Protein–RNA interactions for Protein: Q9H9A6

LRRC40, Leucine-rich repeat-containing protein 40, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC40Q9H9A6 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC27.63■■■□□ 2.01
LRRC40Q9H9A6 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC27.62■■■□□ 2.01
LRRC40Q9H9A6 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC27.61■■■□□ 2.01
LRRC40Q9H9A6 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC27.59■■■□□ 2.01
LRRC40Q9H9A6 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC27.57■■■□□ 2
LRRC40Q9H9A6 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC27.57■■■□□ 2
LRRC40Q9H9A6 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.57■■■□□ 2
LRRC40Q9H9A6 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC27.55■■■□□ 2
LRRC40Q9H9A6 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC27.55■■■□□ 2
LRRC40Q9H9A6 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC27.54■■■□□ 2
LRRC40Q9H9A6 KLF16-203ENST00000592313 508 ntTSL 3 BASIC27.54■■■□□ 2
LRRC40Q9H9A6 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC27.52■■■□□ 2
LRRC40Q9H9A6 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC27.52■■■□□ 2
LRRC40Q9H9A6 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC27.51■■□□□ 1.99
LRRC40Q9H9A6 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC27.5■■□□□ 1.99
LRRC40Q9H9A6 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC27.5■■□□□ 1.99
LRRC40Q9H9A6 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC27.47■■□□□ 1.99
LRRC40Q9H9A6 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC27.47■■□□□ 1.99
LRRC40Q9H9A6 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC27.45■■□□□ 1.98
LRRC40Q9H9A6 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.43■■□□□ 1.98
LRRC40Q9H9A6 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
LRRC40Q9H9A6 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC27.42■■□□□ 1.98
LRRC40Q9H9A6 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC27.42■■□□□ 1.98
LRRC40Q9H9A6 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC27.42■■□□□ 1.98
LRRC40Q9H9A6 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC27.42■■□□□ 1.98
LRRC40Q9H9A6 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC27.42■■□□□ 1.98
LRRC40Q9H9A6 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC27.41■■□□□ 1.98
LRRC40Q9H9A6 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC27.4■■□□□ 1.98
LRRC40Q9H9A6 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC27.4■■□□□ 1.98
LRRC40Q9H9A6 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC27.4■■□□□ 1.98
LRRC40Q9H9A6 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC27.39■■□□□ 1.98
LRRC40Q9H9A6 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
LRRC40Q9H9A6 AL133380.1-201ENST00000506013 324 ntBASIC27.37■■□□□ 1.97
LRRC40Q9H9A6 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC27.36■■□□□ 1.97
LRRC40Q9H9A6 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
LRRC40Q9H9A6 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC27.34■■□□□ 1.97
LRRC40Q9H9A6 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC27.33■■□□□ 1.96
LRRC40Q9H9A6 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.96
LRRC40Q9H9A6 AL161658.1-201ENST00000623641 1967 ntBASIC27.31■■□□□ 1.96
LRRC40Q9H9A6 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC27.31■■□□□ 1.96
LRRC40Q9H9A6 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC27.3■■□□□ 1.96
LRRC40Q9H9A6 RARRES2P7-201ENST00000567349 469 ntBASIC27.3■■□□□ 1.96
LRRC40Q9H9A6 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC27.3■■□□□ 1.96
LRRC40Q9H9A6 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC27.28■■□□□ 1.96
LRRC40Q9H9A6 WASH5P-204ENST00000632292 975 ntBASIC27.28■■□□□ 1.96
LRRC40Q9H9A6 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
LRRC40Q9H9A6 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
LRRC40Q9H9A6 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
LRRC40Q9H9A6 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC27.26■■□□□ 1.95
LRRC40Q9H9A6 ABCB10P1-201ENST00000614297 2181 ntBASIC27.26■■□□□ 1.95
LRRC40Q9H9A6 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
LRRC40Q9H9A6 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
LRRC40Q9H9A6 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC27.25■■□□□ 1.95
LRRC40Q9H9A6 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
LRRC40Q9H9A6 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
LRRC40Q9H9A6 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
LRRC40Q9H9A6 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
LRRC40Q9H9A6 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
LRRC40Q9H9A6 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
LRRC40Q9H9A6 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC27.21■■□□□ 1.95
LRRC40Q9H9A6 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
LRRC40Q9H9A6 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC27.21■■□□□ 1.95
LRRC40Q9H9A6 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC27.2■■□□□ 1.94
LRRC40Q9H9A6 SETD8P1-201ENST00000623146 1180 ntBASIC27.2■■□□□ 1.94
LRRC40Q9H9A6 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC27.2■■□□□ 1.94
LRRC40Q9H9A6 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC27.19■■□□□ 1.94
LRRC40Q9H9A6 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
LRRC40Q9H9A6 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC27.17■■□□□ 1.94
LRRC40Q9H9A6 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
LRRC40Q9H9A6 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
LRRC40Q9H9A6 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
LRRC40Q9H9A6 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
LRRC40Q9H9A6 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
LRRC40Q9H9A6 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC27.15■■□□□ 1.94
LRRC40Q9H9A6 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
LRRC40Q9H9A6 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.93
LRRC40Q9H9A6 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
LRRC40Q9H9A6 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
LRRC40Q9H9A6 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC27.13■■□□□ 1.93
LRRC40Q9H9A6 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
LRRC40Q9H9A6 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
LRRC40Q9H9A6 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
LRRC40Q9H9A6 HOXB3-211ENST00000490677 1109 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
LRRC40Q9H9A6 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
LRRC40Q9H9A6 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC27.1■■□□□ 1.93
LRRC40Q9H9A6 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
LRRC40Q9H9A6 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
LRRC40Q9H9A6 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC27.09■■□□□ 1.93
LRRC40Q9H9A6 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC27.08■■□□□ 1.93
LRRC40Q9H9A6 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC27.08■■□□□ 1.93
LRRC40Q9H9A6 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC27.08■■□□□ 1.93
LRRC40Q9H9A6 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC27.07■■□□□ 1.92
LRRC40Q9H9A6 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC27.07■■□□□ 1.92
LRRC40Q9H9A6 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC27.06■■□□□ 1.92
LRRC40Q9H9A6 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC27.06■■□□□ 1.92
LRRC40Q9H9A6 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.92
LRRC40Q9H9A6 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC27.05■■□□□ 1.92
LRRC40Q9H9A6 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC27.05■■□□□ 1.92
LRRC40Q9H9A6 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
LRRC40Q9H9A6 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.05■■□□□ 1.92
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms