Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX2P35548 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX2P35548 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX2P35548 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC20.2■□□□□ 0.82
MSX2P35548 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
MSX2P35548 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX2P35548 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX2P35548 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX2P35548 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MSX2P35548 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.2■□□□□ 0.82
MSX2P35548 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.19■□□□□ 0.82
MSX2P35548 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 OR7E47P-201ENST00000546390 1422 ntBASIC20.19■□□□□ 0.82
MSX2P35548 AC073314.1-201ENST00000568729 2216 ntBASIC20.19■□□□□ 0.82
MSX2P35548 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.19■□□□□ 0.82
MSX2P35548 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
MSX2P35548 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.19■□□□□ 0.82
MSX2P35548 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.19■□□□□ 0.82
MSX2P35548 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
MSX2P35548 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.18■□□□□ 0.82
MSX2P35548 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.18■□□□□ 0.82
MSX2P35548 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 AL499627.2-201ENST00000606283 725 ntBASIC20.18■□□□□ 0.82
MSX2P35548 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
MSX2P35548 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 AC021242.3-201ENST00000607598 1377 ntBASIC20.18■□□□□ 0.82
MSX2P35548 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MSX2P35548 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.18■□□□□ 0.82
MSX2P35548 OXCT2P1-201ENST00000447263 1535 ntBASIC20.17■□□□□ 0.82
MSX2P35548 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.17■□□□□ 0.82
MSX2P35548 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.17■□□□□ 0.82
MSX2P35548 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.17■□□□□ 0.82
MSX2P35548 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC20.17■□□□□ 0.82
MSX2P35548 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 AL031602.1-201ENST00000633169 911 ntBASIC20.17■□□□□ 0.82
MSX2P35548 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC20.17■□□□□ 0.82
MSX2P35548 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.17■□□□□ 0.82
MSX2P35548 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MSX2P35548 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
MSX2P35548 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
MSX2P35548 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.17■□□□□ 0.82
MSX2P35548 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.17■□□□□ 0.82
MSX2P35548 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.16■□□□□ 0.82
MSX2P35548 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC20.16■□□□□ 0.82
MSX2P35548 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC20.16■□□□□ 0.82
MSX2P35548 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.16■□□□□ 0.82
MSX2P35548 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.16■□□□□ 0.82
MSX2P35548 ME2-218ENST00000640965 2476 ntTSL 5 BASIC20.16■□□□□ 0.82
MSX2P35548 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
MSX2P35548 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
MSX2P35548 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
MSX2P35548 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
MSX2P35548 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 YBX1P4-201ENST00000392794 808 ntBASIC20.15■□□□□ 0.82
MSX2P35548 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
MSX2P35548 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
MSX2P35548 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.15■□□□□ 0.82
MSX2P35548 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.15■□□□□ 0.82
MSX2P35548 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.15■□□□□ 0.82
MSX2P35548 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
MSX2P35548 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms