Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
KRT40Q6A162 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
KRT40Q6A162 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
KRT40Q6A162 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
KRT40Q6A162 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.56■■■□□ 2.64
KRT40Q6A162 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
KRT40Q6A162 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
KRT40Q6A162 AC097358.2-201ENST00000607541 1159 ntBASIC31.5■■■□□ 2.63
KRT40Q6A162 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
KRT40Q6A162 RPS2P35-201ENST00000443417 897 ntBASIC31.49■■■□□ 2.63
KRT40Q6A162 KLF16-203ENST00000592313 508 ntTSL 3 BASIC31.49■■■□□ 2.63
KRT40Q6A162 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC31.49■■■□□ 2.63
KRT40Q6A162 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
KRT40Q6A162 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC31.47■■■□□ 2.63
KRT40Q6A162 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC31.45■■■□□ 2.63
KRT40Q6A162 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.45■■■□□ 2.62
KRT40Q6A162 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
KRT40Q6A162 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
KRT40Q6A162 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
KRT40Q6A162 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
KRT40Q6A162 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC31.42■■■□□ 2.62
KRT40Q6A162 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
KRT40Q6A162 AC136428.2-201ENST00000563187 214 ntBASIC31.41■■■□□ 2.62
KRT40Q6A162 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
KRT40Q6A162 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC31.4■■■□□ 2.62
KRT40Q6A162 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.39■■■□□ 2.62
KRT40Q6A162 SUZ12P1-203ENST00000578195 985 ntBASIC31.35■■■□□ 2.61
KRT40Q6A162 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
KRT40Q6A162 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
KRT40Q6A162 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC31.33■■■□□ 2.61
KRT40Q6A162 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
KRT40Q6A162 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC31.32■■■□□ 2.6
KRT40Q6A162 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC31.31■■■□□ 2.6
KRT40Q6A162 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC31.3■■■□□ 2.6
KRT40Q6A162 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
KRT40Q6A162 AL133380.1-201ENST00000506013 324 ntBASIC31.3■■■□□ 2.6
KRT40Q6A162 SETD8P1-201ENST00000623146 1180 ntBASIC31.29■■■□□ 2.6
KRT40Q6A162 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
KRT40Q6A162 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC31.28■■■□□ 2.6
KRT40Q6A162 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC31.28■■■□□ 2.6
KRT40Q6A162 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC31.25■■■□□ 2.59
KRT40Q6A162 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.24■■■□□ 2.59
KRT40Q6A162 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.24■■■□□ 2.59
KRT40Q6A162 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC31.23■■■□□ 2.59
KRT40Q6A162 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
KRT40Q6A162 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
KRT40Q6A162 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC31.2■■■□□ 2.59
KRT40Q6A162 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC31.2■■■□□ 2.59
KRT40Q6A162 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT40Q6A162 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
KRT40Q6A162 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC31.18■■■□□ 2.58
KRT40Q6A162 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC31.18■■■□□ 2.58
KRT40Q6A162 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC31.18■■■□□ 2.58
KRT40Q6A162 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.18■■■□□ 2.58
KRT40Q6A162 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
KRT40Q6A162 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC31.17■■■□□ 2.58
KRT40Q6A162 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC31.17■■■□□ 2.58
KRT40Q6A162 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC31.16■■■□□ 2.58
KRT40Q6A162 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
KRT40Q6A162 AL161658.1-201ENST00000623641 1967 ntBASIC31.15■■■□□ 2.58
KRT40Q6A162 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC31.14■■■□□ 2.58
KRT40Q6A162 WASH5P-204ENST00000632292 975 ntBASIC31.14■■■□□ 2.58
KRT40Q6A162 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
KRT40Q6A162 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
KRT40Q6A162 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.11■■■□□ 2.57
KRT40Q6A162 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC31.11■■■□□ 2.57
KRT40Q6A162 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
KRT40Q6A162 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.09■■■□□ 2.57
KRT40Q6A162 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC31.09■■■□□ 2.57
KRT40Q6A162 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC31.08■■■□□ 2.57
KRT40Q6A162 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
KRT40Q6A162 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
KRT40Q6A162 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.06■■■□□ 2.56
KRT40Q6A162 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC31.05■■■□□ 2.56
KRT40Q6A162 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
KRT40Q6A162 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
KRT40Q6A162 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC31.03■■■□□ 2.56
KRT40Q6A162 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC31.03■■■□□ 2.56
KRT40Q6A162 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC31.02■■■□□ 2.56
KRT40Q6A162 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
KRT40Q6A162 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
KRT40Q6A162 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC31.01■■■□□ 2.55
KRT40Q6A162 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
KRT40Q6A162 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
KRT40Q6A162 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
KRT40Q6A162 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.99■■■□□ 2.55
KRT40Q6A162 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.99■■■□□ 2.55
KRT40Q6A162 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
KRT40Q6A162 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
KRT40Q6A162 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC30.98■■■□□ 2.55
KRT40Q6A162 ABCB10P1-201ENST00000614297 2181 ntBASIC30.97■■■□□ 2.55
KRT40Q6A162 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC30.97■■■□□ 2.55
KRT40Q6A162 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
KRT40Q6A162 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
KRT40Q6A162 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC30.92■■■□□ 2.54
KRT40Q6A162 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.92■■■□□ 2.54
KRT40Q6A162 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
KRT40Q6A162 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
KRT40Q6A162 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC30.91■■■□□ 2.54
KRT40Q6A162 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC30.91■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms