Protein–RNA interactions for Protein: A0A0B4J268

TRAV4, T-cell receptor alpha variable 4 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV4A0A0B4J268 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV4A0A0B4J268 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV4A0A0B4J268 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TRAV4A0A0B4J268 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
TRAV4A0A0B4J268 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.42■□□□□ 0.7
TRAV4A0A0B4J268 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV4A0A0B4J268 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TRAV4A0A0B4J268 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV4A0A0B4J268 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV4A0A0B4J268 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TRAV4A0A0B4J268 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC19.39■□□□□ 0.69
TRAV4A0A0B4J268 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TRAV4A0A0B4J268 AC139426.1-201ENST00000568218 2529 ntBASIC19.39■□□□□ 0.69
TRAV4A0A0B4J268 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
TRAV4A0A0B4J268 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC19.38■□□□□ 0.69
TRAV4A0A0B4J268 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC19.38■□□□□ 0.69
TRAV4A0A0B4J268 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV4A0A0B4J268 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV4A0A0B4J268 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV4A0A0B4J268 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC19.37■□□□□ 0.69
TRAV4A0A0B4J268 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
TRAV4A0A0B4J268 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV4A0A0B4J268 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC19.36■□□□□ 0.69
TRAV4A0A0B4J268 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
TRAV4A0A0B4J268 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV4A0A0B4J268 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
TRAV4A0A0B4J268 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV4A0A0B4J268 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
TRAV4A0A0B4J268 CDK2AP1-203ENST00000535979 1281 ntTSL 3 BASIC19.32■□□□□ 0.68
TRAV4A0A0B4J268 KLF16-203ENST00000592313 508 ntTSL 3 BASIC19.31■□□□□ 0.68
TRAV4A0A0B4J268 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC19.31■□□□□ 0.68
TRAV4A0A0B4J268 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
TRAV4A0A0B4J268 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
TRAV4A0A0B4J268 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV4A0A0B4J268 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
TRAV4A0A0B4J268 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC19.27■□□□□ 0.68
TRAV4A0A0B4J268 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV4A0A0B4J268 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV4A0A0B4J268 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV4A0A0B4J268 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
TRAV4A0A0B4J268 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
TRAV4A0A0B4J268 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.27■□□□□ 0.67
TRAV4A0A0B4J268 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV4A0A0B4J268 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
TRAV4A0A0B4J268 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC19.25■□□□□ 0.67
TRAV4A0A0B4J268 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
TRAV4A0A0B4J268 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
TRAV4A0A0B4J268 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC19.24■□□□□ 0.67
TRAV4A0A0B4J268 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
TRAV4A0A0B4J268 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC19.22■□□□□ 0.67
TRAV4A0A0B4J268 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC19.21■□□□□ 0.67
TRAV4A0A0B4J268 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV4A0A0B4J268 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
TRAV4A0A0B4J268 ADNP-AS1-201ENST00000558899 927 ntTSL 3 BASIC19.2■□□□□ 0.66
TRAV4A0A0B4J268 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
TRAV4A0A0B4J268 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC19.18■□□□□ 0.66
TRAV4A0A0B4J268 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
TRAV4A0A0B4J268 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV4A0A0B4J268 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
TRAV4A0A0B4J268 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.16■□□□□ 0.66
TRAV4A0A0B4J268 CBX4-202ENST00000448310 718 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
TRAV4A0A0B4J268 AL133380.1-201ENST00000506013 324 ntBASIC19.16■□□□□ 0.66
TRAV4A0A0B4J268 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV4A0A0B4J268 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
TRAV4A0A0B4J268 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV4A0A0B4J268 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.15■□□□□ 0.66
TRAV4A0A0B4J268 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
TRAV4A0A0B4J268 WASH5P-204ENST00000632292 975 ntBASIC19.14■□□□□ 0.65
TRAV4A0A0B4J268 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
TRAV4A0A0B4J268 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV4A0A0B4J268 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
TRAV4A0A0B4J268 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV4A0A0B4J268 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
TRAV4A0A0B4J268 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV4A0A0B4J268 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC19.12■□□□□ 0.65
TRAV4A0A0B4J268 RARRES2P7-201ENST00000567349 469 ntBASIC19.12■□□□□ 0.65
TRAV4A0A0B4J268 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
TRAV4A0A0B4J268 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC19.11■□□□□ 0.65
TRAV4A0A0B4J268 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV4A0A0B4J268 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
TRAV4A0A0B4J268 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
TRAV4A0A0B4J268 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC19.1■□□□□ 0.65
TRAV4A0A0B4J268 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
TRAV4A0A0B4J268 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
TRAV4A0A0B4J268 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
TRAV4A0A0B4J268 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC19.08■□□□□ 0.65
TRAV4A0A0B4J268 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV4A0A0B4J268 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV4A0A0B4J268 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV4A0A0B4J268 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV4A0A0B4J268 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV4A0A0B4J268 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
TRAV4A0A0B4J268 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
TRAV4A0A0B4J268 ABCB10P1-201ENST00000614297 2181 ntBASIC19.05■□□□□ 0.64
TRAV4A0A0B4J268 SETD8P1-201ENST00000623146 1180 ntBASIC19.05■□□□□ 0.64
TRAV4A0A0B4J268 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV4A0A0B4J268 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV4A0A0B4J268 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAV4A0A0B4J268 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV4A0A0B4J268 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms