RNA–Protein interactions for RNA: ENST00000545215.5

LDHA-223, Transcript of lactate dehydrogenase A, humanhuman

TSL 1 (best)

Gene LDHA, Length 1,340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDHA-223ENST00000545215 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
LDHA-223ENST00000545215 AEBP2Q6ZN18 517 aaPredicted RBP20.13■□□□□ 0.81
LDHA-223ENST00000545215 PHF23Q9BUL5 403 aaPredicted RBP17.98■□□□□ 0.47
LDHA-223ENST00000545215 DNAJC5BQ9UF47 199 aa17.92■□□□□ 0.46
LDHA-223ENST00000545215 ABCC9O60706 1549 aa17.73■□□□□ 0.43
LDHA-223ENST00000545215 NISCHQ9Y2I1 1504 aa17.72■□□□□ 0.43
LDHA-223ENST00000545215 DNAJC5Q9H3Z4 198 aa17.44■□□□□ 0.38
LDHA-223ENST00000545215 SENP3Q9H4L4 574 aaPredicted RBP16.93■□□□□ 0.3
LDHA-223ENST00000545215 PLPPR3Q6T4P5 718 aa16.78■□□□□ 0.28
LDHA-223ENST00000545215 CCDC180Q9P1Z9 1646 aa16.43■□□□□ 0.22
LDHA-223ENST00000545215 PABPN1Q86U42 306 aaKnown RBP eCLIP16.34■□□□□ 0.213e-14■□□□□ 10.1
LDHA-223ENST00000545215 RB1CC1Q8TDY2 1594 aa16.3■□□□□ 0.2
LDHA-223ENST00000545215 CECR2Q9BXF3 1484 aa16.14■□□□□ 0.17
LDHA-223ENST00000545215 TRIM41Q8WV44 630 aa16.03■□□□□ 0.16
LDHA-223ENST00000545215 CC2D2AQ9P2K1 1620 aa15.95■□□□□ 0.14
LDHA-223ENST00000545215 BICRAQ9NZM4 1560 aa15.9■□□□□ 0.14
LDHA-223ENST00000545215 UNC13AQ9UPW8 1703 aa15.89■□□□□ 0.13
LDHA-223ENST00000545215 NACADO15069 1562 aa15.88■□□□□ 0.13
LDHA-223ENST00000545215 CUX2O14529 1486 aa15.86■□□□□ 0.13
LDHA-223ENST00000545215 ADRA2BP18089 450 aa15.73■□□□□ 0.11
LDHA-223ENST00000545215 FOXD1Q16676 465 aa15.66■□□□□ 0.1
LDHA-223ENST00000545215 PPP6R1Q9UPN7 881 aa15.62■□□□□ 0.09
LDHA-223ENST00000545215 EIF4G1Q04637 1599 aaKnown RBP15.6■□□□□ 0.09
LDHA-223ENST00000545215 SHROOM4Q9ULL8 1493 aa15.55■□□□□ 0.08
LDHA-223ENST00000545215 DCAF8L2P0C7V8 631 aa15.52■□□□□ 0.08
LDHA-223ENST00000545215 ERCC6Q03468 1493 aa15.4■□□□□ 0.06
LDHA-223ENST00000545215 KCNA4P22459 653 aa15.35■□□□□ 0.05
LDHA-223ENST00000545215 MYO15BQ96JP2 1530 aa15.27■□□□□ 0.03
LDHA-223ENST00000545215 ILDR1Q86SU0 546 aaPredicted RBP15.13■□□□□ 0.01
LDHA-223ENST00000545215 EHMT2Q96KQ7 1210 aa15.08■□□□□ 0
LDHA-223ENST00000545215 OSCARQ8IYS5 282 aa14.96□□□□□ -0.01
LDHA-223ENST00000545215 THOC2Q8NI27 1593 aaKnown RBP14.96□□□□□ -0.02
LDHA-223ENST00000545215 SCRIBQ14160 1630 aa14.95□□□□□ -0.02
LDHA-223ENST00000545215 TRHP20396 242 aaPredicted RBP14.92□□□□□ -0.02
LDHA-223ENST00000545215 PIAS4Q8N2W9 510 aaPredicted RBP14.9□□□□□ -0.02
LDHA-223ENST00000545215 PPP4R3CPQ6ZMV5 832 aa14.89□□□□□ -0.03
LDHA-223ENST00000545215 NESP48681 1621 aa14.87□□□□□ -0.03
LDHA-223ENST00000545215 RIMBP3CA6NJZ7 1639 aa14.83□□□□□ -0.04
LDHA-223ENST00000545215 RIMBP3BA6NNM3 1639 aa14.83□□□□□ -0.04
LDHA-223ENST00000545215 RIMBP3Q9UFD9 1639 aa14.83□□□□□ -0.04
LDHA-223ENST00000545215 BAZ1AQ9NRL2 1556 aaPredicted RBP14.82□□□□□ -0.04
LDHA-223ENST00000545215 NCAPD3P42695 1498 aa14.72□□□□□ -0.05
LDHA-223ENST00000545215 SLC4A1APQ9BWU0 796 aaKnown RBP14.71□□□□□ -0.05
LDHA-223ENST00000545215 SMARCA2P51531 1590 aa14.69□□□□□ -0.06
LDHA-223ENST00000545215 NCBP3Q53F19 620 aaKnown RBP14.67□□□□□ -0.06
LDHA-223ENST00000545215 CYB5RLQ6IPT4 315 aa14.67□□□□□ -0.06
LDHA-223ENST00000545215 ARHGEF11O15085 1522 aa14.66□□□□□ -0.06
LDHA-223ENST00000545215 CSRNP3Q8WYN3 585 aa14.64□□□□□ -0.07
LDHA-223ENST00000545215 KIF21AQ7Z4S6 1674 aa14.58□□□□□ -0.07
LDHA-223ENST00000545215 DCAF1Q9Y4B6 1507 aa14.57□□□□□ -0.08
LDHA-223ENST00000545215 LAMC3Q9Y6N6 1575 aa14.55□□□□□ -0.08
LDHA-223ENST00000545215 PDS5BQ9NTI5 1447 aa14.54□□□□□ -0.08
LDHA-223ENST00000545215 NPM3O75607 178 aaKnown RBP14.5□□□□□ -0.09
LDHA-223ENST00000545215 WDR62O43379 1518 aa14.47□□□□□ -0.09
LDHA-223ENST00000545215 MRC2Q9UBG0 1479 aa14.46□□□□□ -0.09
LDHA-223ENST00000545215 ATAD2BQ9ULI0 1458 aa14.46□□□□□ -0.09
LDHA-223ENST00000545215 HMGXB3Q12766 1538 aa14.44□□□□□ -0.1
LDHA-223ENST00000545215 ARAP1Q96P48 1450 aa14.43□□□□□ -0.1
LDHA-223ENST00000545215 ZCCHC6Q5VYS8 1495 aaKnown RBP14.37□□□□□ -0.11
LDHA-223ENST00000545215 CNKSR2Q8WXI2 1034 aa14.32□□□□□ -0.12
LDHA-223ENST00000545215 SCAF1Q9H7N4 1312 aaKnown RBP14.25□□□□□ -0.13
LDHA-223ENST00000545215 KDM4FA0A1W2PPD8 638 aa14.23□□□□□ -0.13
LDHA-223ENST00000545215 SOCS7O14512 581 aa14.23□□□□□ -0.13
LDHA-223ENST00000545215 FBXO41Q8TF61 875 aa14.23□□□□□ -0.13
LDHA-223ENST00000545215 LMTK3Q96Q04 1460 aa14.22□□□□□ -0.13
LDHA-223ENST00000545215 BAZ1BQ9UIG0 1483 aaKnown RBP14.22□□□□□ -0.13
LDHA-223ENST00000545215 CADPSQ9ULU8 1353 aa14.21□□□□□ -0.14
LDHA-223ENST00000545215 RSF1Q96T23 1441 aaPredicted RBP14.19□□□□□ -0.14
LDHA-223ENST00000545215 ZBTB22O15209 634 aa14.17□□□□□ -0.14
LDHA-223ENST00000545215 MSH5O43196 834 aa14.13□□□□□ -0.15
LDHA-223ENST00000545215 CEP164Q9UPV0 1460 aa14.12□□□□□ -0.15
LDHA-223ENST00000545215 ERCC6L2Q5T890 1561 aa14.09□□□□□ -0.15
LDHA-223ENST00000545215 ILDR2Q71H61 639 aa14.08□□□□□ -0.16
LDHA-223ENST00000545215 SMARCA4P51532 1647 aa14.07□□□□□ -0.16
LDHA-223ENST00000545215 ZNF608Q9ULD9 1512 aaPredicted RBP14.02□□□□□ -0.16
LDHA-223ENST00000545215 FANCD2Q9BXW9 1451 aa14.01□□□□□ -0.17
LDHA-223ENST00000545215 PEG3Q9GZU2 1588 aa13.98□□□□□ -0.17
LDHA-223ENST00000545215 URB2Q14146 1524 aaKnown RBP13.98□□□□□ -0.17
LDHA-223ENST00000545215 MAPK8IP2Q13387 824 aaPredicted RBP13.97□□□□□ -0.17
LDHA-223ENST00000545215 CHD1O14646 1710 aa13.97□□□□□ -0.17
LDHA-223ENST00000545215 POTEDQ86YR6 584 aa13.96□□□□□ -0.17
LDHA-223ENST00000545215 HECW2Q9P2P5 1572 aa13.95□□□□□ -0.18
LDHA-223ENST00000545215 IFT140Q96RY7 1462 aa13.92□□□□□ -0.18
LDHA-223ENST00000545215 FBLN2P98095 1184 aa13.9□□□□□ -0.18
LDHA-223ENST00000545215 FOXD4L1Q9NU39 408 aa13.9□□□□□ -0.18
LDHA-223ENST00000545215 RNF216Q9NWF9 866 aaPredicted RBP13.88□□□□□ -0.19
LDHA-223ENST00000545215 DISP3Q9P2K9 1392 aa13.86□□□□□ -0.19
LDHA-223ENST00000545215 CLASP1Q7Z460 1538 aa13.83□□□□□ -0.2
LDHA-223ENST00000545215 EIF4G3O43432 1585 aaKnown RBP13.83□□□□□ -0.2
LDHA-223ENST00000545215 SYNJ2O15056 1496 aa13.82□□□□□ -0.2
LDHA-223ENST00000545215 KIF13AQ9H1H9 1805 aa13.8□□□□□ -0.2
LDHA-223ENST00000545215 GAPVD1Q14C86 1478 aa13.8□□□□□ -0.2
LDHA-223ENST00000545215 CFTRP13569 1480 aa13.76□□□□□ -0.21
LDHA-223ENST00000545215 AQRO60306 1485 aaKnown RBP eCLIP13.75□□□□□ -0.211e-8■■■■□ 22.9
LDHA-223ENST00000545215 ADGRL1O94910 1474 aa13.72□□□□□ -0.21
LDHA-223ENST00000545215 KDM6BO15054 1643 aa13.68□□□□□ -0.22
LDHA-223ENST00000545215 SYNJ1O43426 1573 aa13.67□□□□□ -0.22
LDHA-223ENST00000545215 MROH2BQ7Z745 1585 aa13.66□□□□□ -0.22
LDHA-223ENST00000545215 HOXD11P31277 338 aaPredicted RBP13.65□□□□□ -0.22
LDHA-223ENST00000545215 FAM69CQ0P6D2 419 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms