RNA–Protein interactions for RNA: ENST00000538451.1

LDHA-216, Transcript of lactate dehydrogenase A, humanhuman

TSL 2

Gene LDHA, Length 1,345 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-216ENST00000538451 NISCHQ9Y2I1 1504 aa23.16■■□□□ 1.3
LDHA-216ENST00000538451 AEBP2Q6ZN18 517 aaPredicted RBP23.11■■□□□ 1.29
LDHA-216ENST00000538451 CHIC1Q5VXU3 224 aa21.6■■□□□ 1.05
LDHA-216ENST00000538451 CCDC180Q9P1Z9 1646 aa20.42■□□□□ 0.86
LDHA-216ENST00000538451 ABCC9O60706 1549 aa20.1■□□□□ 0.81
LDHA-216ENST00000538451 SENP3Q9H4L4 574 aaPredicted RBP19.7■□□□□ 0.74
LDHA-216ENST00000538451 PHF23Q9BUL5 403 aaPredicted RBP19.39■□□□□ 0.69
LDHA-216ENST00000538451 ZCCHC6Q5VYS8 1495 aaKnown RBP19.39■□□□□ 0.69
LDHA-216ENST00000538451 RB1CC1Q8TDY2 1594 aa19.3■□□□□ 0.68
LDHA-216ENST00000538451 DCAF8L2P0C7V8 631 aa19.26■□□□□ 0.67
LDHA-216ENST00000538451 NACADO15069 1562 aa19.25■□□□□ 0.67
LDHA-216ENST00000538451 DCAF1Q9Y4B6 1507 aa19.22■□□□□ 0.67
LDHA-216ENST00000538451 MYO15BQ96JP2 1530 aa19.12■□□□□ 0.65
LDHA-216ENST00000538451 UNC13AQ9UPW8 1703 aa18.77■□□□□ 0.6
LDHA-216ENST00000538451 PABPN1Q86U42 306 aaKnown RBP eCLIP18.76■□□□□ 0.593e-14■□□□□ 10.1
LDHA-216ENST00000538451 BICRAQ9NZM4 1560 aa18.66■□□□□ 0.58
LDHA-216ENST00000538451 SHROOM4Q9ULL8 1493 aa18.62■□□□□ 0.57
LDHA-216ENST00000538451 SCRIBQ14160 1630 aa18.6■□□□□ 0.57
LDHA-216ENST00000538451 DNAJC5BQ9UF47 199 aa18.53■□□□□ 0.56
LDHA-216ENST00000538451 FOXD1Q16676 465 aa18.43■□□□□ 0.54
LDHA-216ENST00000538451 EIF4G1Q04637 1599 aaKnown RBP18.22■□□□□ 0.51
LDHA-216ENST00000538451 CC2D2AQ9P2K1 1620 aa18.17■□□□□ 0.5
LDHA-216ENST00000538451 CECR2Q9BXF3 1484 aa18.09■□□□□ 0.49
LDHA-216ENST00000538451 BAZ1AQ9NRL2 1556 aaPredicted RBP17.97■□□□□ 0.47
LDHA-216ENST00000538451 PLPPR3Q6T4P5 718 aa17.88■□□□□ 0.45
LDHA-216ENST00000538451 SUPT5HO00267 1087 aaKnown RBP17.87■□□□□ 0.45
LDHA-216ENST00000538451 SMARCA4P51532 1647 aa17.85■□□□□ 0.45
LDHA-216ENST00000538451 RSF1Q96T23 1441 aaPredicted RBP17.84■□□□□ 0.45
LDHA-216ENST00000538451 MROH2BQ7Z745 1585 aa17.81■□□□□ 0.44
LDHA-216ENST00000538451 NCAPD3P42695 1498 aa17.76■□□□□ 0.43
LDHA-216ENST00000538451 ATAD2BQ9ULI0 1458 aa17.73■□□□□ 0.43
LDHA-216ENST00000538451 SMARCA2P51531 1590 aa17.73■□□□□ 0.43
LDHA-216ENST00000538451 PEG3Q9GZU2 1588 aa17.67■□□□□ 0.42
LDHA-216ENST00000538451 HMGXB3Q12766 1538 aa17.65■□□□□ 0.42
LDHA-216ENST00000538451 WIZO95785 1651 aa17.65■□□□□ 0.42
LDHA-216ENST00000538451 BAZ1BQ9UIG0 1483 aaKnown RBP17.6■□□□□ 0.41
LDHA-216ENST00000538451 TOP2AP11388 1531 aaKnown RBP17.55■□□□□ 0.4
LDHA-216ENST00000538451 POTEDQ86YR6 584 aa17.49■□□□□ 0.39
LDHA-216ENST00000538451 ERCC6Q03468 1493 aa17.38■□□□□ 0.37
LDHA-216ENST00000538451 NESP48681 1621 aa17.33■□□□□ 0.36
LDHA-216ENST00000538451 MSH5O43196 834 aa17.32■□□□□ 0.36
LDHA-216ENST00000538451 CCDC88BA6NC98 1476 aa17.32■□□□□ 0.36
LDHA-216ENST00000538451 LAMC3Q9Y6N6 1575 aa17.32■□□□□ 0.36
LDHA-216ENST00000538451 CADPSQ9ULU8 1353 aa17.24■□□□□ 0.35
LDHA-216ENST00000538451 CUX2O14529 1486 aa17.23■□□□□ 0.35
LDHA-216ENST00000538451 PDS5BQ9NTI5 1447 aa17.23■□□□□ 0.35
LDHA-216ENST00000538451 PIAS4Q8N2W9 510 aaPredicted RBP17.12■□□□□ 0.33
LDHA-216ENST00000538451 KIF21AQ7Z4S6 1674 aa17.11■□□□□ 0.33
LDHA-216ENST00000538451 THOC2Q8NI27 1593 aaKnown RBP17.11■□□□□ 0.33
LDHA-216ENST00000538451 CFTRP13569 1480 aa17.1■□□□□ 0.33
LDHA-216ENST00000538451 CEP164Q9UPV0 1460 aa17.04■□□□□ 0.32
LDHA-216ENST00000538451 FANCD2Q9BXW9 1451 aa17.04■□□□□ 0.32
LDHA-216ENST00000538451 MRC2Q9UBG0 1479 aa17.04■□□□□ 0.32
LDHA-216ENST00000538451 PPP6R1Q9UPN7 881 aa16.99■□□□□ 0.31
LDHA-216ENST00000538451 PRDM2Q13029 1718 aa16.97■□□□□ 0.31
LDHA-216ENST00000538451 WDR62O43379 1518 aa16.97■□□□□ 0.31
LDHA-216ENST00000538451 TRIM41Q8WV44 630 aa16.92■□□□□ 0.3
LDHA-216ENST00000538451 ADRA2BP18089 450 aa16.91■□□□□ 0.3
LDHA-216ENST00000538451 WRNQ14191 1432 aaPredicted RBP eCLIP16.87■□□□□ 0.29
LDHA-216ENST00000538451 DNAJC5Q9H3Z4 198 aa16.85■□□□□ 0.29
LDHA-216ENST00000538451 URB2Q14146 1524 aaKnown RBP16.84■□□□□ 0.29
LDHA-216ENST00000538451 ABCC8Q09428 1581 aa16.81■□□□□ 0.28
LDHA-216ENST00000538451 TOPBP1Q92547 1522 aa16.73■□□□□ 0.27
LDHA-216ENST00000538451 TOP2BQ02880 1626 aa16.73■□□□□ 0.27
LDHA-216ENST00000538451 DNMBPQ6XZF7 1577 aa16.71■□□□□ 0.27
LDHA-216ENST00000538451 BIVM-ERCC5R4GMW8 1640 aa16.7■□□□□ 0.26
LDHA-216ENST00000538451 SYNJ1O43426 1573 aa16.69■□□□□ 0.26
LDHA-216ENST00000538451 CUX1P39880 1505 aa16.69■□□□□ 0.26
LDHA-216ENST00000538451 IFT140Q96RY7 1462 aa16.69■□□□□ 0.26
LDHA-216ENST00000538451 KCNA4P22459 653 aa16.62■□□□□ 0.25
LDHA-216ENST00000538451 EEA1Q15075 1411 aa16.6■□□□□ 0.25
LDHA-216ENST00000538451 POLA1P09884 1462 aaPredicted RBP16.59■□□□□ 0.25
LDHA-216ENST00000538451 FGD5Q6ZNL6 1462 aa16.59■□□□□ 0.25
LDHA-216ENST00000538451 ZNF608Q9ULD9 1512 aaPredicted RBP16.58■□□□□ 0.24
LDHA-216ENST00000538451 EHMT2Q96KQ7 1210 aa16.58■□□□□ 0.24
LDHA-216ENST00000538451 SOGA1O94964 1423 aa16.55■□□□□ 0.24
LDHA-216ENST00000538451 TARBP1Q13395 1621 aaKnown RBP16.54■□□□□ 0.24
LDHA-216ENST00000538451 EIF4G3O43432 1585 aaKnown RBP16.52■□□□□ 0.24
LDHA-216ENST00000538451 KIF27Q86VH2 1401 aa16.52■□□□□ 0.24
LDHA-216ENST00000538451 OSCARQ8IYS5 282 aa16.51■□□□□ 0.23
LDHA-216ENST00000538451 RAD54L2Q9Y4B4 1467 aa16.49■□□□□ 0.23
LDHA-216ENST00000538451 AQRO60306 1485 aaKnown RBP eCLIP16.49■□□□□ 0.232e-8■■■■□ 26.4
LDHA-216ENST00000538451 FAM9AQ8IZU1 332 aaPredicted RBP16.48■□□□□ 0.23
LDHA-216ENST00000538451 ABCA10Q8WWZ4 1543 aa16.47■□□□□ 0.23
LDHA-216ENST00000538451 CSRNP3Q8WYN3 585 aa16.45■□□□□ 0.22
LDHA-216ENST00000538451 WDR97A6NE52 1622 aa16.45■□□□□ 0.22
LDHA-216ENST00000538451 TDRD9Q8NDG6 1382 aaKnown RBP16.44■□□□□ 0.22
LDHA-216ENST00000538451 GRIN2BQ13224 1484 aa16.36■□□□□ 0.21
LDHA-216ENST00000538451 GAPVD1Q14C86 1478 aa16.36■□□□□ 0.21
LDHA-216ENST00000538451 FBLN2P98095 1184 aa16.36■□□□□ 0.21
LDHA-216ENST00000538451 RUSC2Q8N2Y8 1516 aa16.36■□□□□ 0.21
LDHA-216ENST00000538451 SNAPC4Q5SXM2 1469 aa16.34■□□□□ 0.21
LDHA-216ENST00000538451 MAGI1Q96QZ7 1491 aaPredicted RBP16.34■□□□□ 0.21
LDHA-216ENST00000538451 ERICH3Q5RHP9 1530 aa16.32■□□□□ 0.2
LDHA-216ENST00000538451 CHD1O14646 1710 aa16.31■□□□□ 0.2
LDHA-216ENST00000538451 ABCA5Q8WWZ7 1642 aa16.31■□□□□ 0.2
LDHA-216ENST00000538451 IGF1RP08069 1367 aa16.3■□□□□ 0.2
LDHA-216ENST00000538451 CHMP7Q8WUX9 453 aaPredicted RBP16.3■□□□□ 0.2
LDHA-216ENST00000538451 KIF21BO75037 1637 aa16.28■□□□□ 0.2
LDHA-216ENST00000538451 CUL7Q14999 1698 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms