Protein–RNA interactions for Protein: Q9H1E3

NUCKS1, Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1, humanhuman

Known RBP Predictions only

Length 243 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUCKS1Q9H1E3 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
NUCKS1Q9H1E3 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
NUCKS1Q9H1E3 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
NUCKS1Q9H1E3 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC29.4■■■□□ 2.3
NUCKS1Q9H1E3 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC29.39■■■□□ 2.3
NUCKS1Q9H1E3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
NUCKS1Q9H1E3 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC29.36■■■□□ 2.29
NUCKS1Q9H1E3 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.34■■■□□ 2.29
NUCKS1Q9H1E3 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC29.34■■■□□ 2.29
NUCKS1Q9H1E3 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.33■■■□□ 2.29
NUCKS1Q9H1E3 ABCB10P1-201ENST00000614297 2181 ntBASIC29.32■■■□□ 2.28
NUCKS1Q9H1E3 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
NUCKS1Q9H1E3 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC29.29■■■□□ 2.28
NUCKS1Q9H1E3 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.27■■■□□ 2.28
NUCKS1Q9H1E3 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
NUCKS1Q9H1E3 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC29.26■■■□□ 2.28
NUCKS1Q9H1E3 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC29.26■■■□□ 2.27
NUCKS1Q9H1E3 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC29.25■■■□□ 2.27
NUCKS1Q9H1E3 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
NUCKS1Q9H1E3 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC29.24■■■□□ 2.27
NUCKS1Q9H1E3 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC29.24■■■□□ 2.27
NUCKS1Q9H1E3 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
NUCKS1Q9H1E3 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
NUCKS1Q9H1E3 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.22■■■□□ 2.27
NUCKS1Q9H1E3 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
NUCKS1Q9H1E3 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.21■■■□□ 2.27
NUCKS1Q9H1E3 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
NUCKS1Q9H1E3 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
NUCKS1Q9H1E3 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.2■■■□□ 2.27
NUCKS1Q9H1E3 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
NUCKS1Q9H1E3 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC29.2■■■□□ 2.26
NUCKS1Q9H1E3 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC29.19■■■□□ 2.26
NUCKS1Q9H1E3 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
NUCKS1Q9H1E3 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
NUCKS1Q9H1E3 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
NUCKS1Q9H1E3 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
NUCKS1Q9H1E3 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 MAPK13-201ENST00000211287 2052 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC29.15■■■□□ 2.26
NUCKS1Q9H1E3 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
NUCKS1Q9H1E3 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC29.13■■■□□ 2.25
NUCKS1Q9H1E3 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
NUCKS1Q9H1E3 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC29.12■■■□□ 2.25
NUCKS1Q9H1E3 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
NUCKS1Q9H1E3 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC29.11■■■□□ 2.25
NUCKS1Q9H1E3 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
NUCKS1Q9H1E3 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
NUCKS1Q9H1E3 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
NUCKS1Q9H1E3 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 ABCB10P3-201ENST00000561950 2166 ntBASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC29.09■■■□□ 2.25
NUCKS1Q9H1E3 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
NUCKS1Q9H1E3 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.07■■■□□ 2.24
NUCKS1Q9H1E3 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 TPI1-201ENST00000229270 1763 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
NUCKS1Q9H1E3 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
NUCKS1Q9H1E3 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
NUCKS1Q9H1E3 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC29.05■■■□□ 2.24
NUCKS1Q9H1E3 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC29.04■■■□□ 2.24
NUCKS1Q9H1E3 AL161658.1-201ENST00000623641 1967 ntBASIC29.04■■■□□ 2.24
NUCKS1Q9H1E3 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC29.03■■■□□ 2.24
NUCKS1Q9H1E3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC29.03■■■□□ 2.24
NUCKS1Q9H1E3 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
NUCKS1Q9H1E3 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC29.02■■■□□ 2.24
NUCKS1Q9H1E3 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.02■■■□□ 2.24
NUCKS1Q9H1E3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC28.99■■■□□ 2.23
NUCKS1Q9H1E3 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
NUCKS1Q9H1E3 ST7-AS1-201ENST00000456775 1889 ntBASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC28.97■■■□□ 2.23
NUCKS1Q9H1E3 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC28.96■■■□□ 2.23
NUCKS1Q9H1E3 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC28.96■■■□□ 2.23
NUCKS1Q9H1E3 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC28.96■■■□□ 2.23
NUCKS1Q9H1E3 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC28.95■■■□□ 2.22
NUCKS1Q9H1E3 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
NUCKS1Q9H1E3 RARRES2P7-201ENST00000567349 469 ntBASIC28.94■■■□□ 2.22
NUCKS1Q9H1E3 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.93■■■□□ 2.22
NUCKS1Q9H1E3 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
NUCKS1Q9H1E3 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
NUCKS1Q9H1E3 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 KLF16-203ENST00000592313 508 ntTSL 3 BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC28.92■■■□□ 2.22
NUCKS1Q9H1E3 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
NUCKS1Q9H1E3 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC28.9■■■□□ 2.22
NUCKS1Q9H1E3 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.89■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms