RNA–Protein interactions for RNA: ENST00000543046.1

MDM2-229, Transcript of MDM2 proto-oncogene, humanhuman

TSL 3

Gene MDM2, Length 432 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDM2-229ENST00000543046 AEBP2Q6ZN18 517 aaPredicted RBP21.81■■□□□ 1.08
MDM2-229ENST00000543046 CHIC1Q5VXU3 224 aa21.32■■□□□ 1
MDM2-229ENST00000543046 PHF23Q9BUL5 403 aaPredicted RBP18.75■□□□□ 0.59
MDM2-229ENST00000543046 SENP3Q9H4L4 574 aaPredicted RBP18.5■□□□□ 0.55
MDM2-229ENST00000543046 PLPPR3Q6T4P5 718 aa17.32■□□□□ 0.36
MDM2-229ENST00000543046 FOXD1Q16676 465 aa17.16■□□□□ 0.34
MDM2-229ENST00000543046 PPP6R1Q9UPN7 881 aa16.54■□□□□ 0.24
MDM2-229ENST00000543046 ADRA2BP18089 450 aa16.53■□□□□ 0.24
MDM2-229ENST00000543046 PIAS4Q8N2W9 510 aaPredicted RBP16.2■□□□□ 0.18
MDM2-229ENST00000543046 MSH5O43196 834 aa15.82■□□□□ 0.12
MDM2-229ENST00000543046 PPP4R3CPQ6ZMV5 832 aa15.27■□□□□ 0.04
MDM2-229ENST00000543046 SCAF1Q9H7N4 1312 aaKnown RBP15.12■□□□□ 0.01
MDM2-229ENST00000543046 MAPK8IP2Q13387 824 aaPredicted RBP14.99□□□□□ -0.01
MDM2-229ENST00000543046 KCNA4P22459 653 aa14.95□□□□□ -0.02
MDM2-229ENST00000543046 NCBP3Q53F19 620 aaKnown RBP14.88□□□□□ -0.03
MDM2-229ENST00000543046 CNKSR2Q8WXI2 1034 aa14.84□□□□□ -0.03
MDM2-229ENST00000543046 DMRT2Q9Y5R5 561 aa14.77□□□□□ -0.05
MDM2-229ENST00000543046 NPM3O75607 178 aaKnown RBP14.66□□□□□ -0.06
MDM2-229ENST00000543046 RNF216Q9NWF9 866 aaPredicted RBP14.54□□□□□ -0.08
MDM2-229ENST00000543046 HOXD11P31277 338 aaPredicted RBP14.47□□□□□ -0.09
MDM2-229ENST00000543046 POTEDQ86YR6 584 aa14.36□□□□□ -0.11
MDM2-229ENST00000543046 SLC4A1APQ9BWU0 796 aaKnown RBP14.24□□□□□ -0.13
MDM2-229ENST00000543046 DNAJC5BQ9UF47 199 aa14.22□□□□□ -0.13
MDM2-229ENST00000543046 DCAF8L1A6NGE4 600 aa14.14□□□□□ -0.15
MDM2-229ENST00000543046 EHMT2Q96KQ7 1210 aa13.87□□□□□ -0.19
MDM2-229ENST00000543046 SLC4A2P04920 1241 aa13.83□□□□□ -0.2
MDM2-229ENST00000543046 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.79□□□□□ -0.29e-10■■□□□ 12
MDM2-229ENST00000543046 ZBTB22O15209 634 aa13.75□□□□□ -0.21
MDM2-229ENST00000543046 FOXD4L1Q9NU39 408 aa13.75□□□□□ -0.21
MDM2-229ENST00000543046 CSRNP3Q8WYN3 585 aa13.69□□□□□ -0.22
MDM2-229ENST00000543046 U3KPZ7 1027 aaPredicted RBP13.57□□□□□ -0.24
MDM2-229ENST00000543046 RNF39Q9H2S5 420 aa13.56□□□□□ -0.24
MDM2-229ENST00000543046 MYCNP04198 464 aaPredicted RBP13.55□□□□□ -0.24
MDM2-229ENST00000543046 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.41□□□□□ -0.26
MDM2-229ENST00000543046 HNRNPUL2Q1KMD3 747 aaKnown RBP13.41□□□□□ -0.26
MDM2-229ENST00000543046 C1QBPQ07021 282 aaKnown RBP13.39□□□□□ -0.27
MDM2-229ENST00000543046 SAMD1Q6SPF0 538 aaPredicted RBP13.36□□□□□ -0.27
MDM2-229ENST00000543046 APLP2Q06481 763 aa13.27□□□□□ -0.29
MDM2-229ENST00000543046 ATXN8OSP0DMR3 200 aa13.26□□□□□ -0.29
MDM2-229ENST00000543046 SPINK5Q9NQ38 1064 aaPredicted RBP13.2□□□□□ -0.3
MDM2-229ENST00000543046 CACNB1Q02641 598 aaPredicted RBP13.19□□□□□ -0.3
MDM2-229ENST00000543046 ATF5Q9Y2D1 282 aaPredicted RBP13.19□□□□□ -0.3
MDM2-229ENST00000543046 CAPN15O75808 1086 aa13.14□□□□□ -0.31
MDM2-229ENST00000543046 TRHP20396 242 aaPredicted RBP13.09□□□□□ -0.31
MDM2-229ENST00000543046 ZNF219Q9P2Y4 722 aaPredicted RBP13.09□□□□□ -0.31
MDM2-229ENST00000543046 DSG3P32926 999 aa12.92□□□□□ -0.34
MDM2-229ENST00000543046 ABCB7O75027 752 aa12.9□□□□□ -0.34
MDM2-229ENST00000543046 POLA2Q14181 598 aa12.87□□□□□ -0.35
MDM2-229ENST00000543046 ZBTB12Q9Y330 459 aaPredicted RBP12.66□□□□□ -0.38
MDM2-229ENST00000543046 FBLN2P98095 1184 aa12.63□□□□□ -0.39
MDM2-229ENST00000543046 MKRN4PQ13434 485 aaPredicted RBP12.61□□□□□ -0.39
MDM2-229ENST00000543046 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
MDM2-229ENST00000543046 FKBP8Q14318 412 aa12.38□□□□□ -0.43
MDM2-229ENST00000543046 SPDYE4A6NLX3 237 aa12.34□□□□□ -0.43
MDM2-229ENST00000543046 SPDYE2BA6NHP3 402 aa12.32□□□□□ -0.44
MDM2-229ENST00000543046 SPDYE6P0CI01 402 aa12.32□□□□□ -0.44
MDM2-229ENST00000543046 SPDYE2Q495Y8 402 aa12.32□□□□□ -0.44
MDM2-229ENST00000543046 RBM42Q9BTD8 480 aaKnown RBP12.3□□□□□ -0.44
MDM2-229ENST00000543046 ZNF692Q9BU19 519 aaPredicted RBP12.28□□□□□ -0.44
MDM2-229ENST00000543046 SSUH2Q9Y2M2 353 aa12.23□□□□□ -0.45
MDM2-229ENST00000543046 AKT1S1Q96B36 256 aa12.16□□□□□ -0.46
MDM2-229ENST00000543046 PABPN1Q86U42 306 aaKnown RBP eCLIP12.13□□□□□ -0.47
MDM2-229ENST00000543046 PROM2Q8N271 834 aa12.13□□□□□ -0.47
MDM2-229ENST00000543046 REM2Q8IYK8 340 aaPredicted RBP12.04□□□□□ -0.48
MDM2-229ENST00000543046 SPDYE1Q8NFV5 336 aaPredicted RBP11.96□□□□□ -0.49
MDM2-229ENST00000543046 FBXO3Q9UK99 471 aa11.93□□□□□ -0.5
MDM2-229ENST00000543046 STAG3Q9UJ98 1225 aa11.92□□□□□ -0.5
MDM2-229ENST00000543046 PITPNM1O00562 1244 aa11.91□□□□□ -0.5
MDM2-229ENST00000543046 CLEC11AQ9Y240 323 aa11.91□□□□□ -0.5
MDM2-229ENST00000543046 PRR29P0C7W0 189 aa11.8□□□□□ -0.52
MDM2-229ENST00000543046 CHRDL2Q6WN34 429 aa11.78□□□□□ -0.52
MDM2-229ENST00000543046 VASPP50552 380 aaPredicted RBP11.77□□□□□ -0.53
MDM2-229ENST00000543046 MIER1Q8N108 512 aa11.7□□□□□ -0.54
MDM2-229ENST00000543046 PLCD3Q8N3E9 789 aa11.69□□□□□ -0.54
MDM2-229ENST00000543046 FXR2P51116 673 aaKnown RBP eCLIP11.67□□□□□ -0.54
MDM2-229ENST00000543046 CREBZFQ9NS37 354 aa11.66□□□□□ -0.54
MDM2-229ENST00000543046 PLEKHG5O94827 1062 aa11.64□□□□□ -0.55
MDM2-229ENST00000543046 PIP4P2Q8N4L2 257 aa11.64□□□□□ -0.55
MDM2-229ENST00000543046 CHADLQ6NUI6 762 aa11.62□□□□□ -0.55
MDM2-229ENST00000543046 PRKAR2AP13861 404 aaKnown RBP11.61□□□□□ -0.55
MDM2-229ENST00000543046 IFNLR1Q8IU57 520 aaPredicted RBP11.61□□□□□ -0.55
MDM2-229ENST00000543046 KLHL34Q8N239 644 aa11.56□□□□□ -0.56
MDM2-229ENST00000543046 ZBTB47Q9UFB7 747 aaPredicted RBP11.55□□□□□ -0.56
MDM2-229ENST00000543046 MNX1P50219 401 aaPredicted RBP11.54□□□□□ -0.56
MDM2-229ENST00000543046 FARP1Q9Y4F1 1045 aaPredicted RBP11.5□□□□□ -0.57
MDM2-229ENST00000543046 NPM1P06748 294 aaKnown RBP eCLIP11.46□□□□□ -0.57
MDM2-229ENST00000543046 SPOCK2Q92563 424 aa11.46□□□□□ -0.57
MDM2-229ENST00000543046 NUBP1P53384 320 aa11.4□□□□□ -0.58
MDM2-229ENST00000543046 POTEHQ6S545 545 aa11.39□□□□□ -0.59
MDM2-229ENST00000543046 RASEFQ8IZ41 740 aa11.35□□□□□ -0.59
MDM2-229ENST00000543046 AMER1Q5JTC6 1135 aaPredicted RBP11.32□□□□□ -0.6
MDM2-229ENST00000543046 FAM212AQ96EL1 285 aa11.31□□□□□ -0.6
MDM2-229ENST00000543046 DCAF8Q5TAQ9 597 aa11.29□□□□□ -0.6
MDM2-229ENST00000543046 TSPYL2Q9H2G4 693 aaPredicted RBP11.29□□□□□ -0.6
MDM2-229ENST00000543046 RTN4Q9NQC3 1192 aaKnown RBP11.29□□□□□ -0.6
MDM2-229ENST00000543046 CIZ1Q9ULV3 898 aaPredicted RBP11.29□□□□□ -0.6
MDM2-229ENST00000543046 CD44P16070 742 aaKnown RBP11.28□□□□□ -0.6
MDM2-229ENST00000543046 GSE1Q14687 1217 aa11.28□□□□□ -0.6
MDM2-229ENST00000543046 C19orf67A6NJJ6 358 aa11.27□□□□□ -0.61
MDM2-229ENST00000543046 HAX1O00165 279 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms