RNA–Protein interactions for RNA: ENST00000227157.8

LDHA-201, Transcript of lactate dehydrogenase A, humanhuman

TSL 3 BASIC

Gene LDHA, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-201ENST00000227157 NISCHQ9Y2I1 1504 aa19.24■□□□□ 0.67
LDHA-201ENST00000227157 CCDC180Q9P1Z9 1646 aa16.99■□□□□ 0.31
LDHA-201ENST00000227157 ABCC9O60706 1549 aa16.61■□□□□ 0.25
LDHA-201ENST00000227157 DCAF8L2P0C7V8 631 aa16.16■□□□□ 0.18
LDHA-201ENST00000227157 ZCCHC6Q5VYS8 1495 aaKnown RBP16.06■□□□□ 0.16
LDHA-201ENST00000227157 AEBP2Q6ZN18 517 aaPredicted RBP15.94■□□□□ 0.14
LDHA-201ENST00000227157 RB1CC1Q8TDY2 1594 aa15.92■□□□□ 0.14
LDHA-201ENST00000227157 NACADO15069 1562 aa15.9■□□□□ 0.14
LDHA-201ENST00000227157 DCAF1Q9Y4B6 1507 aa15.81■□□□□ 0.12
LDHA-201ENST00000227157 MYO15BQ96JP2 1530 aa15.77■□□□□ 0.12
LDHA-201ENST00000227157 UNC13AQ9UPW8 1703 aa15.74■□□□□ 0.11
LDHA-201ENST00000227157 SCRIBQ14160 1630 aa15.67■□□□□ 0.1
LDHA-201ENST00000227157 PABPN1Q86U42 306 aaKnown RBP eCLIP15.58■□□□□ 0.083e-14■□□□□ 10.1
LDHA-201ENST00000227157 BICRAQ9NZM4 1560 aa15.51■□□□□ 0.07
LDHA-201ENST00000227157 SHROOM4Q9ULL8 1493 aa15.51■□□□□ 0.07
LDHA-201ENST00000227157 DNAJC5BQ9UF47 199 aa15.11■□□□□ 0.01
LDHA-201ENST00000227157 EIF4G1Q04637 1599 aaKnown RBP15.07■□□□□ 0
LDHA-201ENST00000227157 CECR2Q9BXF3 1484 aa15.07■□□□□ 0
LDHA-201ENST00000227157 CC2D2AQ9P2K1 1620 aa15□□□□□ -0.01
LDHA-201ENST00000227157 CHIC1Q5VXU3 224 aa14.99□□□□□ -0.01
LDHA-201ENST00000227157 SMARCA4P51532 1647 aa14.93□□□□□ -0.02
LDHA-201ENST00000227157 MROH2BQ7Z745 1585 aa14.9□□□□□ -0.02
LDHA-201ENST00000227157 BAZ1AQ9NRL2 1556 aaPredicted RBP14.88□□□□□ -0.03
LDHA-201ENST00000227157 WIZO95785 1651 aa14.8□□□□□ -0.04
LDHA-201ENST00000227157 ATAD2BQ9ULI0 1458 aa14.77□□□□□ -0.05
LDHA-201ENST00000227157 RSF1Q96T23 1441 aaPredicted RBP14.74□□□□□ -0.05
LDHA-201ENST00000227157 SMARCA2P51531 1590 aa14.71□□□□□ -0.05
LDHA-201ENST00000227157 PEG3Q9GZU2 1588 aa14.69□□□□□ -0.06
LDHA-201ENST00000227157 NCAPD3P42695 1498 aa14.67□□□□□ -0.06
LDHA-201ENST00000227157 BAZ1BQ9UIG0 1483 aaKnown RBP14.67□□□□□ -0.06
LDHA-201ENST00000227157 SUPT5HO00267 1087 aaKnown RBP14.63□□□□□ -0.07
LDHA-201ENST00000227157 HMGXB3Q12766 1538 aa14.63□□□□□ -0.07
LDHA-201ENST00000227157 TOP2AP11388 1531 aaKnown RBP14.54□□□□□ -0.08
LDHA-201ENST00000227157 POTEDQ86YR6 584 aa14.5□□□□□ -0.09
LDHA-201ENST00000227157 NESP48681 1621 aa14.45□□□□□ -0.1
LDHA-201ENST00000227157 CCDC88BA6NC98 1476 aa14.4□□□□□ -0.1
LDHA-201ENST00000227157 KIF21AQ7Z4S6 1674 aa14.29□□□□□ -0.12
LDHA-201ENST00000227157 LAMC3Q9Y6N6 1575 aa14.28□□□□□ -0.12
LDHA-201ENST00000227157 CADPSQ9ULU8 1353 aa14.28□□□□□ -0.12
LDHA-201ENST00000227157 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
LDHA-201ENST00000227157 CFTRP13569 1480 aa14.24□□□□□ -0.13
LDHA-201ENST00000227157 PRDM2Q13029 1718 aa14.22□□□□□ -0.13
LDHA-201ENST00000227157 FANCD2Q9BXW9 1451 aa14.17□□□□□ -0.14
LDHA-201ENST00000227157 PDS5BQ9NTI5 1447 aa14.16□□□□□ -0.14
LDHA-201ENST00000227157 THOC2Q8NI27 1593 aaKnown RBP14.12□□□□□ -0.15
LDHA-201ENST00000227157 CEP164Q9UPV0 1460 aa14.12□□□□□ -0.15
LDHA-201ENST00000227157 MRC2Q9UBG0 1479 aa14.05□□□□□ -0.16
LDHA-201ENST00000227157 URB2Q14146 1524 aaKnown RBP14.05□□□□□ -0.16
LDHA-201ENST00000227157 ABCC8Q09428 1581 aa14.03□□□□□ -0.16
LDHA-201ENST00000227157 WDR62O43379 1518 aa14□□□□□ -0.17
LDHA-201ENST00000227157 TOPBP1Q92547 1522 aa13.96□□□□□ -0.17
LDHA-201ENST00000227157 CUX1P39880 1505 aa13.95□□□□□ -0.18
LDHA-201ENST00000227157 DNMBPQ6XZF7 1577 aa13.94□□□□□ -0.18
LDHA-201ENST00000227157 SYNJ1O43426 1573 aa13.93□□□□□ -0.18
LDHA-201ENST00000227157 CUX2O14529 1486 aa13.92□□□□□ -0.18
LDHA-201ENST00000227157 SENP3Q9H4L4 574 aaPredicted RBP13.89□□□□□ -0.19
LDHA-201ENST00000227157 WRNQ14191 1432 aaPredicted RBP eCLIP13.89□□□□□ -0.19
LDHA-201ENST00000227157 FGD5Q6ZNL6 1462 aa13.88□□□□□ -0.19
LDHA-201ENST00000227157 POLA1P09884 1462 aaPredicted RBP13.87□□□□□ -0.19
LDHA-201ENST00000227157 RAD54L2Q9Y4B4 1467 aa13.87□□□□□ -0.19
LDHA-201ENST00000227157 TOP2BQ02880 1626 aa13.85□□□□□ -0.19
LDHA-201ENST00000227157 BIVM-ERCC5R4GMW8 1640 aa13.85□□□□□ -0.19
LDHA-201ENST00000227157 ZNF608Q9ULD9 1512 aaPredicted RBP13.82□□□□□ -0.2
LDHA-201ENST00000227157 TARBP1Q13395 1621 aaKnown RBP13.81□□□□□ -0.2
LDHA-201ENST00000227157 SOGA1O94964 1423 aa13.79□□□□□ -0.2
LDHA-201ENST00000227157 IFT140Q96RY7 1462 aa13.77□□□□□ -0.2
LDHA-201ENST00000227157 AQRO60306 1485 aaKnown RBP eCLIP13.76□□□□□ -0.211e-8■■■■□ 22.9
LDHA-201ENST00000227157 WDR97A6NE52 1622 aa13.76□□□□□ -0.21
LDHA-201ENST00000227157 EIF4G3O43432 1585 aaKnown RBP13.76□□□□□ -0.21
LDHA-201ENST00000227157 TDRD9Q8NDG6 1382 aaKnown RBP13.75□□□□□ -0.21
LDHA-201ENST00000227157 TRIM41Q8WV44 630 aa13.71□□□□□ -0.21
LDHA-201ENST00000227157 ABCA10Q8WWZ4 1543 aa13.68□□□□□ -0.22
LDHA-201ENST00000227157 PBRM1Q86U86 1689 aa13.67□□□□□ -0.22
LDHA-201ENST00000227157 ABCA5Q8WWZ7 1642 aa13.66□□□□□ -0.22
LDHA-201ENST00000227157 RUSC2Q8N2Y8 1516 aa13.64□□□□□ -0.23
LDHA-201ENST00000227157 GAPVD1Q14C86 1478 aa13.64□□□□□ -0.23
LDHA-201ENST00000227157 SNAPC4Q5SXM2 1469 aa13.61□□□□□ -0.23
LDHA-201ENST00000227157 MYT1Q01538 1121 aa13.61□□□□□ -0.23
LDHA-201ENST00000227157 CHD1O14646 1710 aa13.6□□□□□ -0.23
LDHA-201ENST00000227157 FBLN2P98095 1184 aa13.59□□□□□ -0.23
LDHA-201ENST00000227157 GRIN2BQ13224 1484 aa13.58□□□□□ -0.24
LDHA-201ENST00000227157 FAM9AQ8IZU1 332 aaPredicted RBP13.57□□□□□ -0.24
LDHA-201ENST00000227157 KIF27Q86VH2 1401 aa13.55□□□□□ -0.24
LDHA-201ENST00000227157 ADAMTS12P58397 1594 aa13.52□□□□□ -0.25
LDHA-201ENST00000227157 PELP1Q8IZL8 1130 aaKnown RBP13.51□□□□□ -0.25
LDHA-201ENST00000227157 MAGI1Q96QZ7 1491 aaPredicted RBP13.51□□□□□ -0.25
LDHA-201ENST00000227157 ERICH3Q5RHP9 1530 aa13.5□□□□□ -0.25
LDHA-201ENST00000227157 PHF23Q9BUL5 403 aaPredicted RBP13.5□□□□□ -0.25
LDHA-201ENST00000227157 IGF1RP08069 1367 aa13.49□□□□□ -0.25
LDHA-201ENST00000227157 CHMP7Q8WUX9 453 aaPredicted RBP13.49□□□□□ -0.25
LDHA-201ENST00000227157 EHMT2Q96KQ7 1210 aa13.48□□□□□ -0.25
LDHA-201ENST00000227157 SYNJ2O15056 1496 aa13.48□□□□□ -0.25
LDHA-201ENST00000227157 DNAJC5Q9H3Z4 198 aa13.46□□□□□ -0.26
LDHA-201ENST00000227157 CUL7Q14999 1698 aa13.45□□□□□ -0.26
LDHA-201ENST00000227157 FHAD1B1AJZ9 1412 aa13.44□□□□□ -0.26
LDHA-201ENST00000227157 GRIN2AQ12879 1464 aa13.44□□□□□ -0.26
LDHA-201ENST00000227157 OSCARQ8IYS5 282 aa13.43□□□□□ -0.26
LDHA-201ENST00000227157 CARMIL1Q5VZK9 1371 aa13.42□□□□□ -0.26
LDHA-201ENST00000227157 CEP170Q5SW79 1584 aa13.42□□□□□ -0.26
LDHA-201ENST00000227157 CSRNP3Q8WYN3 585 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms