Protein–RNA interactions for Protein: Q8N684

CPSF7, Cleavage and polyadenylation specificity factor subunit 7, humanhuman

Known RBP Predictions only

Length 471 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7Q8N684 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPSF7Q8N684 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC26.53■■□□□ 1.84
CPSF7Q8N684 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.53■■□□□ 1.84
CPSF7Q8N684 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC26.53■■□□□ 1.84
CPSF7Q8N684 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
CPSF7Q8N684 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CPSF7Q8N684 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC26.51■■□□□ 1.83
CPSF7Q8N684 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CPSF7Q8N684 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CPSF7Q8N684 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
CPSF7Q8N684 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
CPSF7Q8N684 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC26.47■■□□□ 1.83
CPSF7Q8N684 AL031258.1-201ENST00000623562 325 ntBASIC26.46■■□□□ 1.83
CPSF7Q8N684 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
CPSF7Q8N684 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CPSF7Q8N684 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC26.45■■□□□ 1.83
CPSF7Q8N684 TPRA1-202ENST00000355552 1933 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
CPSF7Q8N684 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CPSF7Q8N684 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CPSF7Q8N684 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC26.44■■□□□ 1.82
CPSF7Q8N684 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC26.44■■□□□ 1.82
CPSF7Q8N684 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
CPSF7Q8N684 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC26.43■■□□□ 1.82
CPSF7Q8N684 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.42■■□□□ 1.82
CPSF7Q8N684 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CPSF7Q8N684 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CPSF7Q8N684 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
CPSF7Q8N684 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CPSF7Q8N684 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC26.39■■□□□ 1.81
CPSF7Q8N684 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CPSF7Q8N684 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.38■■□□□ 1.81
CPSF7Q8N684 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
CPSF7Q8N684 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
CPSF7Q8N684 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.35■■□□□ 1.81
CPSF7Q8N684 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
CPSF7Q8N684 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC26.32■■□□□ 1.8
CPSF7Q8N684 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
CPSF7Q8N684 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC26.31■■□□□ 1.8
CPSF7Q8N684 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CPSF7Q8N684 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
CPSF7Q8N684 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CPSF7Q8N684 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC26.3■■□□□ 1.8
CPSF7Q8N684 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.28■■□□□ 1.8
CPSF7Q8N684 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.28■■□□□ 1.8
CPSF7Q8N684 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CPSF7Q8N684 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CPSF7Q8N684 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CPSF7Q8N684 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.26■■□□□ 1.79
CPSF7Q8N684 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CPSF7Q8N684 AC139426.1-201ENST00000568218 2529 ntBASIC26.24■■□□□ 1.79
CPSF7Q8N684 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
CPSF7Q8N684 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CPSF7Q8N684 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
CPSF7Q8N684 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.22■■□□□ 1.79
CPSF7Q8N684 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CPSF7Q8N684 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CPSF7Q8N684 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CPSF7Q8N684 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CPSF7Q8N684 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CPSF7Q8N684 MVK-208ENST00000539696 608 ntTSL 5 BASIC26.2■■□□□ 1.78
CPSF7Q8N684 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC26.2■■□□□ 1.78
CPSF7Q8N684 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CPSF7Q8N684 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
CPSF7Q8N684 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
CPSF7Q8N684 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC26.16■■□□□ 1.78
CPSF7Q8N684 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
CPSF7Q8N684 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
CPSF7Q8N684 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC26.14■■□□□ 1.78
CPSF7Q8N684 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
CPSF7Q8N684 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
CPSF7Q8N684 ST7-AS1-201ENST00000456775 1889 ntBASIC26.13■■□□□ 1.77
CPSF7Q8N684 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
CPSF7Q8N684 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC26.13■■□□□ 1.77
CPSF7Q8N684 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC26.13■■□□□ 1.77
CPSF7Q8N684 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC26.13■■□□□ 1.77
CPSF7Q8N684 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC26.12■■□□□ 1.77
CPSF7Q8N684 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
CPSF7Q8N684 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CPSF7Q8N684 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC26.1■■□□□ 1.77
CPSF7Q8N684 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.1■■□□□ 1.77
CPSF7Q8N684 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
CPSF7Q8N684 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CPSF7Q8N684 EBPL-203ENST00000378270 579 ntTSL 2 BASIC26.07■■□□□ 1.76
CPSF7Q8N684 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC26.07■■□□□ 1.76
CPSF7Q8N684 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC26.06■■□□□ 1.76
CPSF7Q8N684 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CPSF7Q8N684 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
CPSF7Q8N684 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
CPSF7Q8N684 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CPSF7Q8N684 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CPSF7Q8N684 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CPSF7Q8N684 LFNG-203ENST00000359574 1377 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CPSF7Q8N684 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CPSF7Q8N684 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC26.02■■□□□ 1.76
CPSF7Q8N684 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC26.02■■□□□ 1.76
CPSF7Q8N684 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
CPSF7Q8N684 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CPSF7Q8N684 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26■■□□□ 1.75
CPSF7Q8N684 RARRES2P7-201ENST00000567349 469 ntBASIC25.99■■□□□ 1.75
CPSF7Q8N684 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms