Protein–RNA interactions for Protein: Q8N139

ABCA6, ATP-binding cassette sub-family A member 6, humanhuman

Predictions only

Length 1,617 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA6Q8N139 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC41.66■■■■■ 4.26
ABCA6Q8N139 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC41.65■■■■■ 4.26
ABCA6Q8N139 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC41.64■■■■■ 4.26
ABCA6Q8N139 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC41.64■■■■■ 4.26
ABCA6Q8N139 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC41.63■■■■■ 4.25
ABCA6Q8N139 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC41.62■■■■■ 4.25
ABCA6Q8N139 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC41.61■■■■■ 4.25
ABCA6Q8N139 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC41.6■■■■■ 4.25
ABCA6Q8N139 RPS2-209ENST00000529806 993 ntTSL 3 BASIC41.6■■■■■ 4.25
ABCA6Q8N139 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC41.59■■■■■ 4.25
ABCA6Q8N139 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC41.58■■■■■ 4.25
ABCA6Q8N139 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC41.58■■■■■ 4.25
ABCA6Q8N139 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC41.58■■■■■ 4.25
ABCA6Q8N139 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC41.57■■■■■ 4.25
ABCA6Q8N139 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC41.56■■■■■ 4.24
ABCA6Q8N139 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC41.54■■■■■ 4.24
ABCA6Q8N139 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC41.54■■■■■ 4.24
ABCA6Q8N139 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC41.52■■■■■ 4.24
ABCA6Q8N139 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC41.52■■■■■ 4.24
ABCA6Q8N139 WASH5P-204ENST00000632292 975 ntBASIC41.51■■■■■ 4.24
ABCA6Q8N139 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC41.5■■■■■ 4.23
ABCA6Q8N139 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC41.5■■■■■ 4.23
ABCA6Q8N139 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC41.49■■■■■ 4.23
ABCA6Q8N139 MIR4449-201ENST00000578365 66 ntBASIC41.49■■■■■ 4.23
ABCA6Q8N139 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC41.47■■■■■ 4.23
ABCA6Q8N139 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC41.47■■■■■ 4.23
ABCA6Q8N139 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC41.46■■■■■ 4.23
ABCA6Q8N139 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC41.46■■■■■ 4.23
ABCA6Q8N139 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC41.45■■■■■ 4.23
ABCA6Q8N139 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC41.44■■■■■ 4.22
ABCA6Q8N139 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC41.43■■■■■ 4.22
ABCA6Q8N139 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC41.43■■■■■ 4.22
ABCA6Q8N139 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC41.41■■■■■ 4.22
ABCA6Q8N139 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC41.4■■■■■ 4.22
ABCA6Q8N139 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC41.39■■■■■ 4.22
ABCA6Q8N139 MACF1-219ENST00000484793 834 ntTSL 2 BASIC41.38■■■■■ 4.21
ABCA6Q8N139 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC41.38■■■■■ 4.21
ABCA6Q8N139 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC41.37■■■■■ 4.21
ABCA6Q8N139 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC41.36■■■■■ 4.21
ABCA6Q8N139 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC41.36■■■■■ 4.21
ABCA6Q8N139 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC41.36■■■■■ 4.21
ABCA6Q8N139 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC41.36■■■■■ 4.21
ABCA6Q8N139 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC41.33■■■■■ 4.21
ABCA6Q8N139 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC41.32■■■■■ 4.2
ABCA6Q8N139 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC41.29■■■■■ 4.2
ABCA6Q8N139 DUX4L29-201ENST00000425409 679 ntBASIC41.29■■■■■ 4.2
ABCA6Q8N139 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC41.26■■■■■ 4.2
ABCA6Q8N139 MIR639-201ENST00000384974 98 ntBASIC41.26■■■■■ 4.2
ABCA6Q8N139 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC41.25■■■■■ 4.19
ABCA6Q8N139 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC41.24■■■■■ 4.19
ABCA6Q8N139 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC41.22■■■■■ 4.19
ABCA6Q8N139 AC021231.2-201ENST00000594613 730 ntBASIC41.21■■■■■ 4.19
ABCA6Q8N139 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC41.2■■■■■ 4.19
ABCA6Q8N139 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC41.19■■■■■ 4.18
ABCA6Q8N139 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC41.19■■■■■ 4.18
ABCA6Q8N139 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC41.18■■■■■ 4.18
ABCA6Q8N139 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC41.16■■■■■ 4.18
ABCA6Q8N139 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC41.16■■■■■ 4.18
ABCA6Q8N139 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC41.15■■■■■ 4.18
ABCA6Q8N139 HSD17B1P1-201ENST00000590052 955 ntBASIC41.15■■■■■ 4.18
ABCA6Q8N139 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC41.15■■■■■ 4.18
ABCA6Q8N139 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC41.14■■■■■ 4.18
ABCA6Q8N139 RNF166-209ENST00000567844 633 ntTSL 5 BASIC41.14■■■■■ 4.18
ABCA6Q8N139 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC41.13■■■■■ 4.17
ABCA6Q8N139 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC41.12■■■■■ 4.17
ABCA6Q8N139 CR559946.2-201ENST00000623684 991 ntBASIC41.11■■■■■ 4.17
ABCA6Q8N139 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC41.11■■■■■ 4.17
ABCA6Q8N139 AC016575.1-201ENST00000607026 382 ntBASIC41.1■■■■■ 4.17
ABCA6Q8N139 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC41.09■■■■■ 4.17
ABCA6Q8N139 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC41.09■■■■■ 4.17
ABCA6Q8N139 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC41.08■■■■■ 4.17
ABCA6Q8N139 GDI1-215ENST00000630693 786 ntTSL 4 BASIC41.08■■■■■ 4.17
ABCA6Q8N139 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC41.08■■■■■ 4.17
ABCA6Q8N139 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC41.07■■■■■ 4.17
ABCA6Q8N139 MIR3648-2-201ENST00000581792 180 ntBASIC41.07■■■■■ 4.16
ABCA6Q8N139 MIR3648-1-201ENST00000615959 180 ntBASIC41.07■■■■■ 4.16
ABCA6Q8N139 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC41.04■■■■■ 4.16
ABCA6Q8N139 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC41.03■■■■■ 4.16
ABCA6Q8N139 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC41.02■■■■■ 4.16
ABCA6Q8N139 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC40.99■■■■■ 4.15
ABCA6Q8N139 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC40.98■■■■■ 4.15
ABCA6Q8N139 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC40.97■■■■■ 4.15
ABCA6Q8N139 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC40.97■■■■■ 4.15
ABCA6Q8N139 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC40.96■■■■■ 4.15
ABCA6Q8N139 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC40.95■■■■■ 4.15
ABCA6Q8N139 CALM3-209ENST00000597743 577 ntTSL 4 BASIC40.95■■■■■ 4.15
ABCA6Q8N139 BRD4-212ENST00000630599 726 ntTSL 2 BASIC40.94■■■■■ 4.14
ABCA6Q8N139 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC40.93■■■■■ 4.14
ABCA6Q8N139 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC40.92■■■■■ 4.14
ABCA6Q8N139 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC40.91■■■■■ 4.14
ABCA6Q8N139 MIR6090-201ENST00000622481 60 ntBASIC40.91■■■■■ 4.14
ABCA6Q8N139 CIB2-204ENST00000557846 934 ntTSL 3 BASIC40.9■■■■■ 4.14
ABCA6Q8N139 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC40.9■■■■■ 4.14
ABCA6Q8N139 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC40.89■■■■■ 4.14
ABCA6Q8N139 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC40.89■■■■■ 4.14
ABCA6Q8N139 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC40.89■■■■■ 4.14
ABCA6Q8N139 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC40.89■■■■■ 4.14
ABCA6Q8N139 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC40.88■■■■■ 4.13
ABCA6Q8N139 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC40.87■■■■■ 4.13
ABCA6Q8N139 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC40.86■■■■■ 4.13
Retrieved 100 of 98,524 protein–RNA pairs in 12.8 ms