RNA–Protein interactions for RNA: ENST00000372577.2

NUP188-201, Transcript of nucleoporin 188, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP188, Length 5,689 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-201ENST00000372577 NISCHQ9Y2I1 1504 aa18.61■□□□□ 0.57
NUP188-201ENST00000372577 DCAF8L2P0C7V8 631 aa18.13■□□□□ 0.49
NUP188-201ENST00000372577 SUPT5HO00267 1087 aaKnown RBP17.36■□□□□ 0.37
NUP188-201ENST00000372577 SHROOM4Q9ULL8 1493 aa17.18■□□□□ 0.34
NUP188-201ENST00000372577 APLP2Q06481 763 aa16.45■□□□□ 0.22
NUP188-201ENST00000372577 EHMT2Q96KQ7 1210 aa16.38■□□□□ 0.21
NUP188-201ENST00000372577 TRIM41Q8WV44 630 aa16.27■□□□□ 0.19
NUP188-201ENST00000372577 FAM9AQ8IZU1 332 aaPredicted RBP16.25■□□□□ 0.19
NUP188-201ENST00000372577 PELP1Q8IZL8 1130 aaKnown RBP16.16■□□□□ 0.18
NUP188-201ENST00000372577 ZEB1P37275 1124 aaPredicted RBP16.14■□□□□ 0.18
NUP188-201ENST00000372577 PCGF6Q9BYE7 350 aa16.12■□□□□ 0.17
NUP188-201ENST00000372577 UBTFP17480 764 aaKnown RBP15.93■□□□□ 0.14
NUP188-201ENST00000372577 TTBK1Q5TCY1 1321 aaPredicted RBP15.86■□□□□ 0.13
NUP188-201ENST00000372577 CCER1Q8TC90 406 aaPredicted RBP15.86■□□□□ 0.13
NUP188-201ENST00000372577 RANGAP1P46060 587 aaPredicted RBP15.79■□□□□ 0.12
NUP188-201ENST00000372577 CENPBP07199 599 aaPredicted RBP15.78■□□□□ 0.12
NUP188-201ENST00000372577 CHIC1Q5VXU3 224 aa15.77■□□□□ 0.12
NUP188-201ENST00000372577 TRIM26Q12899 539 aaPredicted RBP15.76■□□□□ 0.11
NUP188-201ENST00000372577 ATP1B4Q9UN42 357 aaPredicted RBP15.71■□□□□ 0.11
NUP188-201ENST00000372577 ABCC9O60706 1549 aa15.62■□□□□ 0.09
NUP188-201ENST00000372577 CCDC180Q9P1Z9 1646 aa15.52■□□□□ 0.08
NUP188-201ENST00000372577 HRCP23327 699 aa15.52■□□□□ 0.07
NUP188-201ENST00000372577 LOC105371045A0A1W2PR82 267 aa15.49■□□□□ 0.07
NUP188-201ENST00000372577 ZCCHC6Q5VYS8 1495 aaKnown RBP15.48■□□□□ 0.07
NUP188-201ENST00000372577 PPARGC1BQ86YN6 1023 aaKnown RBP15.42■□□□□ 0.06
NUP188-201ENST00000372577 NEFLP07196 543 aa15.36■□□□□ 0.05
NUP188-201ENST00000372577 PABPN1Q86U42 306 aaKnown RBP eCLIP15.32■□□□□ 0.04
NUP188-201ENST00000372577 ERICH6Q7L0X2 663 aa15.26■□□□□ 0.03
NUP188-201ENST00000372577 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.23■□□□□ 0.03
NUP188-201ENST00000372577 HNRNPUL2Q1KMD3 747 aaKnown RBP15.23■□□□□ 0.03
NUP188-201ENST00000372577 ITGAEP38570 1179 aa15.22■□□□□ 0.03
NUP188-201ENST00000372577 YTHDC1Q96MU7 727 aaKnown RBP15.21■□□□□ 0.02
NUP188-201ENST00000372577 SCRIBQ14160 1630 aa15.18■□□□□ 0.02
NUP188-201ENST00000372577 MYT1Q01538 1121 aa15.07■□□□□ 0
NUP188-201ENST00000372577 CSRNP3Q8WYN3 585 aa15.07■□□□□ 0
NUP188-201ENST00000372577 MYT1LQ9UL68 1186 aa15.04■□□□□ -0
NUP188-201ENST00000372577 FAM50AQ14320 339 aaKnown RBP15.02□□□□□ -0.01
NUP188-201ENST00000372577 RB1CC1Q8TDY2 1594 aa15□□□□□ -0.01
NUP188-201ENST00000372577 DIEXFQ68CQ4 756 aaKnown RBP14.99□□□□□ -0.01
NUP188-201ENST00000372577 DCAF1Q9Y4B6 1507 aa14.97□□□□□ -0.01
NUP188-201ENST00000372577 NACADO15069 1562 aa14.96□□□□□ -0.01
NUP188-201ENST00000372577 POLR3GLQ9BT43 218 aa14.92□□□□□ -0.02
NUP188-201ENST00000372577 TRIM52Q96A61 297 aa14.88□□□□□ -0.03
NUP188-201ENST00000372577 RSF1Q96T23 1441 aaPredicted RBP14.81□□□□□ -0.04
NUP188-201ENST00000372577 ZNF316A6NFI3 1004 aaPredicted RBP14.79□□□□□ -0.04
NUP188-201ENST00000372577 EEA1Q15075 1411 aa14.79□□□□□ -0.04
NUP188-201ENST00000372577 NEUROD1Q13562 356 aa14.78□□□□□ -0.04
NUP188-201ENST00000372577 CDK11AQ9UQ88 783 aaPredicted RBP14.77□□□□□ -0.05
NUP188-201ENST00000372577 DAXXQ9UER7 740 aaPredicted RBP14.75□□□□□ -0.05
NUP188-201ENST00000372577 ANP32CO43423 234 aa14.74□□□□□ -0.05
NUP188-201ENST00000372577 FBLN2P98095 1184 aa14.73□□□□□ -0.05
NUP188-201ENST00000372577 P3H3Q8IVL6 736 aa14.68□□□□□ -0.06
NUP188-201ENST00000372577 BAZ1AQ9NRL2 1556 aaPredicted RBP14.66□□□□□ -0.06
NUP188-201ENST00000372577 CNGB1Q14028 1251 aaPredicted RBP14.63□□□□□ -0.07
NUP188-201ENST00000372577 SLC4A1APQ9BWU0 796 aaKnown RBP14.63□□□□□ -0.07
NUP188-201ENST00000372577 GOLGA3Q08378 1498 aa14.62□□□□□ -0.07
NUP188-201ENST00000372577 BAZ1BQ9UIG0 1483 aaKnown RBP14.61□□□□□ -0.07
NUP188-201ENST00000372577 CLIP1P30622 1438 aa14.6□□□□□ -0.07
NUP188-201ENST00000372577 WRNQ14191 1432 aaPredicted RBP eCLIP14.58□□□□□ -0.08
NUP188-201ENST00000372577 ZNF326Q5BKZ1 582 aaKnown RBP14.57□□□□□ -0.08
NUP188-201ENST00000372577 CLSPNQ9HAW4 1339 aa14.55□□□□□ -0.08
NUP188-201ENST00000372577 TONSLQ96HA7 1378 aa14.54□□□□□ -0.08
NUP188-201ENST00000372577 MYO15BQ96JP2 1530 aa14.53□□□□□ -0.08
NUP188-201ENST00000372577 GTF3C3Q9Y5Q9 886 aa14.52□□□□□ -0.08
NUP188-201ENST00000372577 ACIN1Q9UKV3 1341 aaKnown RBP14.52□□□□□ -0.09
NUP188-201ENST00000372577 CEP164Q9UPV0 1460 aa14.51□□□□□ -0.09
NUP188-201ENST00000372577 CEP162Q5TB80 1403 aa14.51□□□□□ -0.09
NUP188-201ENST00000372577 TNIKQ9UKE5 1360 aa14.51□□□□□ -0.09
NUP188-201ENST00000372577 ZNF777Q9ULD5 760 aaPredicted RBP14.5□□□□□ -0.09
NUP188-201ENST00000372577 KIF27Q86VH2 1401 aa14.49□□□□□ -0.09
NUP188-201ENST00000372577 ARID3CA6NKF2 412 aa14.48□□□□□ -0.09
NUP188-201ENST00000372577 MTUS2Q5JR59 1369 aa14.47□□□□□ -0.09
NUP188-201ENST00000372577 RTL5Q5HYW3 569 aaPredicted RBP14.43□□□□□ -0.1
NUP188-201ENST00000372577 CECR2Q9BXF3 1484 aa14.42□□□□□ -0.1
NUP188-201ENST00000372577 CHMP7Q8WUX9 453 aaPredicted RBP14.37□□□□□ -0.11
NUP188-201ENST00000372577 NPM1P06748 294 aaKnown RBP eCLIP14.37□□□□□ -0.11
NUP188-201ENST00000372577 NEFMP07197 916 aa14.37□□□□□ -0.11
NUP188-201ENST00000372577 TSPY4P0CV99 314 aa14.36□□□□□ -0.11
NUP188-201ENST00000372577 TSPY10P0CW01 314 aa14.36□□□□□ -0.11
NUP188-201ENST00000372577 SMARCA2P51531 1590 aa14.34□□□□□ -0.11
NUP188-201ENST00000372577 BCANQ96GW7 911 aa14.33□□□□□ -0.11
NUP188-201ENST00000372577 MROH2BQ7Z745 1585 aa14.32□□□□□ -0.12
NUP188-201ENST00000372577 ZBTB47Q9UFB7 747 aaPredicted RBP14.31□□□□□ -0.12
NUP188-201ENST00000372577 CANXP27824 592 aaKnown RBP14.29□□□□□ -0.12
NUP188-201ENST00000372577 CHIC2Q9UKJ5 165 aa14.29□□□□□ -0.12
NUP188-201ENST00000372577 FHAD1B1AJZ9 1412 aa14.28□□□□□ -0.12
NUP188-201ENST00000372577 DDX10Q13206 875 aaKnown RBP14.27□□□□□ -0.13
NUP188-201ENST00000372577 CCDC88BA6NC98 1476 aa14.27□□□□□ -0.13
NUP188-201ENST00000372577 ESF1Q9H501 851 aaKnown RBP14.26□□□□□ -0.13
NUP188-201ENST00000372577 TOP2AP11388 1531 aaKnown RBP14.26□□□□□ -0.13
NUP188-201ENST00000372577 PLEKHD1A6NEE1 506 aa14.23□□□□□ -0.13
NUP188-201ENST00000372577 HNRNPUQ00839 825 aaKnown RBP eCLIP14.21□□□□□ -0.14
NUP188-201ENST00000372577 EIF4G2P78344 907 aaKnown RBP eCLIP14.2□□□□□ -0.147e-7■■■■■ 46.9
NUP188-201ENST00000372577 CARMIL1Q5VZK9 1371 aa14.19□□□□□ -0.14
NUP188-201ENST00000372577 SOGA1O94964 1423 aa14.18□□□□□ -0.14
NUP188-201ENST00000372577 CUX2O14529 1486 aa14.18□□□□□ -0.14
NUP188-201ENST00000372577 STAG3Q9UJ98 1225 aa14.18□□□□□ -0.14
NUP188-201ENST00000372577 ANP32AP39687 249 aaKnown RBP14.17□□□□□ -0.14
NUP188-201ENST00000372577 CHGAP10645 457 aaKnown RBP14.17□□□□□ -0.14
NUP188-201ENST00000372577 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.141e-6■■■■□ 21.9
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms