RNA–Protein interactions for RNA: ENST00000299238.6

HPS6-201, Transcript of HPS6, biogenesis of lysosomal organelles complex 2 subunit 3, humanhuman

APPRIS P1 BASIC

Gene HPS6, Length 2,649 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS6-201ENST00000299238 NISCHQ9Y2I1 1504 aa42.43■■■■■ 4.38
HPS6-201ENST00000299238 CCDC180Q9P1Z9 1646 aa36.47■■■■□ 3.43
HPS6-201ENST00000299238 ZCCHC6Q5VYS8 1495 aaKnown RBP35.86■■■■□ 3.33
HPS6-201ENST00000299238 SHROOM4Q9ULL8 1493 aa35.6■■■■□ 3.29
HPS6-201ENST00000299238 DCAF1Q9Y4B6 1507 aa34.95■■■■□ 3.19
HPS6-201ENST00000299238 DCAF8L2P0C7V8 631 aa34.93■■■■□ 3.18
HPS6-201ENST00000299238 SUPT5HO00267 1087 aaKnown RBP34.68■■■■□ 3.14
HPS6-201ENST00000299238 MYO15BQ96JP2 1530 aa34.11■■■■□ 3.05
HPS6-201ENST00000299238 SCRIBQ14160 1630 aa33.91■■■■□ 3.02
HPS6-201ENST00000299238 ABCC9O60706 1549 aa33.82■■■■□ 3
HPS6-201ENST00000299238 CHIC1Q5VXU3 224 aa33.73■■■□□ 2.99
HPS6-201ENST00000299238 NACADO15069 1562 aa33.71■■■□□ 2.99
HPS6-201ENST00000299238 HRCP23327 699 aa33.52■■■□□ 2.96
HPS6-201ENST00000299238 RSF1Q96T23 1441 aaPredicted RBP33.35■■■□□ 2.93
HPS6-201ENST00000299238 RB1CC1Q8TDY2 1594 aa33.24■■■□□ 2.91
HPS6-201ENST00000299238 PELP1Q8IZL8 1130 aaKnown RBP33.12■■■□□ 2.89
HPS6-201ENST00000299238 PPARGC1BQ86YN6 1023 aaKnown RBP33.04■■■□□ 2.88
HPS6-201ENST00000299238 CECR2Q9BXF3 1484 aa33.02■■■□□ 2.88
HPS6-201ENST00000299238 MROH2BQ7Z745 1585 aa32.92■■■□□ 2.86
HPS6-201ENST00000299238 UNC13AQ9UPW8 1703 aa32.79■■■□□ 2.84
HPS6-201ENST00000299238 WIZO95785 1651 aa32.75■■■□□ 2.83
HPS6-201ENST00000299238 LOC105371045A0A1W2PR82 267 aa32.73■■■□□ 2.83
HPS6-201ENST00000299238 PCGF6Q9BYE7 350 aa32.68■■■□□ 2.82
HPS6-201ENST00000299238 BAZ1AQ9NRL2 1556 aaPredicted RBP32.67■■■□□ 2.82
HPS6-201ENST00000299238 SMARCA4P51532 1647 aa32.45■■■□□ 2.79
HPS6-201ENST00000299238 TRIM41Q8WV44 630 aa32.41■■■□□ 2.78
HPS6-201ENST00000299238 BICRAQ9NZM4 1560 aa32.32■■■□□ 2.76
HPS6-201ENST00000299238 TOP2AP11388 1531 aaKnown RBP32.31■■■□□ 2.76
HPS6-201ENST00000299238 EIF4G1Q04637 1599 aaKnown RBP32.25■■■□□ 2.75
HPS6-201ENST00000299238 SCAF1Q9H7N4 1312 aaKnown RBP32.22■■■□□ 2.75
HPS6-201ENST00000299238 PABPN1Q86U42 306 aaKnown RBP eCLIP32.13■■■□□ 2.73
HPS6-201ENST00000299238 FAM9AQ8IZU1 332 aaPredicted RBP32.1■■■□□ 2.73
HPS6-201ENST00000299238 SMARCA2P51531 1590 aa32.09■■■□□ 2.73
HPS6-201ENST00000299238 CCDC88BA6NC98 1476 aa32.04■■■□□ 2.72
HPS6-201ENST00000299238 EHMT2Q96KQ7 1210 aa31.96■■■□□ 2.71
HPS6-201ENST00000299238 TRIM26Q12899 539 aaPredicted RBP31.96■■■□□ 2.71
HPS6-201ENST00000299238 MYT1Q01538 1121 aa31.92■■■□□ 2.7
HPS6-201ENST00000299238 PEG3Q9GZU2 1588 aa31.91■■■□□ 2.7
HPS6-201ENST00000299238 ABCC8Q09428 1581 aa31.81■■■□□ 2.68
HPS6-201ENST00000299238 ATAD2BQ9ULI0 1458 aa31.64■■■□□ 2.66
HPS6-201ENST00000299238 BAZ1BQ9UIG0 1483 aaKnown RBP31.54■■■□□ 2.64
HPS6-201ENST00000299238 SOGA1O94964 1423 aa31.37■■■□□ 2.61
HPS6-201ENST00000299238 WRNQ14191 1432 aaPredicted RBP eCLIP31.35■■■□□ 2.61
HPS6-201ENST00000299238 EEA1Q15075 1411 aa31.3■■■□□ 2.6
HPS6-201ENST00000299238 SYNJ1O43426 1573 aa31.27■■■□□ 2.6
HPS6-201ENST00000299238 RUSC2Q8N2Y8 1516 aa31.24■■■□□ 2.59
HPS6-201ENST00000299238 ZEB1P37275 1124 aaPredicted RBP31.21■■■□□ 2.59
HPS6-201ENST00000299238 HMGXB3Q12766 1538 aa31.18■■■□□ 2.58
HPS6-201ENST00000299238 CSRNP3Q8WYN3 585 aa31.13■■■□□ 2.57
HPS6-201ENST00000299238 NCAPD3P42695 1498 aa31.12■■■□□ 2.57
HPS6-201ENST00000299238 ACIN1Q9UKV3 1341 aaKnown RBP31.1■■■□□ 2.57
HPS6-201ENST00000299238 NEUROD1Q13562 356 aa31.09■■■□□ 2.57
HPS6-201ENST00000299238 CEP162Q5TB80 1403 aa31.09■■■□□ 2.57
HPS6-201ENST00000299238 TNIKQ9UKE5 1360 aa31.08■■■□□ 2.57
HPS6-201ENST00000299238 GOLGA3Q08378 1498 aa31.03■■■□□ 2.56
HPS6-201ENST00000299238 TOP2BQ02880 1626 aa30.97■■■□□ 2.55
HPS6-201ENST00000299238 GTF3C3Q9Y5Q9 886 aa30.96■■■□□ 2.55
HPS6-201ENST00000299238 KIF21BO75037 1637 aa30.95■■■□□ 2.54
HPS6-201ENST00000299238 BIVM-ERCC5R4GMW8 1640 aa30.91■■■□□ 2.54
HPS6-201ENST00000299238 TTBK1Q5TCY1 1321 aaPredicted RBP30.91■■■□□ 2.54
HPS6-201ENST00000299238 UBTFP17480 764 aaKnown RBP30.91■■■□□ 2.54
HPS6-201ENST00000299238 CEP164Q9UPV0 1460 aa30.91■■■□□ 2.54
HPS6-201ENST00000299238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.79■■■□□ 2.52
HPS6-201ENST00000299238 CFTRP13569 1480 aa30.75■■■□□ 2.51
HPS6-201ENST00000299238 PRDM2Q13029 1718 aa30.7■■■□□ 2.51
HPS6-201ENST00000299238 CUX1P39880 1505 aa30.7■■■□□ 2.51
HPS6-201ENST00000299238 RAPGEF2Q9Y4G8 1499 aa30.68■■■□□ 2.5
HPS6-201ENST00000299238 CCER1Q8TC90 406 aaPredicted RBP30.64■■■□□ 2.5
HPS6-201ENST00000299238 CLIP1P30622 1438 aa30.6■■■□□ 2.49
HPS6-201ENST00000299238 CC2D2AQ9P2K1 1620 aa30.57■■■□□ 2.48
HPS6-201ENST00000299238 ERICH3Q5RHP9 1530 aa30.52■■■□□ 2.48
HPS6-201ENST00000299238 PRXQ9BXM0 1461 aa30.49■■■□□ 2.47
HPS6-201ENST00000299238 CENPBP07199 599 aaPredicted RBP30.48■■■□□ 2.47
HPS6-201ENST00000299238 VPS8Q8N3P4 1428 aa30.45■■■□□ 2.47
HPS6-201ENST00000299238 CADPSQ9ULU8 1353 aa30.44■■■□□ 2.46
HPS6-201ENST00000299238 KIF27Q86VH2 1401 aa30.43■■■□□ 2.46
HPS6-201ENST00000299238 RANGAP1P46060 587 aaPredicted RBP30.28■■■□□ 2.44
HPS6-201ENST00000299238 DIEXFQ68CQ4 756 aaKnown RBP30.21■■■□□ 2.43
HPS6-201ENST00000299238 CUX2O14529 1486 aa30.2■■■□□ 2.43
HPS6-201ENST00000299238 FGD5Q6ZNL6 1462 aa30.2■■■□□ 2.43
HPS6-201ENST00000299238 ARAP1Q96P48 1450 aa30.2■■■□□ 2.43
HPS6-201ENST00000299238 BCL11AQ9H165 835 aa30.17■■■□□ 2.42
HPS6-201ENST00000299238 FANCD2Q9BXW9 1451 aa30.17■■■□□ 2.42
HPS6-201ENST00000299238 APLP2Q06481 763 aa30.15■■■□□ 2.42
HPS6-201ENST00000299238 HNRNPUL2Q1KMD3 747 aaKnown RBP30.09■■■□□ 2.41
HPS6-201ENST00000299238 IGF1RP08069 1367 aa30.07■■■□□ 2.4
HPS6-201ENST00000299238 DNMBPQ6XZF7 1577 aa30.05■■■□□ 2.4
HPS6-201ENST00000299238 NESP48681 1621 aa30.03■■■□□ 2.4
HPS6-201ENST00000299238 ARHGAP35Q9NRY4 1499 aa30■■■□□ 2.39
HPS6-201ENST00000299238 TOPBP1Q92547 1522 aa29.96■■■□□ 2.39
HPS6-201ENST00000299238 YTHDC1Q96MU7 727 aaKnown RBP29.95■■■□□ 2.39
HPS6-201ENST00000299238 CARMIL1Q5VZK9 1371 aa29.95■■■□□ 2.38
HPS6-201ENST00000299238 LAMC3Q9Y6N6 1575 aa29.93■■■□□ 2.38
HPS6-201ENST00000299238 POLA1P09884 1462 aaPredicted RBP29.91■■■□□ 2.38
HPS6-201ENST00000299238 ABCA10Q8WWZ4 1543 aa29.88■■■□□ 2.37
HPS6-201ENST00000299238 RAD54L2Q9Y4B4 1467 aa29.88■■■□□ 2.37
HPS6-201ENST00000299238 KANK4Q5T7N3 995 aaPredicted RBP29.82■■■□□ 2.36
HPS6-201ENST00000299238 URB2Q14146 1524 aaKnown RBP29.77■■■□□ 2.36
HPS6-201ENST00000299238 WDR97A6NE52 1622 aa29.76■■■□□ 2.35
HPS6-201ENST00000299238 ZNF316A6NFI3 1004 aaPredicted RBP29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms