Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
SHROOM1Q2M3G4 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC32.23■■■□□ 2.75
SHROOM1Q2M3G4 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC32.23■■■□□ 2.75
SHROOM1Q2M3G4 DENR-202ENST00000455982 1052 ntTSL 5 BASIC32.21■■■□□ 2.75
SHROOM1Q2M3G4 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.21■■■□□ 2.75
SHROOM1Q2M3G4 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32.2■■■□□ 2.75
SHROOM1Q2M3G4 AC005559.1-201ENST00000589661 871 ntBASIC32.2■■■□□ 2.75
SHROOM1Q2M3G4 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM1Q2M3G4 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
SHROOM1Q2M3G4 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
SHROOM1Q2M3G4 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC32.15■■■□□ 2.74
SHROOM1Q2M3G4 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC32.15■■■□□ 2.74
SHROOM1Q2M3G4 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC32.15■■■□□ 2.74
SHROOM1Q2M3G4 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC32.15■■■□□ 2.74
SHROOM1Q2M3G4 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC32.13■■■□□ 2.73
SHROOM1Q2M3G4 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM1Q2M3G4 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC32.13■■■□□ 2.73
SHROOM1Q2M3G4 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM1Q2M3G4 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC32.12■■■□□ 2.73
SHROOM1Q2M3G4 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
SHROOM1Q2M3G4 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32.11■■■□□ 2.73
SHROOM1Q2M3G4 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC32.1■■■□□ 2.73
SHROOM1Q2M3G4 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC32.09■■■□□ 2.73
SHROOM1Q2M3G4 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.08■■■□□ 2.73
SHROOM1Q2M3G4 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM1Q2M3G4 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC32.08■■■□□ 2.73
SHROOM1Q2M3G4 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SHROOM1Q2M3G4 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.05■■■□□ 2.72
SHROOM1Q2M3G4 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
SHROOM1Q2M3G4 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.03■■■□□ 2.72
SHROOM1Q2M3G4 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
SHROOM1Q2M3G4 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.02■■■□□ 2.72
SHROOM1Q2M3G4 ABHD17AP4-201ENST00000411545 909 ntBASIC32.02■■■□□ 2.72
SHROOM1Q2M3G4 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC32.02■■■□□ 2.72
SHROOM1Q2M3G4 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32■■■□□ 2.71
SHROOM1Q2M3G4 AC044849.2-201ENST00000606596 710 ntBASIC32■■■□□ 2.71
SHROOM1Q2M3G4 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32■■■□□ 2.71
SHROOM1Q2M3G4 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM1Q2M3G4 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.99■■■□□ 2.71
SHROOM1Q2M3G4 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
SHROOM1Q2M3G4 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.97■■■□□ 2.71
SHROOM1Q2M3G4 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM1Q2M3G4 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.95■■■□□ 2.71
SHROOM1Q2M3G4 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.95■■■□□ 2.71
SHROOM1Q2M3G4 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM1Q2M3G4 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.94■■■□□ 2.7
SHROOM1Q2M3G4 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC31.94■■■□□ 2.7
SHROOM1Q2M3G4 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.93■■■□□ 2.7
SHROOM1Q2M3G4 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.92■■■□□ 2.7
SHROOM1Q2M3G4 MIR7108-201ENST00000614319 87 ntBASIC31.92■■■□□ 2.7
SHROOM1Q2M3G4 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM1Q2M3G4 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.91■■■□□ 2.7
SHROOM1Q2M3G4 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.91■■■□□ 2.7
SHROOM1Q2M3G4 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC31.91■■■□□ 2.7
SHROOM1Q2M3G4 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC31.9■■■□□ 2.7
SHROOM1Q2M3G4 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC31.89■■■□□ 2.69
SHROOM1Q2M3G4 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.87■■■□□ 2.69
SHROOM1Q2M3G4 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM1Q2M3G4 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.87■■■□□ 2.69
SHROOM1Q2M3G4 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.86■■■□□ 2.69
SHROOM1Q2M3G4 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.86■■■□□ 2.69
SHROOM1Q2M3G4 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.85■■■□□ 2.69
SHROOM1Q2M3G4 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.85■■■□□ 2.69
SHROOM1Q2M3G4 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.85■■■□□ 2.69
SHROOM1Q2M3G4 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.84■■■□□ 2.69
SHROOM1Q2M3G4 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
SHROOM1Q2M3G4 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.84■■■□□ 2.69
SHROOM1Q2M3G4 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.84■■■□□ 2.69
SHROOM1Q2M3G4 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.83■■■□□ 2.69
SHROOM1Q2M3G4 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM1Q2M3G4 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC31.82■■■□□ 2.68
SHROOM1Q2M3G4 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.81■■■□□ 2.68
SHROOM1Q2M3G4 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.8■■■□□ 2.68
SHROOM1Q2M3G4 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
SHROOM1Q2M3G4 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.8■■■□□ 2.68
SHROOM1Q2M3G4 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM1Q2M3G4 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM1Q2M3G4 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.79■■■□□ 2.68
SHROOM1Q2M3G4 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.79■■■□□ 2.68
SHROOM1Q2M3G4 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.78■■■□□ 2.68
SHROOM1Q2M3G4 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC31.78■■■□□ 2.68
SHROOM1Q2M3G4 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.77■■■□□ 2.68
SHROOM1Q2M3G4 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM1Q2M3G4 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.75■■■□□ 2.67
SHROOM1Q2M3G4 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SHROOM1Q2M3G4 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SHROOM1Q2M3G4 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.74■■■□□ 2.67
SHROOM1Q2M3G4 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.74■■■□□ 2.67
SHROOM1Q2M3G4 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM1Q2M3G4 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
SHROOM1Q2M3G4 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.72■■■□□ 2.67
SHROOM1Q2M3G4 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM1Q2M3G4 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
SHROOM1Q2M3G4 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.72■■■□□ 2.67
SHROOM1Q2M3G4 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SHROOM1Q2M3G4 ZNRF2P2-203ENST00000454624 420 ntBASIC31.71■■■□□ 2.67
SHROOM1Q2M3G4 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.71■■■□□ 2.67
SHROOM1Q2M3G4 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SHROOM1Q2M3G4 AC120057.4-201ENST00000624722 1615 ntBASIC31.7■■■□□ 2.66
SHROOM1Q2M3G4 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.69■■■□□ 2.66
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms