Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC33.3■■■□□ 2.92
COL1A1P02452 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC33.29■■■□□ 2.92
COL1A1P02452 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC33.28■■■□□ 2.92
COL1A1P02452 DUX4L28-201ENST00000623687 678 ntBASIC33.28■■■□□ 2.92
COL1A1P02452 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
COL1A1P02452 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
COL1A1P02452 AC087741.3-201ENST00000624270 1347 ntBASIC33.27■■■□□ 2.92
COL1A1P02452 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC33.26■■■□□ 2.91
COL1A1P02452 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC33.25■■■□□ 2.91
COL1A1P02452 MLEC-202ENST00000412616 841 ntTSL 3 BASIC33.25■■■□□ 2.91
COL1A1P02452 DENR-202ENST00000455982 1052 ntTSL 5 BASIC33.24■■■□□ 2.91
COL1A1P02452 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC33.23■■■□□ 2.91
COL1A1P02452 MIR762-201ENST00000390236 83 ntBASIC33.22■■■□□ 2.91
COL1A1P02452 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC33.22■■■□□ 2.91
COL1A1P02452 AC044849.2-201ENST00000606596 710 ntBASIC33.2■■■□□ 2.91
COL1A1P02452 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL1A1P02452 MIR7108-201ENST00000614319 87 ntBASIC33.19■■■□□ 2.9
COL1A1P02452 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC33.19■■■□□ 2.9
COL1A1P02452 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC33.18■■■□□ 2.9
COL1A1P02452 ABHD17AP4-201ENST00000411545 909 ntBASIC33.18■■■□□ 2.9
COL1A1P02452 CHML-205ENST00000638160 705 ntTSL 3 BASIC33.18■■■□□ 2.9
COL1A1P02452 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC33.17■■■□□ 2.9
COL1A1P02452 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL1A1P02452 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC33.15■■■□□ 2.9
COL1A1P02452 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC33.14■■■□□ 2.9
COL1A1P02452 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC33.14■■■□□ 2.9
COL1A1P02452 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC33.13■■■□□ 2.89
COL1A1P02452 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC33.13■■■□□ 2.89
COL1A1P02452 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC33.12■■■□□ 2.89
COL1A1P02452 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC33.12■■■□□ 2.89
COL1A1P02452 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC33.11■■■□□ 2.89
COL1A1P02452 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC33.11■■■□□ 2.89
COL1A1P02452 AC005559.1-201ENST00000589661 871 ntBASIC33.11■■■□□ 2.89
COL1A1P02452 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC33.08■■■□□ 2.89
COL1A1P02452 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC33.08■■■□□ 2.89
COL1A1P02452 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC33.07■■■□□ 2.88
COL1A1P02452 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC33.05■■■□□ 2.88
COL1A1P02452 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC33.05■■■□□ 2.88
COL1A1P02452 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC33.05■■■□□ 2.88
COL1A1P02452 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC33.05■■■□□ 2.88
COL1A1P02452 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC33.03■■■□□ 2.88
COL1A1P02452 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC33.03■■■□□ 2.88
COL1A1P02452 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC33.03■■■□□ 2.88
COL1A1P02452 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
COL1A1P02452 SIAH1-203ENST00000394725 2147 ntAPPRIS P3 TSL 1 (best) BASIC33.02■■■□□ 2.88
COL1A1P02452 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC33.02■■■□□ 2.88
COL1A1P02452 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC33.01■■■□□ 2.88
COL1A1P02452 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC33■■■□□ 2.87
COL1A1P02452 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC32.99■■■□□ 2.87
COL1A1P02452 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC32.98■■■□□ 2.87
COL1A1P02452 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.97■■■□□ 2.87
COL1A1P02452 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
COL1A1P02452 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
COL1A1P02452 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
COL1A1P02452 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.94■■■□□ 2.86
COL1A1P02452 PVT1-219ENST00000523427 938 ntTSL 3 BASIC32.94■■■□□ 2.86
COL1A1P02452 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC32.94■■■□□ 2.86
COL1A1P02452 AC120057.4-201ENST00000624722 1615 ntBASIC32.93■■■□□ 2.86
COL1A1P02452 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
COL1A1P02452 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC32.93■■■□□ 2.86
COL1A1P02452 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC32.93■■■□□ 2.86
COL1A1P02452 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
COL1A1P02452 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC32.92■■■□□ 2.86
COL1A1P02452 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC32.92■■■□□ 2.86
COL1A1P02452 HLA-V-202ENST00000446817 847 ntBASIC32.91■■■□□ 2.86
COL1A1P02452 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
COL1A1P02452 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
COL1A1P02452 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.89■■■□□ 2.86
COL1A1P02452 OLFM2-201ENST00000264833 2019 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
COL1A1P02452 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC32.88■■■□□ 2.85
COL1A1P02452 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
COL1A1P02452 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.86■■■□□ 2.85
COL1A1P02452 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC32.86■■■□□ 2.85
COL1A1P02452 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
COL1A1P02452 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.85■■■□□ 2.85
COL1A1P02452 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.85■■■□□ 2.85
COL1A1P02452 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC32.83■■■□□ 2.85
COL1A1P02452 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.83■■■□□ 2.85
COL1A1P02452 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC32.83■■■□□ 2.85
COL1A1P02452 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC32.82■■■□□ 2.85
COL1A1P02452 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC32.8■■■□□ 2.84
COL1A1P02452 BOD1-206ENST00000480951 814 ntTSL 2 BASIC32.8■■■□□ 2.84
COL1A1P02452 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC32.79■■■□□ 2.84
COL1A1P02452 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
COL1A1P02452 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.77■■■□□ 2.84
COL1A1P02452 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC32.76■■■□□ 2.84
COL1A1P02452 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC32.76■■■□□ 2.84
COL1A1P02452 RPS2-209ENST00000529806 993 ntTSL 3 BASIC32.76■■■□□ 2.84
COL1A1P02452 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC32.75■■■□□ 2.83
COL1A1P02452 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
COL1A1P02452 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC32.73■■■□□ 2.83
COL1A1P02452 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC32.73■■■□□ 2.83
COL1A1P02452 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
COL1A1P02452 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
COL1A1P02452 ZNRF2P2-203ENST00000454624 420 ntBASIC32.71■■■□□ 2.83
COL1A1P02452 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC32.71■■■□□ 2.83
COL1A1P02452 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
COL1A1P02452 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
COL1A1P02452 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC32.7■■■□□ 2.83
COL1A1P02452 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC32.7■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 203.5 ms