Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 TAF9-206ENST00000508954 1057 ntTSL 222.09■■□□□ 1.134e-7■□□□□ 10.6
CDC40O60508 TAF9-207ENST00000509462 761 ntAPPRIS ALT2 TSL 221.96■■□□□ 1.114e-7■□□□□ 10.6
CDC40O60508 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.97■□□□□ 0.954e-7■□□□□ 10.6
CDC40O60508 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.724e-7■□□□□ 10.6
CDC40O60508 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.39■□□□□ 0.694e-7■□□□□ 10.6
CDC40O60508 TAF9-203ENST00000503245 966 ntAPPRIS ALT2 TSL 519.33■□□□□ 0.684e-7■□□□□ 10.6
CDC40O60508 TAF9-208ENST00000512152 582 ntAPPRIS ALT2 TSL 219.15■□□□□ 0.664e-7■□□□□ 10.6
CDC40O60508 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.62■□□□□ 0.414e-7■□□□□ 10.6
CDC40O60508 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.44e-7■□□□□ 10.6
CDC40O60508 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.294e-7■□□□□ 10.6
CDC40O60508 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.284e-7■□□□□ 10.6
CDC40O60508 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.114e-7■□□□□ 10.6
CDC40O60508 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.074e-7■□□□□ 10.6
CDC40O60508 ATXN2-218ENST00000549455 568 ntTSL 413.59□□□□□ -0.234e-7■□□□□ 10.6
CDC40O60508 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.234e-7■□□□□ 10.6
CDC40O60508 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.47□□□□□ -0.254e-7■□□□□ 10.6
CDC40O60508 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.43□□□□□ -0.264e-7■□□□□ 10.6
CDC40O60508 ATXN2-204ENST00000392645 2842 ntTSL 213.21□□□□□ -0.294e-7■□□□□ 10.6
CDC40O60508 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.324e-7■□□□□ 10.6
CDC40O60508 MLLT10-207ENST00000430455 184 ntTSL 1 (best)12.93□□□□□ -0.344e-7■□□□□ 10.6
CDC40O60508 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.71□□□□□ -0.374e-7■□□□□ 10.6
CDC40O60508 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.474e-7■□□□□ 10.6
CDC40O60508 NFE2L1-222ENST00000585291 4390 ntTSL 1 (best) BASIC11.91□□□□□ -0.54e-7■□□□□ 10.6
CDC40O60508 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.514e-7■□□□□ 10.6
CDC40O60508 ATXN2-226ENST00000608853 4376 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.544e-7■□□□□ 10.6
CDC40O60508 MLLT10-209ENST00000462999 344 ntTSL 1 (best)11.56□□□□□ -0.564e-7■□□□□ 10.6
CDC40O60508 MLLT10-213ENST00000479634 165 ntTSL 1 (best)11.56□□□□□ -0.564e-7■□□□□ 10.6
CDC40O60508 MLLT10-214ENST00000480415 297 ntTSL 1 (best)11.56□□□□□ -0.564e-7■□□□□ 10.6
CDC40O60508 MLLT10-215ENST00000495130 744 ntTSL 311.47□□□□□ -0.574e-7■□□□□ 10.6
CDC40O60508 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC11.46□□□□□ -0.574e-7■□□□□ 10.6
CDC40O60508 NFE2L1-202ENST00000361665 4729 ntTSL 5 BASIC11.41□□□□□ -0.584e-7■□□□□ 10.6
CDC40O60508 ATXN2-210ENST00000483311 4159 ntTSL 1 (best)10.99□□□□□ -0.654e-7■□□□□ 10.6
CDC40O60508 MLLT10-211ENST00000471315 319 ntTSL 310.6□□□□□ -0.714e-7■□□□□ 10.6
CDC40O60508 NFE2L1-201ENST00000357480 4672 ntTSL 1 (best) BASIC10.51□□□□□ -0.734e-7■□□□□ 10.6
CDC40O60508 FLNB-210ENST00000481470 6497 ntTSL 1 (best)10.32□□□□□ -0.764e-7■□□□□ 10.6
CDC40O60508 NFE2L1-212ENST00000581319 481 ntTSL 38.66□□□□□ -1.024e-7■□□□□ 10.6
CDC40O60508 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.254e-7■□□□□ 10.6
CDC40O60508 UBP1-212ENST00000492136 7394 ntTSL 27□□□□□ -1.294e-7■□□□□ 10.6
CDC40O60508 AK6-204ENST00000512561 587 ntTSL 5 BASIC6.96□□□□□ -1.34e-7■□□□□ 10.6
CDC40O60508 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.344e-7■□□□□ 10.6
CDC40O60508 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.39□□□□□ -1.394e-7■□□□□ 10.6
CDC40O60508 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.44e-7■□□□□ 10.6
CDC40O60508 TAF9-204ENST00000504109 588 ntAPPRIS ALT2 TSL 36.01□□□□□ -1.454e-7■□□□□ 10.6
CDC40O60508 MLLT10-212ENST00000476557 490 ntTSL 1 (best)5.94□□□□□ -1.464e-7■□□□□ 10.6
CDC40O60508 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.514e-7■□□□□ 10.6
CDC40O60508 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.564e-7■□□□□ 10.6
CDC40O60508 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.574e-7■□□□□ 10.6
CDC40O60508 ATXN2-217ENST00000548492 556 ntTSL 45.07□□□□□ -1.64e-7■□□□□ 10.6
CDC40O60508 UBP1-206ENST00000464787 536 ntTSL 34.84□□□□□ -1.634e-7■□□□□ 10.6
CDC40O60508 UBP1-210ENST00000486388 928 ntTSL 34.43□□□□□ -1.74e-7■□□□□ 10.6
CDC40O60508 UBP1-207ENST00000466441 927 ntTSL 1 (best)4.22□□□□□ -1.734e-7■□□□□ 10.6
CDC40O60508 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.47□□□□□ -1.854e-7■□□□□ 10.6
CDC40O60508 SNX5-206ENST00000469704 696 ntTSL 324.55■■□□□ 1.523e-16■□□□□ 10.6
CDC40O60508 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.67■■□□□ 1.223e-16■□□□□ 10.6
CDC40O60508 SLC22A31-203ENST00000563595 780 ntTSL 322.12■■□□□ 1.131e-14■□□□□ 10.6
CDC40O60508 FUS-212ENST00000569760 639 ntTSL 221.7■■□□□ 1.062e-6■□□□□ 10.6
CDC40O60508 SNX5-217ENST00000606557 1087 ntBASIC21.02■□□□□ 0.963e-16■□□□□ 10.6
CDC40O60508 SLC22A31-202ENST00000562916 692 ntTSL 519.93■□□□□ 0.781e-14■□□□□ 10.6
CDC40O60508 FUS-204ENST00000483853 778 ntTSL 219.71■□□□□ 0.752e-6■□□□□ 10.6
CDC40O60508 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.01■□□□□ 0.473e-16■□□□□ 10.6
CDC40O60508 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.09■□□□□ 0.333e-16■□□□□ 10.6
CDC40O60508 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.211e-8■□□□□ 10.6
CDC40O60508 LAMA5-214ENST00000497363 579 ntTSL 315.22■□□□□ 0.031e-8■□□□□ 10.6
CDC40O60508 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.011e-8■□□□□ 10.6
CDC40O60508 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -02e-6■□□□□ 10.6
CDC40O60508 FLNA-213ENST00000466325 828 ntTSL 214.15□□□□□ -0.142e-6■□□□□ 10.6
CDC40O60508 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.79□□□□□ -0.21e-8■□□□□ 10.6
CDC40O60508 FLNA-205ENST00000415241 704 ntTSL 513.78□□□□□ -0.22e-6■□□□□ 10.6
CDC40O60508 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.66□□□□□ -0.222e-6■□□□□ 10.6
CDC40O60508 SF1-211ENST00000448404 2778 ntTSL 1 (best)13.5□□□□□ -0.251e-8■□□□□ 10.6
CDC40O60508 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.49□□□□□ -0.252e-6■□□□□ 10.6
CDC40O60508 UCKL1-207ENST00000632800 1530 ntTSL 513.38□□□□□ -0.274e-10■□□□□ 10.6
CDC40O60508 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.32e-6■□□□□ 10.6
CDC40O60508 OVOL2-204ENST00000486776 550 ntTSL 313.04□□□□□ -0.323e-16■□□□□ 10.6
CDC40O60508 HNRNPH3-206ENST00000478698 1507 ntTSL 213□□□□□ -0.332e-6■□□□□ 10.6
CDC40O60508 HNRNPH3-210ENST00000490442 1521 ntTSL 213□□□□□ -0.332e-6■□□□□ 10.6
CDC40O60508 HNRNPH3-211ENST00000491200 2308 ntTSL 1 (best)12.74□□□□□ -0.372e-6■□□□□ 10.6
CDC40O60508 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.381e-8■□□□□ 10.6
CDC40O60508 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.5□□□□□ -0.411e-8■□□□□ 10.6
CDC40O60508 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.38□□□□□ -0.431e-8■□□□□ 10.6
CDC40O60508 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)12.12□□□□□ -0.472e-6■□□□□ 10.6
CDC40O60508 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC12.02□□□□□ -0.492e-6■□□□□ 10.6
CDC40O60508 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.491e-8■□□□□ 10.6
CDC40O60508 SRC-203ENST00000373567 4321 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.572e-6■□□□□ 10.6
CDC40O60508 SRC-207ENST00000477066 3300 ntTSL 211.08□□□□□ -0.642e-6■□□□□ 10.6
CDC40O60508 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.641e-8■□□□□ 10.6
CDC40O60508 MCM4-202ENST00000517709 842 ntTSL 210.94□□□□□ -0.661e-8■□□□□ 10.6
CDC40O60508 MCM4-208ENST00000519470 498 ntTSL 210.93□□□□□ -0.661e-8■□□□□ 10.6
CDC40O60508 MCM4-205ENST00000518680 862 ntTSL 510.88□□□□□ -0.671e-8■□□□□ 10.6
CDC40O60508 PRRC2A-203ENST00000460302 697 ntTSL 310.77□□□□□ -0.692e-6■□□□□ 10.6
CDC40O60508 SRC-201ENST00000358208 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.72e-6■□□□□ 10.6
CDC40O60508 MCM4-209ENST00000520637 839 ntTSL 210.02□□□□□ -0.811e-8■□□□□ 10.6
CDC40O60508 SF3B3-204ENST00000563739 1105 ntTSL 29.67□□□□□ -0.862e-6■□□□□ 10.6
CDC40O60508 HNRNPH3-205ENST00000469172 3356 ntTSL 29.22□□□□□ -0.932e-6■□□□□ 10.6
CDC40O60508 SF1-219ENST00000496969 455 ntTSL 37.82□□□□□ -1.161e-8■□□□□ 10.6
CDC40O60508 SF1-218ENST00000489544 584 ntTSL 27.55□□□□□ -1.21e-8■□□□□ 10.6
CDC40O60508 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.212e-6■□□□□ 10.6
CDC40O60508 ATXN1-206ENST00000483591 892 ntTSL 1 (best)7.51□□□□□ -1.212e-6■□□□□ 10.6
CDC40O60508 NPM1-207ENST00000521260 510 ntTSL 24.78□□□□□ -1.641e-8■□□□□ 10.6
CDC40O60508 SF1-217ENST00000486960 719 ntTSL 24.76□□□□□ -1.651e-8■□□□□ 10.6
Retrieved 100 of 5,364 protein–RNA pairs in 24.8 ms