3B1O75533 WSB1-201ENST00000262394 5139 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.751e-9■■□□□ 12.2
SF3B1O75533 WSB1-204ENST00000467843 4187 ntTSL 1 (best)8.9□□□□□ -0.981e-9■■□□□ 12.2
SF3B1O75533 SEC31A-229ENST00000509691 491 ntTSL 21.91□□□□□ -2.12e-7■■□□□ 12.2
SF3B1O75533 SEC31A-239ENST00000514362 617 ntTSL 31.77□□□□□ -2.132e-7■■□□□ 12.2
SF3B1O75533 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.121e-7■■□□□ 12.2
SF3B1O75533 PDE3A-202ENST00000542675 685 ntTSL 313.12□□□□□ -0.311e-7■■□□□ 12.2
SF3B1O75533 UBAC1-203ENST00000471163 838 ntTSL 317.86■□□□□ 0.455e-7■■□□□ 12.1
SF3B1O75533 SEC31A-205ENST00000395310 4259 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.294e-7■■□□□ 12.1
SF3B1O75533 SEC31A-202ENST00000311785 3909 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.334e-7■■□□□ 12.1
SF3B1O75533 SEC31A-208ENST00000448323 4255 ntAPPRIS P4 TSL 5 BASIC12.9□□□□□ -0.344e-7■■□□□ 12.1
SF3B1O75533 SEC31A-228ENST00000509142 3861 ntAPPRIS ALT2 TSL 5 BASIC11.21□□□□□ -0.614e-7■■□□□ 12.1
SF3B1O75533 SEC31A-227ENST00000508502 3801 ntAPPRIS ALT1 TSL 1 (best) BASIC10.01□□□□□ -0.814e-7■■□□□ 12.1
SF3B1O75533 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC7.57□□□□□ -1.24e-7■■□□□ 12.1
SF3B1O75533 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.72□□□□□ -1.494e-7■■□□□ 12.1
SF3B1O75533 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.53□□□□□ -1.524e-7■■□□□ 12.1
SF3B1O75533 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.49□□□□□ -1.534e-7■■□□□ 12.1
SF3B1O75533 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.36□□□□□ -1.554e-7■■□□□ 12.1
SF3B1O75533 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC4.78□□□□□ -1.644e-7■■□□□ 12.1
SF3B1O75533 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.38□□□□□ -1.714e-7■■□□□ 12.1
SF3B1O75533 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC4.02□□□□□ -1.774e-7■■□□□ 12.1
SF3B1O75533 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.148e-6■■□□□ 12.1
SF3B1O75533 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.768e-6■■□□□ 12.1
SF3B1O75533 SQSTM1-204ENST00000453046 572 ntTSL 419.74■□□□□ 0.758e-6■■□□□ 12.1
SF3B1O75533 SQSTM1-209ENST00000504627 602 ntTSL 519.74■□□□□ 0.758e-6■■□□□ 12.1
SF3B1O75533 SQSTM1-212ENST00000508284 578 ntTSL 419.74■□□□□ 0.758e-6■■□□□ 12.1
SF3B1O75533 DCP2-207ENST00000513585 1572 ntTSL 217.92■□□□□ 0.468e-6■■□□□ 12.1
SF3B1O75533 SQSTM1-205ENST00000464493 532 ntTSL 415.74■□□□□ 0.118e-6■■□□□ 12.1
SF3B1O75533 RPS14-205ENST00000519690 3119 ntTSL 215.48■□□□□ 0.078e-6■■□□□ 12.1
SF3B1O75533 DCAF8-212ENST00000476033 945 ntTSL 215.35■□□□□ 0.058e-6■■□□□ 12.1
SF3B1O75533 RPS14-206ENST00000519855 398 ntTSL 214.94□□□□□ -0.028e-6■■□□□ 12.1
SF3B1O75533 DDX46-212ENST00000628477 1584 ntTSL 5 BASIC14.53□□□□□ -0.088e-6■■□□□ 12.1
SF3B1O75533 SQSTM1-207ENST00000481335 562 ntTSL 413.39□□□□□ -0.278e-6■■□□□ 12.1
SF3B1O75533 RPS14-207ENST00000521466 592 ntAPPRIS P1 TSL 513.3□□□□□ -0.288e-6■■□□□ 12.1
SF3B1O75533 SQSTM1-203ENST00000422245 628 ntTSL 412.76□□□□□ -0.378e-6■■□□□ 12.1
SF3B1O75533 RPS14-204ENST00000518139 669 ntTSL 312.73□□□□□ -0.378e-6■■□□□ 12.1
SF3B1O75533 DCAF8-214ENST00000481831 1881 ntTSL 212.58□□□□□ -0.48e-6■■□□□ 12.1
SF3B1O75533 RPS14-202ENST00000401695 1599 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.448e-6■■□□□ 12.1
SF3B1O75533 HSP90AA1-207ENST00000557089 694 ntTSL 212.11□□□□□ -0.478e-6■■□□□ 12.1
SF3B1O75533 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.76□□□□□ -1.338e-6■■□□□ 12.1
SF3B1O75533 FUBP1-205ENST00000470287 726 ntTSL 33.35□□□□□ -1.878e-6■■□□□ 12.1
SF3B1O75533 RPL36A-207ENST00000489407 373 ntTSL 22.37□□□□□ -2.038e-6■■□□□ 12.1
SF3B1O75533 DDX46-209ENST00000509255 398 ntTSL 21.76□□□□□ -2.138e-6■■□□□ 12.1
SF3B1O75533 ACTB-203ENST00000417101 472 ntTSL 424.04■■□□□ 1.446e-7■■□□□ 12
SF3B1O75533 PPIL4-201ENST00000253329 2232 ntAPPRIS P1 TSL 1 (best) BASIC10.43□□□□□ -0.745e-7■■□□□ 12
SF3B1O75533 ATP5A1-216ENST00000591267 460 ntTSL 523.35■■□□□ 1.332e-6■■□□□ 12
SF3B1O75533 MARK3-218ENST00000559274 1053 ntTSL 210.22□□□□□ -0.772e-6■■□□□ 12
SF3B1O75533 SRSF2-210ENST00000589919 595 ntTSL 27.01□□□□□ -1.298e-7■■□□□ 11.9
SF3B1O75533 SRSF2-209ENST00000586778 1001 ntTSL 23.86□□□□□ -1.798e-7■■□□□ 11.9
SF3B1O75533 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC28.68■■■□□ 2.183e-6■■□□□ 11.9
SF3B1O75533 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC22.72■■□□□ 1.233e-6■■□□□ 11.9
SF3B1O75533 AP000547.3-203ENST00000591299 751 ntTSL 2 BASIC12.98□□□□□ -0.333e-6■■□□□ 11.9
SF3B1O75533 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.062e-6■■□□□ 11.9
SF3B1O75533 DNAJA1-203ENST00000495015 604 ntTSL 38.56□□□□□ -1.042e-6■■□□□ 11.9
SF3B1O75533 MDM2-229ENST00000543046 432 ntTSL 33.79□□□□□ -1.82e-6■■□□□ 11.9
SF3B1O75533 PTK2-229ENST00000521172 507 ntTSL 53.76□□□□□ -1.812e-6■■□□□ 11.9
SF3B1O75533 ATP5B-203ENST00000547808 705 ntTSL 520.95■□□□□ 0.946e-7■■□□□ 11.9
SF3B1O75533 ATP5B-207ENST00000551020 856 ntTSL 320.62■□□□□ 0.896e-7■■□□□ 11.9
SF3B1O75533 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.386e-7■■□□□ 11.9
SF3B1O75533 ATP5B-202ENST00000547250 840 ntTSL 510.1□□□□□ -0.796e-7■■□□□ 11.9
SF3B1O75533 ATP5B-204ENST00000548474 449 ntTSL 36.79□□□□□ -1.326e-7■■□□□ 11.9
SF3B1O75533 DDX3X-210ENST00000615313 568 ntTSL 421.1■□□□□ 0.973e-6■■□□□ 11.9
SF3B1O75533 DDX3X-206ENST00000542215 1592 ntTSL 219.97■□□□□ 0.793e-6■■□□□ 11.9
SF3B1O75533 DDX3X-208ENST00000611546 442 ntTSL 518.42■□□□□ 0.543e-6■■□□□ 11.9
SF3B1O75533 DDX3X-213ENST00000622198 409 ntTSL 418.42■□□□□ 0.543e-6■■□□□ 11.9
SF3B1O75533 DDX3X-211ENST00000615742 485 ntTSL 49.11□□□□□ -0.953e-6■■□□□ 11.9
SF3B1O75533 DDX3X-222ENST00000631641 583 ntTSL 39.11□□□□□ -0.953e-6■■□□□ 11.9
SF3B1O75533 OAZ1-203ENST00000586054 2832 nt21.7■■□□□ 1.064e-9■■□□□ 11.9
SF3B1O75533 SF3B1-208ENST00000470268 2003 ntTSL 25□□□□□ -1.615e-9■■□□□ 11.8
SF3B1O75533 PIM1-201ENST00000373509 2650 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.366e-7■■□□□ 11.8
SF3B1O75533 OAZ1-208ENST00000592727 726 ntTSL 216.56■□□□□ 0.244e-12■■□□□ 11.7
SF3B1O75533 SEC31A-213ENST00000503937 1564 ntTSL 1 (best)8.03□□□□□ -1.121e-7■■□□□ 11.7
SF3B1O75533 SEC31A-241ENST00000515749 829 ntTSL 27.84□□□□□ -1.151e-7■■□□□ 11.7
SF3B1O75533 SEC31A-232ENST00000511338 657 ntTSL 53.95□□□□□ -1.781e-7■■□□□ 11.7
SF3B1O75533 SRSF2-206ENST00000582449 1518 ntTSL 220.67■□□□□ 0.98e-7■■□□□ 11.7
SF3B1O75533 DDX5-214ENST00000580026 1171 ntTSL 211.15□□□□□ -0.621e-6■■□□□ 11.7
SF3B1O75533 DDX5-216ENST00000581237 592 ntTSL 57.69□□□□□ -1.181e-6■■□□□ 11.7
SF3B1O75533 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.3■□□□□ 0.049e-7■■□□□ 11.6
SF3B1O75533 LDHA-205ENST00000422447 2416 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.329e-7■■□□□ 11.6
SF3B1O75533 LDHA-215ENST00000537296 1511 ntTSL 211.81□□□□□ -0.529e-7■■□□□ 11.6
SF3B1O75533 LDHA-216ENST00000538451 1345 ntTSL 210.75□□□□□ -0.699e-7■■□□□ 11.6
SF3B1O75533 LDHA-220ENST00000542179 1288 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.859e-7■■□□□ 11.6
SF3B1O75533 LDHA-218ENST00000540430 2305 ntTSL 2 BASIC9.65□□□□□ -0.879e-7■■□□□ 11.6
SF3B1O75533 LDHA-201ENST00000227157 1887 ntTSL 3 BASIC8.66□□□□□ -1.029e-7■■□□□ 11.6
SF3B1O75533 LDHA-210ENST00000486690 664 ntTSL 58.05□□□□□ -1.129e-7■■□□□ 11.6
SF3B1O75533 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC7.94□□□□□ -1.149e-7■■□□□ 11.6
SF3B1O75533 LDHA-206ENST00000430553 1310 ntTSL 2 BASIC7.62□□□□□ -1.199e-7■■□□□ 11.6
SF3B1O75533 LDHA-219ENST00000541097 582 ntTSL 37.45□□□□□ -1.229e-7■■□□□ 11.6
SF3B1O75533 LDHA-223ENST00000545215 1340 ntTSL 1 (best)7.29□□□□□ -1.249e-7■■□□□ 11.6
SF3B1O75533 LDHA-202ENST00000375710 2169 ntTSL 27.27□□□□□ -1.259e-7■■□□□ 11.6
SF3B1O75533 HNRNPD-209ENST00000513584 1240 ntTSL 225.95■■□□□ 1.753e-6■■□□□ 11.5
Retrieved 100 of 46,956 protein–RNA pairs in 3178.5 ms