Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RNF181-205ENST00000456023 559 ntTSL 317.12■□□□□ 0.332e-13■■■■□ 19.4
YBX3P16989 RNF181-201ENST00000306368 569 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.332e-13■■■■□ 19.4
YBX3P16989 RNF181-204ENST00000443647 535 ntTSL 212.94□□□□□ -0.342e-13■■■■□ 19.4
YBX3P16989 CUTA-208ENST00000482684 837 ntTSL 1 (best)25.43■■□□□ 1.662e-7■■■■□ 19.4
YBX3P16989 CUTA-209ENST00000487637 1378 ntTSL 212.01□□□□□ -0.492e-7■■■■□ 19.4
YBX3P16989 MYCBP-204ENST00000495043 819 ntTSL 227.22■■□□□ 1.955e-8■■■■□ 19.4
YBX3P16989 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.95□□□□□ -1.36e-9■■■■□ 19.4
YBX3P16989 ATXN10-210ENST00000493643 617 ntTSL 56.35□□□□□ -1.396e-9■■■■□ 19.4
YBX3P16989 NCOR2-214ENST00000453428 674 ntTSL 514.47□□□□□ -0.095e-7■■■■□ 19.4
YBX3P16989 SF3B1-210ENST00000482158 772 ntTSL 28.1□□□□□ -1.111e-17■■■■□ 19.4
YBX3P16989 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.012e-11■■■■□ 19.4
YBX3P16989 PNPO-215ENST00000641709 3232 nt14.67□□□□□ -0.066e-6■■■■□ 19.4
YBX3P16989 PNPO-217ENST00000642017 3465 ntAPPRIS P1 BASIC13.45□□□□□ -0.266e-6■■■■□ 19.4
YBX3P16989 AC018521.1-202ENST00000641877 2655 ntBASIC13.37□□□□□ -0.276e-6■■■■□ 19.4
YBX3P16989 AC018521.1-201ENST00000582262 575 ntTSL 413.1□□□□□ -0.316e-6■■■■□ 19.4
YBX3P16989 PNPO-211ENST00000641323 3657 nt11.89□□□□□ -0.516e-6■■■■□ 19.4
YBX3P16989 PNPO-207ENST00000584806 2940 ntTSL 37.99□□□□□ -1.136e-6■■■■□ 19.4
YBX3P16989 CTR9-204ENST00000529355 1146 ntTSL 27.68□□□□□ -1.182e-15■■■■□ 19.4
YBX3P16989 CTR9-203ENST00000526874 565 ntTSL 45.67□□□□□ -1.52e-15■■■■□ 19.4
YBX3P16989 TXNDC16-202ENST00000554399 504 ntTSL 422.95■■□□□ 1.266e-6■■■■□ 19.4
YBX3P16989 NECTIN2-205ENST00000591581 950 ntTSL 217.75■□□□□ 0.432e-11■■■■□ 19.4
YBX3P16989 CPNE3-205ENST00000522240 446 ntTSL 315.8■□□□□ 0.125e-6■■■■□ 19.4
YBX3P16989 CPNE3-210ENST00000621245 581 ntTSL 515.7■□□□□ 0.15e-6■■■■□ 19.4
YBX3P16989 CPNE3-212ENST00000621783 817 ntTSL 512.66□□□□□ -0.385e-6■■■■□ 19.4
YBX3P16989 TXNDC16-201ENST00000281741 4564 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.446e-6■■■■□ 19.4
YBX3P16989 CPNE3-209ENST00000620393 680 ntTSL 59.66□□□□□ -0.865e-6■■■■□ 19.4
YBX3P16989 CPNE3-206ENST00000523469 656 ntTSL 58.38□□□□□ -1.075e-6■■■■□ 19.4
YBX3P16989 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.335e-6■■■■□ 19.4
YBX3P16989 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.084e-7■■■■□ 19.4
YBX3P16989 UHRF1BP1-201ENST00000192788 9570 ntAPPRIS P2 TSL 1 (best) BASIC9.15□□□□□ -0.944e-7■■■■□ 19.4
YBX3P16989 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.043e-8■■■■□ 19.4
YBX3P16989 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.233e-8■■■■□ 19.4
YBX3P16989 RNF7-203ENST00000477012 1036 ntTSL 1 (best)22.39■■□□□ 1.173e-7■■■■□ 19.4
YBX3P16989 RNF7-204ENST00000477393 862 ntTSL 221.16■□□□□ 0.983e-7■■■■□ 19.4
YBX3P16989 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.713e-7■■■■□ 19.4
YBX3P16989 RNF7-205ENST00000480908 782 ntTSL 4 BASIC17.31■□□□□ 0.363e-7■■■■□ 19.4
YBX3P16989 RNF7-202ENST00000393000 805 ntTSL 2 BASIC16.82■□□□□ 0.283e-7■■■■□ 19.4
YBX3P16989 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC21.49■■□□□ 1.032e-15■■■■□ 19.4
YBX3P16989 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.335e-16■■■■□ 19.4
YBX3P16989 CYC1-204ENST00000533444 1832 ntTSL 1 (best)29.14■■■□□ 2.265e-16■■■■□ 19.4
YBX3P16989 WDR5-202ENST00000608739 577 ntTSL 421■□□□□ 0.952e-6■■■■□ 19.4
YBX3P16989 UGGT1-207ENST00000488439 928 ntTSL 519.97■□□□□ 0.793e-7■■■■□ 19.4
YBX3P16989 SORD-201ENST00000267814 4909 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.786e-7■■■■□ 19.4
YBX3P16989 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.179e-10■■■■□ 19.4
YBX3P16989 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.286e-7■■■■□ 19.3
YBX3P16989 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.99□□□□□ -0.016e-7■■■■□ 19.3
YBX3P16989 KLF11-206ENST00000540845 3885 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.526e-7■■■■□ 19.3
YBX3P16989 CDK12-205ENST00000559663 871 ntTSL 511.5□□□□□ -0.579e-17■■■■□ 19.3
YBX3P16989 LRP1-206ENST00000554118 418 ntTSL 210.8□□□□□ -0.684e-6■■■■□ 19.3
YBX3P16989 MBNL2-206ENST00000469707 2574 ntTSL 1 (best)8.17□□□□□ -1.13e-6■■■■□ 19.3
YBX3P16989 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC7.91□□□□□ -1.143e-6■■■■□ 19.3
YBX3P16989 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.61□□□□□ -1.353e-6■■■■□ 19.3
YBX3P16989 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.363e-6■■■■□ 19.3
YBX3P16989 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.73□□□□□ -1.493e-6■■■■□ 19.3
YBX3P16989 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC27.91■■■□□ 2.064e-7■■■■□ 19.3
YBX3P16989 RNF114-203ENST00000622999 2438 ntTSL 221.8■■□□□ 1.084e-7■■■■□ 19.3
YBX3P16989 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.644e-7■■■■□ 19.3
YBX3P16989 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.413e-10■■■■□ 19.3
YBX3P16989 GALE-207ENST00000459934 1563 ntTSL 520.83■□□□□ 0.923e-10■■■■□ 19.3
YBX3P16989 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.873e-10■■■■□ 19.3
YBX3P16989 GALE-206ENST00000456977 672 ntTSL 217.58■□□□□ 0.43e-10■■■■□ 19.3
YBX3P16989 GALE-214ENST00000481736 1801 ntTSL 212.48□□□□□ -0.413e-10■■■■□ 19.3
YBX3P16989 UFC1-206ENST00000483191 617 ntTSL 214.84□□□□□ -0.034e-7■■■■□ 19.3
YBX3P16989 UFC1-201ENST00000368003 1114 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.184e-7■■■■□ 19.3
YBX3P16989 DIAPH1-208ENST00000476339 2606 ntTSL 213.58□□□□□ -0.246e-9■■■■□ 19.3
YBX3P16989 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC27.24■■□□□ 1.953e-8■■■■□ 19.3
YBX3P16989 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC17.8■□□□□ 0.443e-8■■■■□ 19.3
YBX3P16989 OAZ2-205ENST00000559753 785 ntTSL 2 BASIC15.12■□□□□ 0.013e-8■■■■□ 19.3
YBX3P16989 UBA2-201ENST00000246548 4023 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.021e-7■■■■□ 19.3
YBX3P16989 UBA2-202ENST00000439527 2802 ntTSL 2 BASIC7.87□□□□□ -1.151e-7■■■■□ 19.3
YBX3P16989 SLC35E1-203ENST00000436553 1343 ntTSL 330.13■■■□□ 2.415e-9■■■■□ 19.3
YBX3P16989 SLC35E1-201ENST00000409648 3691 ntTSL 27.9□□□□□ -1.145e-9■■■■□ 19.3
YBX3P16989 IGF2BP1-201ENST00000290341 8274 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.263e-7■■■■□ 19.3
YBX3P16989 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC28.36■■■□□ 2.139e-7■■■■□ 19.3
YBX3P16989 TIMM50-216ENST00000601358 1481 ntTSL 1 (best)28.08■■■□□ 2.099e-7■■■■□ 19.3
YBX3P16989 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC27.02■■□□□ 1.929e-7■■■■□ 19.3
YBX3P16989 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.169e-7■■■■□ 19.3
YBX3P16989 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.649e-7■■■■□ 19.3
YBX3P16989 TIMM50-206ENST00000595961 2576 ntTSL 214.04□□□□□ -0.169e-7■■■■□ 19.3
YBX3P16989 SMC3-201ENST00000361804 4114 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.656e-7■■■■□ 19.3
YBX3P16989 ERBB3-219ENST00000551242 2755 ntTSL 1 (best)12.38□□□□□ -0.432e-6■■■□□ 19.2
YBX3P16989 ERBB3-201ENST00000267101 5919 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.562e-6■■■□□ 19.2
YBX3P16989 ERBB3-217ENST00000551085 4382 ntTSL 211.42□□□□□ -0.582e-6■■■□□ 19.2
YBX3P16989 ERBB3-203ENST00000415288 4353 ntTSL 2 BASIC9.19□□□□□ -0.942e-6■■■□□ 19.2
YBX3P16989 NUP188-201ENST00000372577 5689 ntAPPRIS P1 TSL 1 (best) BASIC10.75□□□□□ -0.698e-7■■■□□ 19.2
YBX3P16989 ATP5L-206ENST00000529790 900 ntTSL 27.75□□□□□ -1.175e-14■■■□□ 19.2
YBX3P16989 HIST1H3H-201ENST00000369163 1237 ntAPPRIS P1 BASIC16.41■□□□□ 0.223e-17■■■□□ 19.2
YBX3P16989 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC26.38■■□□□ 1.813e-18■■■□□ 19.2
YBX3P16989 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC25.72■■□□□ 1.713e-18■■■□□ 19.2
YBX3P16989 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC25.5■■□□□ 1.673e-18■■■□□ 19.2
YBX3P16989 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC22.91■■□□□ 1.263e-18■■■□□ 19.2
YBX3P16989 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC21.02■□□□□ 0.963e-18■■■□□ 19.2
YBX3P16989 TPD52L1-202ENST00000368388 2147 ntTSL 1 (best) BASIC20.35■□□□□ 0.853e-18■■■□□ 19.2
YBX3P16989 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.79■□□□□ 0.63e-18■■■□□ 19.2
YBX3P16989 TPD52L1-210ENST00000532423 507 ntTSL 218.35■□□□□ 0.533e-18■■■□□ 19.2
YBX3P16989 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.493e-18■■■□□ 19.2
YBX3P16989 TPD52L1-206ENST00000524679 915 ntTSL 2 BASIC15.9■□□□□ 0.143e-18■■■□□ 19.2
YBX3P16989 TPD52L1-204ENST00000392482 1165 ntTSL 2 BASIC15.09■□□□□ 0.013e-18■■■□□ 19.2
YBX3P16989 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.522e-6■■■□□ 19.2
YBX3P16989 NIPAL3-202ENST00000339255 1676 ntTSL 5 BASIC17.42■□□□□ 0.382e-6■■■□□ 19.2
Retrieved 100 of 29,075 protein–RNA pairs in 547.4 ms