Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 TAF9-206ENST00000508954 1057 ntTSL 222.09■■□□□ 1.134e-7■□□□□ 10.6
CDC40O60508 TAF9-207ENST00000509462 761 ntAPPRIS ALT2 TSL 221.96■■□□□ 1.114e-7■□□□□ 10.6
CDC40O60508 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC20.97■□□□□ 0.954e-7■□□□□ 10.6
CDC40O60508 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.724e-7■□□□□ 10.6
CDC40O60508 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC19.39■□□□□ 0.694e-7■□□□□ 10.6
CDC40O60508 TAF9-203ENST00000503245 966 ntAPPRIS ALT2 TSL 519.33■□□□□ 0.684e-7■□□□□ 10.6
CDC40O60508 TAF9-208ENST00000512152 582 ntAPPRIS ALT2 TSL 219.15■□□□□ 0.664e-7■□□□□ 10.6
CDC40O60508 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC17.62■□□□□ 0.414e-7■□□□□ 10.6
CDC40O60508 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.44e-7■□□□□ 10.6
CDC40O60508 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.294e-7■□□□□ 10.6
CDC40O60508 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.284e-7■□□□□ 10.6
CDC40O60508 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.114e-7■□□□□ 10.6
CDC40O60508 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.074e-7■□□□□ 10.6
CDC40O60508 ATXN2-218ENST00000549455 568 ntTSL 413.59□□□□□ -0.234e-7■□□□□ 10.6
CDC40O60508 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.234e-7■□□□□ 10.6
CDC40O60508 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC13.47□□□□□ -0.254e-7■□□□□ 10.6
CDC40O60508 AK6-201ENST00000380818 1183 ntTSL 2 BASIC13.43□□□□□ -0.264e-7■□□□□ 10.6
CDC40O60508 ATXN2-204ENST00000392645 2842 ntTSL 213.21□□□□□ -0.294e-7■□□□□ 10.6
CDC40O60508 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.03□□□□□ -0.324e-7■□□□□ 10.6
CDC40O60508 MLLT10-207ENST00000430455 184 ntTSL 1 (best)12.93□□□□□ -0.344e-7■□□□□ 10.6
CDC40O60508 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC12.71□□□□□ -0.374e-7■□□□□ 10.6
CDC40O60508 NFE2L1-203ENST00000362042 4774 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.474e-7■□□□□ 10.6
CDC40O60508 NFE2L1-222ENST00000585291 4390 ntTSL 1 (best) BASIC11.91□□□□□ -0.54e-7■□□□□ 10.6
CDC40O60508 AK6-202ENST00000380822 1648 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.514e-7■□□□□ 10.6
CDC40O60508 ATXN2-226ENST00000608853 4376 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.544e-7■□□□□ 10.6
CDC40O60508 MLLT10-209ENST00000462999 344 ntTSL 1 (best)11.56□□□□□ -0.564e-7■□□□□ 10.6
CDC40O60508 MLLT10-213ENST00000479634 165 ntTSL 1 (best)11.56□□□□□ -0.564e-7■□□□□ 10.6
CDC40O60508 MLLT10-214ENST00000480415 297 ntTSL 1 (best)11.56□□□□□ -0.564e-7■□□□□ 10.6
CDC40O60508 MLLT10-215ENST00000495130 744 ntTSL 311.47□□□□□ -0.574e-7■□□□□ 10.6
CDC40O60508 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC11.46□□□□□ -0.574e-7■□□□□ 10.6
CDC40O60508 NFE2L1-202ENST00000361665 4729 ntTSL 5 BASIC11.41□□□□□ -0.584e-7■□□□□ 10.6
CDC40O60508 ATXN2-210ENST00000483311 4159 ntTSL 1 (best)10.99□□□□□ -0.654e-7■□□□□ 10.6
CDC40O60508 MLLT10-211ENST00000471315 319 ntTSL 310.6□□□□□ -0.714e-7■□□□□ 10.6
CDC40O60508 NFE2L1-201ENST00000357480 4672 ntTSL 1 (best) BASIC10.51□□□□□ -0.734e-7■□□□□ 10.6
CDC40O60508 FLNB-210ENST00000481470 6497 ntTSL 1 (best)10.32□□□□□ -0.764e-7■□□□□ 10.6
CDC40O60508 NFE2L1-212ENST00000581319 481 ntTSL 38.66□□□□□ -1.024e-7■□□□□ 10.6
CDC40O60508 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.254e-7■□□□□ 10.6
CDC40O60508 UBP1-212ENST00000492136 7394 ntTSL 27□□□□□ -1.294e-7■□□□□ 10.6
CDC40O60508 AK6-204ENST00000512561 587 ntTSL 5 BASIC6.96□□□□□ -1.34e-7■□□□□ 10.6
CDC40O60508 ATXN2-214ENST00000535949 3205 ntAPPRIS ALT2 TSL 1 (best) BASIC6.65□□□□□ -1.344e-7■□□□□ 10.6
CDC40O60508 AK6-203ENST00000502819 743 ntTSL 5 BASIC6.39□□□□□ -1.394e-7■□□□□ 10.6
CDC40O60508 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.3□□□□□ -1.44e-7■□□□□ 10.6
CDC40O60508 TAF9-204ENST00000504109 588 ntAPPRIS ALT2 TSL 36.01□□□□□ -1.454e-7■□□□□ 10.6
CDC40O60508 MLLT10-212ENST00000476557 490 ntTSL 1 (best)5.94□□□□□ -1.464e-7■□□□□ 10.6
CDC40O60508 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.514e-7■□□□□ 10.6
CDC40O60508 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.31□□□□□ -1.564e-7■□□□□ 10.6
CDC40O60508 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.574e-7■□□□□ 10.6
CDC40O60508 ATXN2-217ENST00000548492 556 ntTSL 45.07□□□□□ -1.64e-7■□□□□ 10.6
CDC40O60508 UBP1-206ENST00000464787 536 ntTSL 34.84□□□□□ -1.634e-7■□□□□ 10.6
CDC40O60508 UBP1-210ENST00000486388 928 ntTSL 34.43□□□□□ -1.74e-7■□□□□ 10.6
CDC40O60508 UBP1-207ENST00000466441 927 ntTSL 1 (best)4.22□□□□□ -1.734e-7■□□□□ 10.6
CDC40O60508 AK6-205ENST00000618980 483 ntTSL 2 BASIC3.47□□□□□ -1.854e-7■□□□□ 10.6
CDC40O60508 SNX5-206ENST00000469704 696 ntTSL 324.55■■□□□ 1.523e-16■□□□□ 10.6
CDC40O60508 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC22.67■■□□□ 1.223e-16■□□□□ 10.6
CDC40O60508 SLC22A31-203ENST00000563595 780 ntTSL 322.12■■□□□ 1.131e-14■□□□□ 10.6
CDC40O60508 FUS-212ENST00000569760 639 ntTSL 221.7■■□□□ 1.062e-6■□□□□ 10.6
CDC40O60508 SNX5-217ENST00000606557 1087 ntBASIC21.02■□□□□ 0.963e-16■□□□□ 10.6
CDC40O60508 SLC22A31-202ENST00000562916 692 ntTSL 519.93■□□□□ 0.781e-14■□□□□ 10.6
CDC40O60508 FUS-204ENST00000483853 778 ntTSL 219.71■□□□□ 0.752e-6■□□□□ 10.6
CDC40O60508 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.01■□□□□ 0.473e-16■□□□□ 10.6
CDC40O60508 SNX5-210ENST00000481323 562 ntTSL 3 BASIC17.09■□□□□ 0.333e-16■□□□□ 10.6
CDC40O60508 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.211e-8■□□□□ 10.6
CDC40O60508 LAMA5-214ENST00000497363 579 ntTSL 315.22■□□□□ 0.031e-8■□□□□ 10.6
CDC40O60508 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.011e-8■□□□□ 10.6
CDC40O60508 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -02e-6■□□□□ 10.6
CDC40O60508 FLNA-213ENST00000466325 828 ntTSL 214.15□□□□□ -0.142e-6■□□□□ 10.6
CDC40O60508 SF1-209ENST00000433274 2317 ntTSL 2 BASIC13.79□□□□□ -0.21e-8■□□□□ 10.6
CDC40O60508 FLNA-205ENST00000415241 704 ntTSL 513.78□□□□□ -0.22e-6■□□□□ 10.6
CDC40O60508 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.66□□□□□ -0.222e-6■□□□□ 10.6
CDC40O60508 SF1-211ENST00000448404 2778 ntTSL 1 (best)13.5□□□□□ -0.251e-8■□□□□ 10.6
CDC40O60508 SON-203ENST00000381679 7860 ntTSL 5 BASIC13.49□□□□□ -0.252e-6■□□□□ 10.6
CDC40O60508 UCKL1-207ENST00000632800 1530 ntTSL 513.38□□□□□ -0.274e-10■□□□□ 10.6
CDC40O60508 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC13.17□□□□□ -0.32e-6■□□□□ 10.6
CDC40O60508 OVOL2-204ENST00000486776 550 ntTSL 313.04□□□□□ -0.323e-16■□□□□ 10.6
CDC40O60508 HNRNPH3-206ENST00000478698 1507 ntTSL 213□□□□□ -0.332e-6■□□□□ 10.6
CDC40O60508 HNRNPH3-210ENST00000490442 1521 ntTSL 213□□□□□ -0.332e-6■□□□□ 10.6
CDC40O60508 HNRNPH3-211ENST00000491200 2308 ntTSL 1 (best)12.74□□□□□ -0.372e-6■□□□□ 10.6
CDC40O60508 SF1-201ENST00000227503 2850 ntAPPRIS P3 TSL 1 (best) BASIC12.67□□□□□ -0.381e-8■□□□□ 10.6
CDC40O60508 SF1-202ENST00000334944 3094 ntTSL 1 (best) BASIC12.5□□□□□ -0.411e-8■□□□□ 10.6
CDC40O60508 SF1-205ENST00000377394 2854 ntTSL 1 (best) BASIC12.38□□□□□ -0.431e-8■□□□□ 10.6
CDC40O60508 HNRNPH3-208ENST00000481819 2704 ntTSL 1 (best)12.12□□□□□ -0.472e-6■□□□□ 10.6
CDC40O60508 SON-201ENST00000300278 7477 ntTSL 1 (best) BASIC12.02□□□□□ -0.492e-6■□□□□ 10.6
CDC40O60508 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC11.99□□□□□ -0.491e-8■□□□□ 10.6
CDC40O60508 SRC-203ENST00000373567 4321 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.572e-6■□□□□ 10.6
CDC40O60508 SRC-207ENST00000477066 3300 ntTSL 211.08□□□□□ -0.642e-6■□□□□ 10.6
CDC40O60508 SF1-204ENST00000377390 3470 ntAPPRIS ALT1 TSL 1 (best) BASIC11.05□□□□□ -0.641e-8■□□□□ 10.6
CDC40O60508 MCM4-202ENST00000517709 842 ntTSL 210.94□□□□□ -0.661e-8■□□□□ 10.6
CDC40O60508 MCM4-208ENST00000519470 498 ntTSL 210.93□□□□□ -0.661e-8■□□□□ 10.6
CDC40O60508 MCM4-205ENST00000518680 862 ntTSL 510.88□□□□□ -0.671e-8■□□□□ 10.6
CDC40O60508 PRRC2A-203ENST00000460302 697 ntTSL 310.77□□□□□ -0.692e-6■□□□□ 10.6
CDC40O60508 SRC-201ENST00000358208 3851 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.72e-6■□□□□ 10.6
CDC40O60508 MCM4-209ENST00000520637 839 ntTSL 210.02□□□□□ -0.811e-8■□□□□ 10.6
CDC40O60508 SF3B3-204ENST00000563739 1105 ntTSL 29.67□□□□□ -0.862e-6■□□□□ 10.6
CDC40O60508 HNRNPH3-205ENST00000469172 3356 ntTSL 29.22□□□□□ -0.932e-6■□□□□ 10.6
CDC40O60508 SF1-219ENST00000496969 455 ntTSL 37.82□□□□□ -1.161e-8■□□□□ 10.6
CDC40O60508 SF1-218ENST00000489544 584 ntTSL 27.55□□□□□ -1.21e-8■□□□□ 10.6
CDC40O60508 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.212e-6■□□□□ 10.6
CDC40O60508 ATXN1-206ENST00000483591 892 ntTSL 1 (best)7.51□□□□□ -1.212e-6■□□□□ 10.6
CDC40O60508 NPM1-207ENST00000521260 510 ntTSL 24.78□□□□□ -1.641e-8■□□□□ 10.6
CDC40O60508 SF1-217ENST00000486960 719 ntTSL 24.76□□□□□ -1.651e-8■□□□□ 10.6
Retrieved 100 of 5,364 protein–RNA pairs in 85.9 ms