Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.06■■■□□ 2.72
ZKSCAN3Q9BRR0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
ZKSCAN3Q9BRR0 WASH5P-204ENST00000632292 975 ntBASIC32.05■■■□□ 2.72
ZKSCAN3Q9BRR0 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
ZKSCAN3Q9BRR0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
ZKSCAN3Q9BRR0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.04■■■□□ 2.72
ZKSCAN3Q9BRR0 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC32.04■■■□□ 2.72
ZKSCAN3Q9BRR0 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
ZKSCAN3Q9BRR0 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
ZKSCAN3Q9BRR0 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
ZKSCAN3Q9BRR0 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
ZKSCAN3Q9BRR0 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
ZKSCAN3Q9BRR0 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC32.01■■■□□ 2.71
ZKSCAN3Q9BRR0 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC32.01■■■□□ 2.71
ZKSCAN3Q9BRR0 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC32.01■■■□□ 2.71
ZKSCAN3Q9BRR0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
ZKSCAN3Q9BRR0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32■■■□□ 2.71
ZKSCAN3Q9BRR0 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
ZKSCAN3Q9BRR0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31.98■■■□□ 2.71
ZKSCAN3Q9BRR0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.98■■■□□ 2.71
ZKSCAN3Q9BRR0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.97■■■□□ 2.71
ZKSCAN3Q9BRR0 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
ZKSCAN3Q9BRR0 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC31.96■■■□□ 2.71
ZKSCAN3Q9BRR0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
ZKSCAN3Q9BRR0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
ZKSCAN3Q9BRR0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
ZKSCAN3Q9BRR0 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.93■■■□□ 2.7
ZKSCAN3Q9BRR0 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.93■■■□□ 2.7
ZKSCAN3Q9BRR0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
ZKSCAN3Q9BRR0 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.91■■■□□ 2.7
ZKSCAN3Q9BRR0 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
ZKSCAN3Q9BRR0 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.89■■■□□ 2.69
ZKSCAN3Q9BRR0 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC31.88■■■□□ 2.69
ZKSCAN3Q9BRR0 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.87■■■□□ 2.69
ZKSCAN3Q9BRR0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
ZKSCAN3Q9BRR0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.86■■■□□ 2.69
ZKSCAN3Q9BRR0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC31.84■■■□□ 2.69
ZKSCAN3Q9BRR0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.84■■■□□ 2.69
ZKSCAN3Q9BRR0 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
ZKSCAN3Q9BRR0 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC31.83■■■□□ 2.69
ZKSCAN3Q9BRR0 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
ZKSCAN3Q9BRR0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.81■■■□□ 2.68
ZKSCAN3Q9BRR0 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
ZKSCAN3Q9BRR0 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
ZKSCAN3Q9BRR0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
ZKSCAN3Q9BRR0 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC31.75■■■□□ 2.67
ZKSCAN3Q9BRR0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
ZKSCAN3Q9BRR0 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
ZKSCAN3Q9BRR0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
ZKSCAN3Q9BRR0 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.7■■■□□ 2.66
ZKSCAN3Q9BRR0 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
ZKSCAN3Q9BRR0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.69■■■□□ 2.66
ZKSCAN3Q9BRR0 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.69■■■□□ 2.66
ZKSCAN3Q9BRR0 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
ZKSCAN3Q9BRR0 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.69■■■□□ 2.66
ZKSCAN3Q9BRR0 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
ZKSCAN3Q9BRR0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
ZKSCAN3Q9BRR0 AL161658.1-201ENST00000623641 1967 ntBASIC31.68■■■□□ 2.66
ZKSCAN3Q9BRR0 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
ZKSCAN3Q9BRR0 MIR762-201ENST00000390236 83 ntBASIC31.66■■■□□ 2.66
ZKSCAN3Q9BRR0 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
ZKSCAN3Q9BRR0 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.65■■■□□ 2.66
ZKSCAN3Q9BRR0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
ZKSCAN3Q9BRR0 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
ZKSCAN3Q9BRR0 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
ZKSCAN3Q9BRR0 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
ZKSCAN3Q9BRR0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.62■■■□□ 2.65
ZKSCAN3Q9BRR0 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
ZKSCAN3Q9BRR0 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
ZKSCAN3Q9BRR0 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
ZKSCAN3Q9BRR0 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
ZKSCAN3Q9BRR0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.6■■■□□ 2.65
ZKSCAN3Q9BRR0 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
ZKSCAN3Q9BRR0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.59■■■□□ 2.65
ZKSCAN3Q9BRR0 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
ZKSCAN3Q9BRR0 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC31.58■■■□□ 2.65
ZKSCAN3Q9BRR0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
ZKSCAN3Q9BRR0 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
ZKSCAN3Q9BRR0 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.58■■■□□ 2.65
ZKSCAN3Q9BRR0 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.58■■■□□ 2.65
ZKSCAN3Q9BRR0 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
ZKSCAN3Q9BRR0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.57■■■□□ 2.64
ZKSCAN3Q9BRR0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
ZKSCAN3Q9BRR0 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.57■■■□□ 2.64
ZKSCAN3Q9BRR0 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.56■■■□□ 2.64
ZKSCAN3Q9BRR0 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
ZKSCAN3Q9BRR0 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.54■■■□□ 2.64
ZKSCAN3Q9BRR0 AL162393.1-201ENST00000437852 946 ntBASIC31.54■■■□□ 2.64
ZKSCAN3Q9BRR0 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
ZKSCAN3Q9BRR0 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.53■■■□□ 2.64
ZKSCAN3Q9BRR0 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
ZKSCAN3Q9BRR0 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
ZKSCAN3Q9BRR0 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms