Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 PRRC2C-208ENST00000476522 1931 ntTSL 512.57□□□□□ -0.43e-7■■■□□ 18.8
SF3B1O75533 PRRC2C-206ENST00000467601 717 ntTSL 210.11□□□□□ -0.793e-7■■■□□ 18.8
SF3B1O75533 PRRC2C-203ENST00000392078 1919 ntTSL 1 (best) BASIC9.83□□□□□ -0.843e-7■■■□□ 18.8
SF3B1O75533 RABGGTB-209ENST00000473406 721 ntTSL 55.48□□□□□ -1.532e-6■■■□□ 18.8
SF3B1O75533 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.048e-7■■■□□ 18.7
SF3B1O75533 NRDC-202ENST00000354831 3895 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.238e-7■■■□□ 18.7
SF3B1O75533 NRDC-214ENST00000544028 3819 ntTSL 5 BASIC13.48□□□□□ -0.258e-7■■■□□ 18.7
SF3B1O75533 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.428e-7■■■□□ 18.7
SF3B1O75533 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC30.51■■■□□ 2.481e-7■■■□□ 18.7
SF3B1O75533 PBX2-202ENST00000478678 1320 ntTSL 1 (best)24.38■■□□□ 1.494e-12■■■□□ 18.7
SF3B1O75533 KANSL1-214ENST00000576739 592 ntTSL 223.79■■□□□ 1.41e-6■■■□□ 18.7
SF3B1O75533 DNMT1-227ENST00000592342 636 ntTSL 322.48■■□□□ 1.191e-6■■■□□ 18.7
SF3B1O75533 DNMT1-216ENST00000588952 841 ntTSL 521.49■■□□□ 1.031e-6■■■□□ 18.7
SF3B1O75533 PTBP1-218ENST00000592804 742 ntTSL 221.17■□□□□ 0.984e-12■■■□□ 18.7
SF3B1O75533 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.4■□□□□ 0.71e-7■■■□□ 18.7
SF3B1O75533 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.551e-6■■■□□ 18.7
SF3B1O75533 MAZ-209ENST00000565777 1313 ntTSL 217.97■□□□□ 0.471e-7■■■□□ 18.7
SF3B1O75533 RPS5-207ENST00000599232 1747 nt17.92■□□□□ 0.461e-6■■■□□ 18.7
SF3B1O75533 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.451e-6■■■□□ 18.7
SF3B1O75533 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.454e-12■■■□□ 18.7
SF3B1O75533 MATR3-213ENST00000508689 561 ntTSL 417.79■□□□□ 0.441e-6■■■□□ 18.7
SF3B1O75533 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.341e-6■■■□□ 18.7
SF3B1O75533 RPS5-203ENST00000596314 718 ntTSL 516.62■□□□□ 0.251e-6■■■□□ 18.7
SF3B1O75533 KANSL3-219ENST00000488907 763 ntTSL 316.21■□□□□ 0.191e-6■■■□□ 18.7
SF3B1O75533 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.161e-6■■■□□ 18.7
SF3B1O75533 DBN1-204ENST00000467054 793 ntTSL 214.99□□□□□ -0.011e-6■■■□□ 18.7
SF3B1O75533 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.021e-6■■■□□ 18.7
SF3B1O75533 RPS5-204ENST00000598098 536 ntTSL 2 BASIC14.69□□□□□ -0.061e-6■■■□□ 18.7
SF3B1O75533 DNMT1-214ENST00000588118 973 ntTSL 514.44□□□□□ -0.11e-6■■■□□ 18.7
SF3B1O75533 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.111e-6■■■□□ 18.7
SF3B1O75533 KANSL1-221ENST00000638902 1971 ntTSL 214.03□□□□□ -0.161e-6■■■□□ 18.7
SF3B1O75533 RPS5-205ENST00000598495 800 ntTSL 3 BASIC14.01□□□□□ -0.171e-6■■■□□ 18.7
SF3B1O75533 KANSL3-205ENST00000425656 1526 ntTSL 513.48□□□□□ -0.251e-6■■■□□ 18.7
SF3B1O75533 ADD1-221ENST00000536078 423 ntTSL 212.65□□□□□ -0.381e-6■■■□□ 18.7
SF3B1O75533 KCTD3-202ENST00000448333 751 ntTSL 210.58□□□□□ -0.721e-6■■■□□ 18.7
SF3B1O75533 FAM122C-210ENST00000495147 2063 ntTSL 1 (best)9.48□□□□□ -0.891e-6■■■□□ 18.7
SF3B1O75533 FAM122C-207ENST00000475361 2483 ntTSL 28.97□□□□□ -0.971e-6■■■□□ 18.7
SF3B1O75533 FAM122C-211ENST00000623326 2064 ntAPPRIS ALT2 TSL 1 (best) BASIC8.67□□□□□ -1.021e-6■■■□□ 18.7
SF3B1O75533 SEL1L3-201ENST00000264868 4369 ntTSL 1 (best) BASIC8.36□□□□□ -1.071e-6■■■□□ 18.7
SF3B1O75533 CKAP2L-202ENST00000435431 2455 ntTSL 28.28□□□□□ -1.081e-6■■■□□ 18.7
SF3B1O75533 CKAP2L-201ENST00000302450 4533 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.111e-6■■■□□ 18.7
SF3B1O75533 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.72□□□□□ -1.331e-6■■■□□ 18.7
SF3B1O75533 DNMT1-210ENST00000586800 583 ntTSL 36.07□□□□□ -1.441e-6■■■□□ 18.7
SF3B1O75533 DNMT1-206ENST00000586086 489 ntTSL 35.98□□□□□ -1.451e-6■■■□□ 18.7
SF3B1O75533 ADAM10-210ENST00000482945 2333 ntTSL 25.89□□□□□ -1.471e-6■■■□□ 18.7
SF3B1O75533 DNMT1-226ENST00000592054 591 ntTSL 43.64□□□□□ -1.831e-6■■■□□ 18.7
SF3B1O75533 KDM3A-213ENST00000488971 975 ntTSL 33.44□□□□□ -1.863e-6■■■□□ 18.6
SF3B1O75533 SRSF5-216ENST00000556647 644 ntTSL 210.81□□□□□ -0.681e-7■■■□□ 18.6
SF3B1O75533 SRSF5-213ENST00000556330 546 ntTSL 210.07□□□□□ -0.81e-7■■■□□ 18.6
SF3B1O75533 UBA2-210ENST00000607361 754 ntTSL 228.18■■■□□ 2.18e-7■■■□□ 18.6
SF3B1O75533 NAP1L1-222ENST00000551992 1074 ntTSL 526.43■■□□□ 1.828e-7■■■□□ 18.6
SF3B1O75533 UBA2-203ENST00000586313 1458 ntTSL 223.9■■□□□ 1.428e-7■■■□□ 18.6
SF3B1O75533 AFF1-206ENST00000507468 1486 ntTSL 1 (best)22.54■■□□□ 1.28e-7■■■□□ 18.6
SF3B1O75533 UBE2E1-208ENST00000481622 432 ntTSL 520.76■□□□□ 0.918e-7■■■□□ 18.6
SF3B1O75533 AFF1-208ENST00000511722 638 ntTSL 419.8■□□□□ 0.768e-7■■■□□ 18.6
SF3B1O75533 AFF1-204ENST00000503477 1478 ntTSL 217.81■□□□□ 0.448e-7■■■□□ 18.6
SF3B1O75533 UBE2E1-209ENST00000484048 786 ntTSL 317.18■□□□□ 0.348e-7■■■□□ 18.6
SF3B1O75533 AFF1-205ENST00000504956 1668 ntTSL 217.07■□□□□ 0.328e-7■■■□□ 18.6
SF3B1O75533 UBA2-205ENST00000590048 847 ntTSL 316.27■□□□□ 0.28e-7■■■□□ 18.6
SF3B1O75533 EMD-209ENST00000494443 765 ntTSL 215.22■□□□□ 0.038e-7■■■□□ 18.6
SF3B1O75533 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.118e-7■■■□□ 18.6
SF3B1O75533 SON-215ENST00000475072 658 ntTSL 211.57□□□□□ -0.568e-7■■■□□ 18.6
SF3B1O75533 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.8□□□□□ -1.168e-7■■■□□ 18.6
SF3B1O75533 CTTN-207ENST00000483662 736 ntTSL 27.41□□□□□ -1.228e-7■■■□□ 18.6
SF3B1O75533 SLC25A36-207ENST00000502866 598 ntTSL 46.79□□□□□ -1.328e-7■■■□□ 18.6
SF3B1O75533 AC245060.4-201ENST00000413293 1121 ntBASIC6.45□□□□□ -1.388e-7■■■□□ 18.6
SF3B1O75533 UBA2-207ENST00000592672 353 ntTSL 32.32□□□□□ -2.048e-7■■■□□ 18.6
SF3B1O75533 SON-220ENST00000492229 306 ntTSL 52.01□□□□□ -2.098e-7■■■□□ 18.6
SF3B1O75533 AFF1-207ENST00000511442 463 ntTSL 31.53□□□□□ -2.168e-7■■■□□ 18.6
SF3B1O75533 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC19.82■□□□□ 0.768e-6■■■□□ 18.5
SF3B1O75533 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.68e-6■■■□□ 18.5
SF3B1O75533 TBPL1-204ENST00000416965 991 ntTSL 316.11■□□□□ 0.178e-6■■■□□ 18.5
SF3B1O75533 TBPL1-201ENST00000237264 4228 ntAPPRIS P1 TSL 1 (best) BASIC9.87□□□□□ -0.838e-6■■■□□ 18.5
SF3B1O75533 CALR-205ENST00000587486 957 ntTSL 218.27■□□□□ 0.521e-7■■■□□ 18.5
SF3B1O75533 CALR-207ENST00000590325 781 ntTSL 215.51■□□□□ 0.071e-7■■■□□ 18.5
SF3B1O75533 CHTF18-217ENST00000567620 701 ntTSL 516.36■□□□□ 0.213e-8■■■□□ 18.5
SF3B1O75533 NASP-205ENST00000437901 874 ntTSL 512.73□□□□□ -0.373e-8■■■□□ 18.5
SF3B1O75533 NASP-211ENST00000525515 565 ntTSL 512.73□□□□□ -0.373e-8■■■□□ 18.5
SF3B1O75533 NASP-212ENST00000527359 743 ntTSL 312.64□□□□□ -0.393e-8■■■□□ 18.5
SF3B1O75533 NASP-204ENST00000437362 999 ntTSL 212.63□□□□□ -0.393e-8■■■□□ 18.5
SF3B1O75533 NASP-202ENST00000351223 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC10.95□□□□□ -0.663e-8■■■□□ 18.5
SF3B1O75533 NASP-206ENST00000453748 2080 ntTSL 210.39□□□□□ -0.753e-8■■■□□ 18.5
SF3B1O75533 NASP-216ENST00000528238 894 ntAPPRIS ALT2 TSL 510.08□□□□□ -0.83e-8■■■□□ 18.5
SF3B1O75533 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC8.72□□□□□ -1.013e-8■■■□□ 18.5
SF3B1O75533 NASP-201ENST00000350030 3207 ntAPPRIS P4 TSL 1 (best) BASIC8.63□□□□□ -1.033e-8■■■□□ 18.5
SF3B1O75533 NASP-203ENST00000372052 1458 ntAPPRIS ALT2 TSL 5 BASIC8.1□□□□□ -1.113e-8■■■□□ 18.5
SF3B1O75533 NASP-218ENST00000530073 2740 ntTSL 28.09□□□□□ -1.113e-8■■■□□ 18.5
SF3B1O75533 NASP-210ENST00000481782 3659 ntTSL 27.66□□□□□ -1.183e-8■■■□□ 18.5
SF3B1O75533 HNRNPA3-202ENST00000411529 5688 ntAPPRIS ALT2 TSL 2 BASIC10.21□□□□□ -0.785e-7■■■□□ 18.5
SF3B1O75533 RABGGTB-205ENST00000462042 569 ntTSL 34.46□□□□□ -1.72e-8■■■□□ 18.5
SF3B1O75533 XIST-202ENST00000417942 724 ntTSL 36.08□□□□□ -1.442e-7■■■□□ 18.4
SF3B1O75533 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.84□□□□□ -1.472e-7■■■□□ 18.4
SF3B1O75533 XIST-203ENST00000421322 446 ntTSL 21.49□□□□□ -2.172e-7■■■□□ 18.4
SF3B1O75533 HNRNPR-207ENST00000470941 560 ntTSL 47.37□□□□□ -1.233e-6■■■□□ 18.4
SF3B1O75533 HNRNPR-205ENST00000463552 837 ntTSL 47.13□□□□□ -1.273e-6■■■□□ 18.4
SF3B1O75533 HNRNPR-208ENST00000476451 814 ntTSL 46.66□□□□□ -1.343e-6■■■□□ 18.4
SF3B1O75533 SSBP1-203ENST00000463093 600 ntTSL 514.75□□□□□ -0.051e-9■■■□□ 18.4
SF3B1O75533 SSBP1-202ENST00000461433 1694 ntTSL 1 (best)12.14□□□□□ -0.471e-9■■■□□ 18.4
SF3B1O75533 SSBP1-209ENST00000473783 470 ntTSL 511.8□□□□□ -0.521e-9■■■□□ 18.4
SF3B1O75533 SSBP1-213ENST00000496622 2620 ntTSL 1 (best)6.2□□□□□ -1.421e-9■■■□□ 18.4
Retrieved 100 of 46,956 protein–RNA pairs in 3807.4 ms