RNA–Protein interactions for RNA: ENST00000523469.5

CPNE3-206, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 656 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-206ENST00000523469 AEBP2Q6ZN18 517 aaPredicted RBP30.53■■■□□ 2.48
CPNE3-206ENST00000523469 CHIC1Q5VXU3 224 aa30.03■■■□□ 2.4
CPNE3-206ENST00000523469 PHF23Q9BUL5 403 aaPredicted RBP26.4■■□□□ 1.82
CPNE3-206ENST00000523469 SENP3Q9H4L4 574 aaPredicted RBP25.93■■□□□ 1.74
CPNE3-206ENST00000523469 PLPPR3Q6T4P5 718 aa24.48■■□□□ 1.51
CPNE3-206ENST00000523469 FOXD1Q16676 465 aa24■■□□□ 1.43
CPNE3-206ENST00000523469 PPP6R1Q9UPN7 881 aa23.23■■□□□ 1.31
CPNE3-206ENST00000523469 ADRA2BP18089 450 aa23.22■■□□□ 1.31
CPNE3-206ENST00000523469 PIAS4Q8N2W9 510 aaPredicted RBP22.69■■□□□ 1.22
CPNE3-206ENST00000523469 MSH5O43196 834 aa22.12■■□□□ 1.13
CPNE3-206ENST00000523469 PPP4R3CPQ6ZMV5 832 aa21.57■■□□□ 1.04
CPNE3-206ENST00000523469 SCAF1Q9H7N4 1312 aaKnown RBP21.3■■□□□ 1
CPNE3-206ENST00000523469 KCNA4P22459 653 aa21.25■□□□□ 0.99
CPNE3-206ENST00000523469 NCBP3Q53F19 620 aaKnown RBP21.1■□□□□ 0.97
CPNE3-206ENST00000523469 MAPK8IP2Q13387 824 aaPredicted RBP21■□□□□ 0.95
CPNE3-206ENST00000523469 CNKSR2Q8WXI2 1034 aa20.95■□□□□ 0.94
CPNE3-206ENST00000523469 NPM3O75607 178 aaKnown RBP20.74■□□□□ 0.91
CPNE3-206ENST00000523469 DMRT2Q9Y5R5 561 aa20.72■□□□□ 0.91
CPNE3-206ENST00000523469 RNF216Q9NWF9 866 aaPredicted RBP20.5■□□□□ 0.87
CPNE3-206ENST00000523469 HOXD11P31277 338 aaPredicted RBP20.37■□□□□ 0.85
CPNE3-206ENST00000523469 SLC4A1APQ9BWU0 796 aaKnown RBP20.29■□□□□ 0.84
CPNE3-206ENST00000523469 POTEDQ86YR6 584 aa20.21■□□□□ 0.83
CPNE3-206ENST00000523469 DNAJC5BQ9UF47 199 aa20.17■□□□□ 0.82
CPNE3-206ENST00000523469 EHMT2Q96KQ7 1210 aa19.89■□□□□ 0.77
CPNE3-206ENST00000523469 DCAF8L1A6NGE4 600 aa19.79■□□□□ 0.76
CPNE3-206ENST00000523469 CSRNP3Q8WYN3 585 aa19.59■□□□□ 0.73
CPNE3-206ENST00000523469 ZBTB22O15209 634 aa19.55■□□□□ 0.72
CPNE3-206ENST00000523469 FOXD4L1Q9NU39 408 aa19.55■□□□□ 0.72
CPNE3-206ENST00000523469 SLC4A2P04920 1241 aa19.54■□□□□ 0.72
CPNE3-206ENST00000523469 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.41■□□□□ 0.7
CPNE3-206ENST00000523469 MYCNP04198 464 aaPredicted RBP19.19■□□□□ 0.66
CPNE3-206ENST00000523469 U3KPZ7 1027 aaPredicted RBP19.09■□□□□ 0.65
CPNE3-206ENST00000523469 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.97■□□□□ 0.63
CPNE3-206ENST00000523469 HNRNPUL2Q1KMD3 747 aaKnown RBP18.97■□□□□ 0.63
CPNE3-206ENST00000523469 RNF39Q9H2S5 420 aa18.95■□□□□ 0.62
CPNE3-206ENST00000523469 SAMD1Q6SPF0 538 aaPredicted RBP18.91■□□□□ 0.62
CPNE3-206ENST00000523469 ATXN8OSP0DMR3 200 aa18.87■□□□□ 0.61
CPNE3-206ENST00000523469 C1QBPQ07021 282 aaKnown RBP18.76■□□□□ 0.59
CPNE3-206ENST00000523469 APLP2Q06481 763 aa18.74■□□□□ 0.59
CPNE3-206ENST00000523469 ATF5Q9Y2D1 282 aaPredicted RBP18.61■□□□□ 0.57
CPNE3-206ENST00000523469 SPINK5Q9NQ38 1064 aaPredicted RBP18.49■□□□□ 0.55
CPNE3-206ENST00000523469 CAPN15O75808 1086 aa18.43■□□□□ 0.54
CPNE3-206ENST00000523469 ZNF219Q9P2Y4 722 aaPredicted RBP18.43■□□□□ 0.54
CPNE3-206ENST00000523469 TRHP20396 242 aaPredicted RBP18.38■□□□□ 0.53
CPNE3-206ENST00000523469 CACNB1Q02641 598 aaPredicted RBP18.32■□□□□ 0.52
CPNE3-206ENST00000523469 POLA2Q14181 598 aa18.13■□□□□ 0.49
CPNE3-206ENST00000523469 DSG3P32926 999 aa18.08■□□□□ 0.48
CPNE3-206ENST00000523469 ABCB7O75027 752 aa18.07■□□□□ 0.48
CPNE3-206ENST00000523469 ZBTB12Q9Y330 459 aaPredicted RBP17.9■□□□□ 0.46
CPNE3-206ENST00000523469 FBLN2P98095 1184 aa17.88■□□□□ 0.45
CPNE3-206ENST00000523469 MKRN4PQ13434 485 aaPredicted RBP17.82■□□□□ 0.44
CPNE3-206ENST00000523469 FKBP8Q14318 412 aa17.71■□□□□ 0.43
CPNE3-206ENST00000523469 SPDYE4A6NLX3 237 aa17.54■□□□□ 0.4
CPNE3-206ENST00000523469 OSCARQ8IYS5 282 aa17.5■□□□□ 0.39
CPNE3-206ENST00000523469 SPDYE2BA6NHP3 402 aa17.41■□□□□ 0.38
CPNE3-206ENST00000523469 SPDYE6P0CI01 402 aa17.41■□□□□ 0.38
CPNE3-206ENST00000523469 SPDYE2Q495Y8 402 aa17.41■□□□□ 0.38
CPNE3-206ENST00000523469 ZNF692Q9BU19 519 aaPredicted RBP17.35■□□□□ 0.37
CPNE3-206ENST00000523469 PROM2Q8N271 834 aa17.28■□□□□ 0.36
CPNE3-206ENST00000523469 SSUH2Q9Y2M2 353 aa17.28■□□□□ 0.36
CPNE3-206ENST00000523469 RBM42Q9BTD8 480 aaKnown RBP17.27■□□□□ 0.36
CPNE3-206ENST00000523469 PABPN1Q86U42 306 aaKnown RBP eCLIP17.12■□□□□ 0.33
CPNE3-206ENST00000523469 AKT1S1Q96B36 256 aa17.09■□□□□ 0.33
CPNE3-206ENST00000523469 FBXO3Q9UK99 471 aa17.08■□□□□ 0.32
CPNE3-206ENST00000523469 STAG3Q9UJ98 1225 aa16.92■□□□□ 0.3
CPNE3-206ENST00000523469 REM2Q8IYK8 340 aaPredicted RBP16.89■□□□□ 0.29
CPNE3-206ENST00000523469 SPDYE1Q8NFV5 336 aaPredicted RBP16.85■□□□□ 0.29
CPNE3-206ENST00000523469 VASPP50552 380 aaPredicted RBP16.81■□□□□ 0.28
CPNE3-206ENST00000523469 CLEC11AQ9Y240 323 aa16.73■□□□□ 0.27
CPNE3-206ENST00000523469 PITPNM1O00562 1244 aa16.69■□□□□ 0.26
CPNE3-206ENST00000523469 PRR29P0C7W0 189 aa16.64■□□□□ 0.25
CPNE3-206ENST00000523469 PLCD3Q8N3E9 789 aa16.62■□□□□ 0.25
CPNE3-206ENST00000523469 MIER1Q8N108 512 aa16.61■□□□□ 0.25
CPNE3-206ENST00000523469 IFNLR1Q8IU57 520 aaPredicted RBP16.58■□□□□ 0.24
CPNE3-206ENST00000523469 PLEKHG5O94827 1062 aa16.56■□□□□ 0.24
CPNE3-206ENST00000523469 KLHL34Q8N239 644 aa16.49■□□□□ 0.23
CPNE3-206ENST00000523469 AMER1Q5JTC6 1135 aaPredicted RBP16.48■□□□□ 0.23
CPNE3-206ENST00000523469 ZBTB47Q9UFB7 747 aaPredicted RBP16.46■□□□□ 0.23
CPNE3-206ENST00000523469 CHRDL2Q6WN34 429 aa16.45■□□□□ 0.22
CPNE3-206ENST00000523469 CREBZFQ9NS37 354 aa16.44■□□□□ 0.22
CPNE3-206ENST00000523469 SPOCK2Q92563 424 aa16.38■□□□□ 0.21
CPNE3-206ENST00000523469 RTN4Q9NQC3 1192 aaKnown RBP16.38■□□□□ 0.21
CPNE3-206ENST00000523469 FXR2P51116 673 aaKnown RBP eCLIP16.36■□□□□ 0.21
CPNE3-206ENST00000523469 MNX1P50219 401 aaPredicted RBP16.29■□□□□ 0.2
CPNE3-206ENST00000523469 CHADLQ6NUI6 762 aa16.29■□□□□ 0.2
CPNE3-206ENST00000523469 PRKAR2AP13861 404 aaKnown RBP16.28■□□□□ 0.2
CPNE3-206ENST00000523469 PIP4P2Q8N4L2 257 aa16.28■□□□□ 0.2
CPNE3-206ENST00000523469 NPM1P06748 294 aaKnown RBP eCLIP16.21■□□□□ 0.19
CPNE3-206ENST00000523469 FARP1Q9Y4F1 1045 aaPredicted RBP16.19■□□□□ 0.18
CPNE3-206ENST00000523469 NUBP1P53384 320 aa16.16■□□□□ 0.18
CPNE3-206ENST00000523469 PKD2Q13563 968 aa16.09■□□□□ 0.17
CPNE3-206ENST00000523469 CIZ1Q9ULV3 898 aaPredicted RBP16.07■□□□□ 0.16
CPNE3-206ENST00000523469 GSE1Q14687 1217 aa16.06■□□□□ 0.16
CPNE3-206ENST00000523469 FAM212AQ96EL1 285 aa16.06■□□□□ 0.16
CPNE3-206ENST00000523469 RASEFQ8IZ41 740 aa16.04■□□□□ 0.16
CPNE3-206ENST00000523469 DCAF8Q5TAQ9 597 aa16.03■□□□□ 0.16
CPNE3-206ENST00000523469 TRIM41Q8WV44 630 aa15.98■□□□□ 0.15
CPNE3-206ENST00000523469 ECM2O94769 699 aaPredicted RBP15.97■□□□□ 0.15
CPNE3-206ENST00000523469 TSPYL2Q9H2G4 693 aaPredicted RBP15.91■□□□□ 0.14
CPNE3-206ENST00000523469 PAK3O75914 559 aaPredicted RBP15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 893 ms