Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
ABCA1O95477 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC22.82■■□□□ 1.24
ABCA1O95477 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC22.82■■□□□ 1.24
ABCA1O95477 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
ABCA1O95477 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
ABCA1O95477 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
ABCA1O95477 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
ABCA1O95477 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
ABCA1O95477 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.8■■□□□ 1.24
ABCA1O95477 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.79■■□□□ 1.24
ABCA1O95477 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
ABCA1O95477 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
ABCA1O95477 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC22.79■■□□□ 1.24
ABCA1O95477 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
ABCA1O95477 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
ABCA1O95477 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
ABCA1O95477 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC22.78■■□□□ 1.24
ABCA1O95477 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC22.77■■□□□ 1.24
ABCA1O95477 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
ABCA1O95477 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
ABCA1O95477 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC22.76■■□□□ 1.23
ABCA1O95477 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.74■■□□□ 1.23
ABCA1O95477 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
ABCA1O95477 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC22.7■■□□□ 1.23
ABCA1O95477 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC22.7■■□□□ 1.23
ABCA1O95477 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
ABCA1O95477 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
ABCA1O95477 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
ABCA1O95477 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC22.7■■□□□ 1.22
ABCA1O95477 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
ABCA1O95477 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
ABCA1O95477 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
ABCA1O95477 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
ABCA1O95477 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
ABCA1O95477 MIR4449-201ENST00000578365 66 ntBASIC22.67■■□□□ 1.22
ABCA1O95477 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
ABCA1O95477 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
ABCA1O95477 ZNRF2P2-203ENST00000454624 420 ntBASIC22.66■■□□□ 1.22
ABCA1O95477 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
ABCA1O95477 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC22.65■■□□□ 1.22
ABCA1O95477 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC22.65■■□□□ 1.22
ABCA1O95477 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
ABCA1O95477 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
ABCA1O95477 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC22.63■■□□□ 1.21
ABCA1O95477 RPS2-209ENST00000529806 993 ntTSL 3 BASIC22.63■■□□□ 1.21
ABCA1O95477 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
ABCA1O95477 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
ABCA1O95477 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC22.62■■□□□ 1.21
ABCA1O95477 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC22.61■■□□□ 1.21
ABCA1O95477 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC22.61■■□□□ 1.21
ABCA1O95477 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC22.6■■□□□ 1.21
ABCA1O95477 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.6■■□□□ 1.21
ABCA1O95477 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC22.6■■□□□ 1.21
ABCA1O95477 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ABCA1O95477 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
ABCA1O95477 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.57■■□□□ 1.2
ABCA1O95477 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
ABCA1O95477 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC22.57■■□□□ 1.2
ABCA1O95477 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
ABCA1O95477 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC22.55■■□□□ 1.2
ABCA1O95477 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ABCA1O95477 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC22.55■■□□□ 1.2
ABCA1O95477 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
ABCA1O95477 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC22.53■■□□□ 1.2
ABCA1O95477 WASH5P-204ENST00000632292 975 ntBASIC22.52■■□□□ 1.2
ABCA1O95477 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
ABCA1O95477 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
ABCA1O95477 DUX4L29-201ENST00000425409 679 ntBASIC22.5■■□□□ 1.19
ABCA1O95477 CALM3-209ENST00000597743 577 ntTSL 4 BASIC22.5■■□□□ 1.19
ABCA1O95477 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
ABCA1O95477 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ABCA1O95477 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ABCA1O95477 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
ABCA1O95477 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
ABCA1O95477 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC22.49■■□□□ 1.19
ABCA1O95477 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
ABCA1O95477 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
ABCA1O95477 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.48■■□□□ 1.19
ABCA1O95477 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC22.48■■□□□ 1.19
ABCA1O95477 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC22.48■■□□□ 1.19
ABCA1O95477 MIR639-201ENST00000384974 98 ntBASIC22.48■■□□□ 1.19
ABCA1O95477 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC22.48■■□□□ 1.19
ABCA1O95477 MACF1-219ENST00000484793 834 ntTSL 2 BASIC22.47■■□□□ 1.19
ABCA1O95477 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
ABCA1O95477 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
ABCA1O95477 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC22.45■■□□□ 1.18
ABCA1O95477 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
ABCA1O95477 MIR3648-2-201ENST00000581792 180 ntBASIC22.45■■□□□ 1.18
ABCA1O95477 MIR3648-1-201ENST00000615959 180 ntBASIC22.45■■□□□ 1.18
ABCA1O95477 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
ABCA1O95477 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC22.43■■□□□ 1.18
ABCA1O95477 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
ABCA1O95477 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
ABCA1O95477 AC021231.2-201ENST00000594613 730 ntBASIC22.42■■□□□ 1.18
ABCA1O95477 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
ABCA1O95477 AGPS-202ENST00000409888 815 ntTSL 4 BASIC22.41■■□□□ 1.18
ABCA1O95477 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC22.41■■□□□ 1.18
ABCA1O95477 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
ABCA1O95477 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
ABCA1O95477 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 10.3 ms