Protein–RNA interactions for Protein: Q9XRX5

HHLA3, HERV-H LTR-associating protein 3, humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HHLA3Q9XRX5 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 AC080038.3-201ENST00000623346 1952 ntBASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
HHLA3Q9XRX5 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 SRD5A1P1-201ENST00000442297 786 ntBASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 AC009086.3-201ENST00000623486 1008 ntBASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 FAM99A-202ENST00000538190 1989 ntBASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HHLA3Q9XRX5 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 GATM-206ENST00000558336 1522 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HHLA3Q9XRX5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 AC092171.4-201ENST00000609130 632 ntBASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
HHLA3Q9XRX5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 AC131212.1-201ENST00000613771 668 ntBASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
HHLA3Q9XRX5 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms