Protein–RNA interactions for Protein: A0A0B4J266

TRAV41, T-cell receptor alpha variable 41 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV41A0A0B4J266 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAV41A0A0B4J266 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAV41A0A0B4J266 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 PDCD2-215ENST00000614056 1287 ntTSL 2 BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 WASH5P-204ENST00000632292 975 ntBASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
TRAV41A0A0B4J266 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
TRAV41A0A0B4J266 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
TRAV41A0A0B4J266 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
TRAV41A0A0B4J266 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.33■■□□□ 1
TRAV41A0A0B4J266 AL391121.1-201ENST00000607967 1349 ntBASIC21.32■■□□□ 1
TRAV41A0A0B4J266 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV41A0A0B4J266 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
TRAV41A0A0B4J266 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
TRAV41A0A0B4J266 CAHM-201ENST00000604200 896 ntBASIC21.31■■□□□ 1
TRAV41A0A0B4J266 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC21.3■■□□□ 1
TRAV41A0A0B4J266 EBPL-202ENST00000378268 680 ntTSL 3 BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
TRAV41A0A0B4J266 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC21.27■■□□□ 1
TRAV41A0A0B4J266 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV41A0A0B4J266 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRAV41A0A0B4J266 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC21.25■□□□□ 0.99
TRAV41A0A0B4J266 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRAV41A0A0B4J266 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV41A0A0B4J266 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV41A0A0B4J266 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRAV41A0A0B4J266 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRAV41A0A0B4J266 SUZ12P1-203ENST00000578195 985 ntBASIC21.22■□□□□ 0.99
TRAV41A0A0B4J266 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
TRAV41A0A0B4J266 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.21■□□□□ 0.99
TRAV41A0A0B4J266 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRAV41A0A0B4J266 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
TRAV41A0A0B4J266 CAPNS1-217ENST00000629983 799 ntTSL 5 BASIC21.19■□□□□ 0.98
TRAV41A0A0B4J266 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TRAV41A0A0B4J266 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV41A0A0B4J266 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
TRAV41A0A0B4J266 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV41A0A0B4J266 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TRAV41A0A0B4J266 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.15■□□□□ 0.98
TRAV41A0A0B4J266 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRAV41A0A0B4J266 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
TRAV41A0A0B4J266 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRAV41A0A0B4J266 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
TRAV41A0A0B4J266 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV41A0A0B4J266 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRAV41A0A0B4J266 DENR-202ENST00000455982 1052 ntTSL 5 BASIC21.12■□□□□ 0.97
TRAV41A0A0B4J266 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
TRAV41A0A0B4J266 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRAV41A0A0B4J266 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRAV41A0A0B4J266 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRAV41A0A0B4J266 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TRAV41A0A0B4J266 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
TRAV41A0A0B4J266 AL161658.1-201ENST00000623641 1967 ntBASIC21.08■□□□□ 0.96
TRAV41A0A0B4J266 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.08■□□□□ 0.96
TRAV41A0A0B4J266 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV41A0A0B4J266 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRAV41A0A0B4J266 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC21.07■□□□□ 0.96
TRAV41A0A0B4J266 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV41A0A0B4J266 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRAV41A0A0B4J266 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TRAV41A0A0B4J266 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 HNRNPLP2-201ENST00000568980 1570 ntBASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRAV41A0A0B4J266 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV41A0A0B4J266 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRAV41A0A0B4J266 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV41A0A0B4J266 MIR762-201ENST00000390236 83 ntBASIC21.03■□□□□ 0.96
TRAV41A0A0B4J266 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRAV41A0A0B4J266 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRAV41A0A0B4J266 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRAV41A0A0B4J266 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC21■□□□□ 0.95
TRAV41A0A0B4J266 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV41A0A0B4J266 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRAV41A0A0B4J266 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAV41A0A0B4J266 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms