RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 NISCHQ9Y2I1 1504 aa27.14■■□□□ 1.94
SF3B3-204ENST00000563739 ABCC9O60706 1549 aa24.81■■□□□ 1.56
SF3B3-204ENST00000563739 CCDC180Q9P1Z9 1646 aa24.57■■□□□ 1.52
SF3B3-204ENST00000563739 DNAJC5BQ9UF47 199 aa23.66■■□□□ 1.38
SF3B3-204ENST00000563739 RB1CC1Q8TDY2 1594 aa23.45■■□□□ 1.34
SF3B3-204ENST00000563739 NACADO15069 1562 aa23.21■■□□□ 1.31
SF3B3-204ENST00000563739 UNC13AQ9UPW8 1703 aa23.15■■□□□ 1.3
SF3B3-204ENST00000563739 BICRAQ9NZM4 1560 aa22.98■■□□□ 1.27
SF3B3-204ENST00000563739 PABPN1Q86U42 306 aaKnown RBP eCLIP22.95■■□□□ 1.26
SF3B3-204ENST00000563739 MYO15BQ96JP2 1530 aa22.82■■□□□ 1.24
SF3B3-204ENST00000563739 DCAF8L2P0C7V8 631 aa22.69■■□□□ 1.22
SF3B3-204ENST00000563739 ZCCHC6Q5VYS8 1495 aaKnown RBP22.47■■□□□ 1.19
SF3B3-204ENST00000563739 SHROOM4Q9ULL8 1493 aa22.47■■□□□ 1.19
SF3B3-204ENST00000563739 CC2D2AQ9P2K1 1620 aa22.46■■□□□ 1.19
SF3B3-204ENST00000563739 DNAJC5Q9H3Z4 198 aa22.44■■□□□ 1.18
SF3B3-204ENST00000563739 DCAF1Q9Y4B6 1507 aa22.41■■□□□ 1.18
SF3B3-204ENST00000563739 CECR2Q9BXF3 1484 aa22.37■■□□□ 1.17
SF3B3-204ENST00000563739 EIF4G1Q04637 1599 aaKnown RBP22.33■■□□□ 1.17
SF3B3-204ENST00000563739 SCRIBQ14160 1630 aa22.33■■□□□ 1.17
SF3B3-204ENST00000563739 CUX2O14529 1486 aa21.52■■□□□ 1.03
SF3B3-204ENST00000563739 NCAPD3P42695 1498 aa21.44■■□□□ 1.02
SF3B3-204ENST00000563739 ATAD2BQ9ULI0 1458 aa21.35■■□□□ 1.01
SF3B3-204ENST00000563739 ERCC6Q03468 1493 aa21.32■■□□□ 1
SF3B3-204ENST00000563739 HMGXB3Q12766 1538 aa21.31■■□□□ 1
SF3B3-204ENST00000563739 NESP48681 1621 aa21.29■■□□□ 1
SF3B3-204ENST00000563739 SMARCA4P51532 1647 aa21.29■■□□□ 1
SF3B3-204ENST00000563739 THOC2Q8NI27 1593 aaKnown RBP21.23■□□□□ 0.99
SF3B3-204ENST00000563739 SMARCA2P51531 1590 aa21.21■□□□□ 0.99
SF3B3-204ENST00000563739 PEG3Q9GZU2 1588 aa21.12■□□□□ 0.97
SF3B3-204ENST00000563739 KIF21AQ7Z4S6 1674 aa21.05■□□□□ 0.96
SF3B3-204ENST00000563739 BAZ1BQ9UIG0 1483 aaKnown RBP21.05■□□□□ 0.96
SF3B3-204ENST00000563739 BAZ1AQ9NRL2 1556 aaPredicted RBP21.05■□□□□ 0.96
SF3B3-204ENST00000563739 LAMC3Q9Y6N6 1575 aa21.02■□□□□ 0.96
SF3B3-204ENST00000563739 MROH2BQ7Z745 1585 aa20.96■□□□□ 0.95
SF3B3-204ENST00000563739 TRIM41Q8WV44 630 aa20.88■□□□□ 0.93
SF3B3-204ENST00000563739 WDR62O43379 1518 aa20.78■□□□□ 0.92
SF3B3-204ENST00000563739 PDS5BQ9NTI5 1447 aa20.78■□□□□ 0.92
SF3B3-204ENST00000563739 MRC2Q9UBG0 1479 aa20.74■□□□□ 0.91
SF3B3-204ENST00000563739 CADPSQ9ULU8 1353 aa20.71■□□□□ 0.91
SF3B3-204ENST00000563739 WIZO95785 1651 aa20.69■□□□□ 0.9
SF3B3-204ENST00000563739 CEP164Q9UPV0 1460 aa20.55■□□□□ 0.88
SF3B3-204ENST00000563739 FANCD2Q9BXW9 1451 aa20.51■□□□□ 0.87
SF3B3-204ENST00000563739 CFTRP13569 1480 aa20.48■□□□□ 0.87
SF3B3-204ENST00000563739 URB2Q14146 1524 aaKnown RBP20.48■□□□□ 0.87
SF3B3-204ENST00000563739 TOP2AP11388 1531 aaKnown RBP20.37■□□□□ 0.85
SF3B3-204ENST00000563739 PRDM2Q13029 1718 aa20.36■□□□□ 0.85
SF3B3-204ENST00000563739 RIMBP3CA6NJZ7 1639 aa20.35■□□□□ 0.85
SF3B3-204ENST00000563739 RIMBP3BA6NNM3 1639 aa20.35■□□□□ 0.85
SF3B3-204ENST00000563739 RIMBP3Q9UFD9 1639 aa20.35■□□□□ 0.85
SF3B3-204ENST00000563739 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.84
SF3B3-204ENST00000563739 OSCARQ8IYS5 282 aa20.28■□□□□ 0.84
SF3B3-204ENST00000563739 ZNF608Q9ULD9 1512 aaPredicted RBP20.27■□□□□ 0.83
SF3B3-204ENST00000563739 ARHGEF11O15085 1522 aa20.21■□□□□ 0.83
SF3B3-204ENST00000563739 EIF4G3O43432 1585 aaKnown RBP20.16■□□□□ 0.82
SF3B3-204ENST00000563739 IFT140Q96RY7 1462 aa20.15■□□□□ 0.82
SF3B3-204ENST00000563739 TOPBP1Q92547 1522 aa20.13■□□□□ 0.81
SF3B3-204ENST00000563739 CCDC88BA6NC98 1476 aa20.11■□□□□ 0.81
SF3B3-204ENST00000563739 CHD1O14646 1710 aa20.09■□□□□ 0.81
SF3B3-204ENST00000563739 TARBP1Q13395 1621 aaKnown RBP20.07■□□□□ 0.8
SF3B3-204ENST00000563739 DNMBPQ6XZF7 1577 aa20.04■□□□□ 0.8
SF3B3-204ENST00000563739 ARAP1Q96P48 1450 aa20.02■□□□□ 0.8
SF3B3-204ENST00000563739 AEBP2Q6ZN18 517 aaPredicted RBP19.98■□□□□ 0.79
SF3B3-204ENST00000563739 AQRO60306 1485 aaKnown RBP eCLIP19.94■□□□□ 0.787e-8■■■■■ 35.5
SF3B3-204ENST00000563739 POLA1P09884 1462 aaPredicted RBP19.92■□□□□ 0.78
SF3B3-204ENST00000563739 ABCC8Q09428 1581 aa19.91■□□□□ 0.78
SF3B3-204ENST00000563739 CLASP1Q7Z460 1538 aa19.86■□□□□ 0.77
SF3B3-204ENST00000563739 CYB5RLQ6IPT4 315 aa19.85■□□□□ 0.77
SF3B3-204ENST00000563739 RAD54L2Q9Y4B4 1467 aa19.84■□□□□ 0.77
SF3B3-204ENST00000563739 SNAPC4Q5SXM2 1469 aa19.77■□□□□ 0.76
SF3B3-204ENST00000563739 WDR97A6NE52 1622 aa19.76■□□□□ 0.75
SF3B3-204ENST00000563739 TDRD9Q8NDG6 1382 aaKnown RBP19.72■□□□□ 0.75
SF3B3-204ENST00000563739 FGD5Q6ZNL6 1462 aa19.72■□□□□ 0.75
SF3B3-204ENST00000563739 CUX1P39880 1505 aa19.71■□□□□ 0.75
SF3B3-204ENST00000563739 SOGA1O94964 1423 aa19.68■□□□□ 0.74
SF3B3-204ENST00000563739 SYNJ1O43426 1573 aa19.66■□□□□ 0.74
SF3B3-204ENST00000563739 MAGI1Q96QZ7 1491 aaPredicted RBP19.66■□□□□ 0.74
SF3B3-204ENST00000563739 TRHP20396 242 aaPredicted RBP19.65■□□□□ 0.74
SF3B3-204ENST00000563739 FBLN2P98095 1184 aa19.65■□□□□ 0.74
SF3B3-204ENST00000563739 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
SF3B3-204ENST00000563739 CHIC1Q5VXU3 224 aa19.63■□□□□ 0.73
SF3B3-204ENST00000563739 GRIN2BQ13224 1484 aa19.6■□□□□ 0.73
SF3B3-204ENST00000563739 SYNJ2O15056 1496 aa19.6■□□□□ 0.73
SF3B3-204ENST00000563739 ABCA5Q8WWZ7 1642 aa19.58■□□□□ 0.72
SF3B3-204ENST00000563739 ERCC6L2Q5T890 1561 aa19.56■□□□□ 0.72
SF3B3-204ENST00000563739 GAPVD1Q14C86 1478 aa19.54■□□□□ 0.72
SF3B3-204ENST00000563739 ABCA10Q8WWZ4 1543 aa19.48■□□□□ 0.71
SF3B3-204ENST00000563739 CHMP7Q8WUX9 453 aaPredicted RBP19.47■□□□□ 0.71
SF3B3-204ENST00000563739 ILDR1Q86SU0 546 aaPredicted RBP19.44■□□□□ 0.7
SF3B3-204ENST00000563739 ADAMTS12P58397 1594 aa19.44■□□□□ 0.7
SF3B3-204ENST00000563739 CEP170Q5SW79 1584 aa19.44■□□□□ 0.7
SF3B3-204ENST00000563739 SHROOM2Q13796 1616 aa19.42■□□□□ 0.7
SF3B3-204ENST00000563739 GRIN2AQ12879 1464 aa19.4■□□□□ 0.7
SF3B3-204ENST00000563739 NUP160Q12769 1436 aa19.39■□□□□ 0.69
SF3B3-204ENST00000563739 KIF13AQ9H1H9 1805 aa19.38■□□□□ 0.69
SF3B3-204ENST00000563739 BIVM-ERCC5R4GMW8 1640 aa19.32■□□□□ 0.68
SF3B3-204ENST00000563739 TOP2BQ02880 1626 aa19.27■□□□□ 0.68
SF3B3-204ENST00000563739 FHAD1B1AJZ9 1412 aa19.21■□□□□ 0.67
SF3B3-204ENST00000563739 ERICH3Q5RHP9 1530 aa19.2■□□□□ 0.66
SF3B3-204ENST00000563739 WRNQ14191 1432 aaPredicted RBP eCLIP19.19■□□□□ 0.66
SF3B3-204ENST00000563739 RUSC2Q8N2Y8 1516 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 202.7 ms