Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC31.55■■■□□ 2.64
PRPF40AO75400 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC31.54■■■□□ 2.64
PRPF40AO75400 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
PRPF40AO75400 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC31.52■■■□□ 2.64
PRPF40AO75400 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.49■■■□□ 2.63
PRPF40AO75400 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC31.49■■■□□ 2.63
PRPF40AO75400 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
PRPF40AO75400 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
PRPF40AO75400 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC31.46■■■□□ 2.63
PRPF40AO75400 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC31.46■■■□□ 2.63
PRPF40AO75400 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
PRPF40AO75400 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
PRPF40AO75400 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
PRPF40AO75400 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.42■■■□□ 2.62
PRPF40AO75400 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
PRPF40AO75400 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC31.41■■■□□ 2.62
PRPF40AO75400 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
PRPF40AO75400 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC31.39■■■□□ 2.61
PRPF40AO75400 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC31.38■■■□□ 2.61
PRPF40AO75400 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.36■■■□□ 2.61
PRPF40AO75400 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC31.36■■■□□ 2.61
PRPF40AO75400 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
PRPF40AO75400 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC31.36■■■□□ 2.61
PRPF40AO75400 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
PRPF40AO75400 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC31.34■■■□□ 2.61
PRPF40AO75400 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
PRPF40AO75400 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PRPF40AO75400 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PRPF40AO75400 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC31.33■■■□□ 2.61
PRPF40AO75400 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
PRPF40AO75400 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC31.33■■■□□ 2.61
PRPF40AO75400 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC31.32■■■□□ 2.6
PRPF40AO75400 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PRPF40AO75400 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC31.32■■■□□ 2.6
PRPF40AO75400 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
PRPF40AO75400 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
PRPF40AO75400 MVK-208ENST00000539696 608 ntTSL 5 BASIC31.27■■■□□ 2.6
PRPF40AO75400 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
PRPF40AO75400 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC31.25■■■□□ 2.59
PRPF40AO75400 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
PRPF40AO75400 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.24■■■□□ 2.59
PRPF40AO75400 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
PRPF40AO75400 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC31.23■■■□□ 2.59
PRPF40AO75400 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
PRPF40AO75400 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC31.22■■■□□ 2.59
PRPF40AO75400 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC31.22■■■□□ 2.59
PRPF40AO75400 ST7-AS1-201ENST00000456775 1889 ntBASIC31.21■■■□□ 2.59
PRPF40AO75400 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
PRPF40AO75400 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
PRPF40AO75400 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PRPF40AO75400 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
PRPF40AO75400 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC31.18■■■□□ 2.58
PRPF40AO75400 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PRPF40AO75400 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
PRPF40AO75400 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
PRPF40AO75400 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.16■■■□□ 2.58
PRPF40AO75400 AC005524.1-203ENST00000586528 451 ntTSL 3 BASIC31.16■■■□□ 2.58
PRPF40AO75400 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
PRPF40AO75400 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
PRPF40AO75400 CHPT1-205ENST00000549872 2001 ntAPPRIS ALT2 TSL 5 BASIC31.15■■■□□ 2.58
PRPF40AO75400 MSANTD3-203ENST00000395067 1362 ntAPPRIS P1 TSL 1 (best) BASIC31.15■■■□□ 2.58
PRPF40AO75400 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC31.13■■■□□ 2.57
PRPF40AO75400 AP002365.1-201ENST00000603448 772 ntBASIC31.13■■■□□ 2.57
PRPF40AO75400 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
PRPF40AO75400 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.12■■■□□ 2.57
PRPF40AO75400 LINC01578-203ENST00000554669 578 ntTSL 5 BASIC31.1■■■□□ 2.57
PRPF40AO75400 AL161658.1-201ENST00000623641 1967 ntBASIC31.1■■■□□ 2.57
PRPF40AO75400 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.08■■■□□ 2.57
PRPF40AO75400 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC31.08■■■□□ 2.57
PRPF40AO75400 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC31.08■■■□□ 2.57
PRPF40AO75400 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
PRPF40AO75400 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.07■■■□□ 2.56
PRPF40AO75400 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRPF40AO75400 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC31.06■■■□□ 2.56
PRPF40AO75400 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC31.06■■■□□ 2.56
PRPF40AO75400 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
PRPF40AO75400 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC31.05■■■□□ 2.56
PRPF40AO75400 GSTZ1-201ENST00000216465 1338 ntAPPRIS P2 TSL 1 (best) BASIC31.04■■■□□ 2.56
PRPF40AO75400 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
PRPF40AO75400 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC31.01■■■□□ 2.56
PRPF40AO75400 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
PRPF40AO75400 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC31■■■□□ 2.55
PRPF40AO75400 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PRPF40AO75400 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC31■■■□□ 2.55
PRPF40AO75400 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC31■■■□□ 2.55
PRPF40AO75400 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
PRPF40AO75400 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.98■■■□□ 2.55
PRPF40AO75400 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.98■■■□□ 2.55
PRPF40AO75400 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC30.98■■■□□ 2.55
PRPF40AO75400 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC30.98■■■□□ 2.55
PRPF40AO75400 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
PRPF40AO75400 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
PRPF40AO75400 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC30.97■■■□□ 2.55
PRPF40AO75400 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
PRPF40AO75400 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC30.96■■■□□ 2.55
PRPF40AO75400 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC30.96■■■□□ 2.55
PRPF40AO75400 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.96■■■□□ 2.55
PRPF40AO75400 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC30.95■■■□□ 2.55
PRPF40AO75400 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
PRPF40AO75400 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
Retrieved 100 of 98,524 protein–RNA pairs in 7.6 ms