RNA–Protein interactions for RNA: ENST00000517490.5

CPNE3-203, Transcript of copine 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPNE3, Length 4,865 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-203ENST00000517490 NISCHQ9Y2I1 1504 aa12.09□□□□□ -0.47
CPNE3-203ENST00000517490 SUPT5HO00267 1087 aaKnown RBP11.06□□□□□ -0.64
CPNE3-203ENST00000517490 SHROOM4Q9ULL8 1493 aa10.97□□□□□ -0.65
CPNE3-203ENST00000517490 DCAF8L2P0C7V8 631 aa10.87□□□□□ -0.67
CPNE3-203ENST00000517490 PCGF6Q9BYE7 350 aa10.73□□□□□ -0.69
CPNE3-203ENST00000517490 HRCP23327 699 aa10.72□□□□□ -0.69
CPNE3-203ENST00000517490 PELP1Q8IZL8 1130 aaKnown RBP10.6□□□□□ -0.71
CPNE3-203ENST00000517490 ZEB1P37275 1124 aaPredicted RBP10.55□□□□□ -0.72
CPNE3-203ENST00000517490 CCDC180Q9P1Z9 1646 aa10.53□□□□□ -0.72
CPNE3-203ENST00000517490 EHMT2Q96KQ7 1210 aa10.53□□□□□ -0.72
CPNE3-203ENST00000517490 CHIC1Q5VXU3 224 aa10.52□□□□□ -0.73
CPNE3-203ENST00000517490 SLC24A1O60721 1099 aa10.46□□□□□ -0.74
CPNE3-203ENST00000517490 TRIM26Q12899 539 aaPredicted RBP10.43□□□□□ -0.74
CPNE3-203ENST00000517490 PPARGC1BQ86YN6 1023 aaKnown RBP10.38□□□□□ -0.75
CPNE3-203ENST00000517490 MYT1Q01538 1121 aa10.32□□□□□ -0.76
CPNE3-203ENST00000517490 CENPBP07199 599 aaPredicted RBP10.29□□□□□ -0.76
CPNE3-203ENST00000517490 TRIM41Q8WV44 630 aa10.29□□□□□ -0.76
CPNE3-203ENST00000517490 LOC105371045A0A1W2PR82 267 aa10.29□□□□□ -0.76
CPNE3-203ENST00000517490 FAM9AQ8IZU1 332 aaPredicted RBP10.28□□□□□ -0.76
CPNE3-203ENST00000517490 DCAF1Q9Y4B6 1507 aa10.23□□□□□ -0.77
CPNE3-203ENST00000517490 CCER1Q8TC90 406 aaPredicted RBP10.21□□□□□ -0.78
CPNE3-203ENST00000517490 ZCCHC6Q5VYS8 1495 aaKnown RBP10.2□□□□□ -0.78
CPNE3-203ENST00000517490 MYO15BQ96JP2 1530 aa10.15□□□□□ -0.78
CPNE3-203ENST00000517490 APLP2Q06481 763 aa10.02□□□□□ -0.81
CPNE3-203ENST00000517490 TTBK1Q5TCY1 1321 aaPredicted RBP10.02□□□□□ -0.81
CPNE3-203ENST00000517490 DIEXFQ68CQ4 756 aaKnown RBP9.98□□□□□ -0.81
CPNE3-203ENST00000517490 ACIN1Q9UKV3 1341 aaKnown RBP9.97□□□□□ -0.81
CPNE3-203ENST00000517490 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.95□□□□□ -0.82
CPNE3-203ENST00000517490 YTHDC1Q96MU7 727 aaKnown RBP9.95□□□□□ -0.82
CPNE3-203ENST00000517490 SCAF1Q9H7N4 1312 aaKnown RBP9.93□□□□□ -0.82
CPNE3-203ENST00000517490 GTF3C3Q9Y5Q9 886 aa9.92□□□□□ -0.82
CPNE3-203ENST00000517490 UBTFP17480 764 aaKnown RBP9.91□□□□□ -0.82
CPNE3-203ENST00000517490 NACADO15069 1562 aa9.89□□□□□ -0.83
CPNE3-203ENST00000517490 RB1CC1Q8TDY2 1594 aa9.84□□□□□ -0.83
CPNE3-203ENST00000517490 ZNF316A6NFI3 1004 aaPredicted RBP9.81□□□□□ -0.84
CPNE3-203ENST00000517490 NEUROD1Q13562 356 aa9.8□□□□□ -0.84
CPNE3-203ENST00000517490 RANGAP1P46060 587 aaPredicted RBP9.75□□□□□ -0.85
CPNE3-203ENST00000517490 HNRNPUL2Q1KMD3 747 aaKnown RBP9.74□□□□□ -0.85
CPNE3-203ENST00000517490 NEFLP07196 543 aa9.72□□□□□ -0.85
CPNE3-203ENST00000517490 RSF1Q96T23 1441 aaPredicted RBP9.72□□□□□ -0.85
CPNE3-203ENST00000517490 ABCC9O60706 1549 aa9.69□□□□□ -0.86
CPNE3-203ENST00000517490 CLSPNQ9HAW4 1339 aa9.68□□□□□ -0.86
CPNE3-203ENST00000517490 SCRIBQ14160 1630 aa9.68□□□□□ -0.86
CPNE3-203ENST00000517490 ERICH6Q7L0X2 663 aa9.67□□□□□ -0.86
CPNE3-203ENST00000517490 CSRNP3Q8WYN3 585 aa9.62□□□□□ -0.87
CPNE3-203ENST00000517490 MIER1Q8N108 512 aa9.56□□□□□ -0.88
CPNE3-203ENST00000517490 CEP162Q5TB80 1403 aa9.54□□□□□ -0.88
CPNE3-203ENST00000517490 EEA1Q15075 1411 aa9.53□□□□□ -0.88
CPNE3-203ENST00000517490 TNIKQ9UKE5 1360 aa9.51□□□□□ -0.89
CPNE3-203ENST00000517490 ITGAEP38570 1179 aa9.51□□□□□ -0.89
CPNE3-203ENST00000517490 AMER1Q5JTC6 1135 aaPredicted RBP9.47□□□□□ -0.89
CPNE3-203ENST00000517490 ATP1B4Q9UN42 357 aaPredicted RBP9.47□□□□□ -0.89
CPNE3-203ENST00000517490 GOLGA3Q08378 1498 aa9.46□□□□□ -0.9
CPNE3-203ENST00000517490 BCANQ96GW7 911 aa9.45□□□□□ -0.9
CPNE3-203ENST00000517490 RTN4Q9NQC3 1192 aaKnown RBP9.43□□□□□ -0.9
CPNE3-203ENST00000517490 WRNQ14191 1432 aaPredicted RBP eCLIP9.42□□□□□ -0.9
CPNE3-203ENST00000517490 CLIP1P30622 1438 aa9.42□□□□□ -0.9
CPNE3-203ENST00000517490 CECR2Q9BXF3 1484 aa9.41□□□□□ -0.9
CPNE3-203ENST00000517490 ANP32CO43423 234 aa9.41□□□□□ -0.9
CPNE3-203ENST00000517490 ANP32EQ9BTT0 268 aa9.38□□□□□ -0.91
CPNE3-203ENST00000517490 FKBP8Q14318 412 aa9.38□□□□□ -0.91
CPNE3-203ENST00000517490 PLPPR3Q6T4P5 718 aa9.38□□□□□ -0.91
CPNE3-203ENST00000517490 MROH2BQ7Z745 1585 aa9.38□□□□□ -0.91
CPNE3-203ENST00000517490 CDK11AQ9UQ88 783 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-203ENST00000517490 BAZ1AQ9NRL2 1556 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-203ENST00000517490 AEBP2Q6ZN18 517 aaPredicted RBP9.37□□□□□ -0.91
CPNE3-203ENST00000517490 SUPT16HQ9Y5B9 1047 aaKnown RBP9.37□□□□□ -0.91
CPNE3-203ENST00000517490 CEP164Q9UPV0 1460 aa9.37□□□□□ -0.91
CPNE3-203ENST00000517490 FAM50AQ14320 339 aaKnown RBP9.35□□□□□ -0.91
CPNE3-203ENST00000517490 SOGA1O94964 1423 aa9.34□□□□□ -0.91
CPNE3-203ENST00000517490 DAXXQ9UER7 740 aaPredicted RBP9.32□□□□□ -0.92
CPNE3-203ENST00000517490 CCDC88BA6NC98 1476 aa9.31□□□□□ -0.92
CPNE3-203ENST00000517490 PABPN1Q86U42 306 aaKnown RBP eCLIP9.31□□□□□ -0.92
CPNE3-203ENST00000517490 DDX10Q13206 875 aaKnown RBP9.3□□□□□ -0.92
CPNE3-203ENST00000517490 MYT1LQ9UL68 1186 aa9.29□□□□□ -0.92
CPNE3-203ENST00000517490 VPS8Q8N3P4 1428 aa9.29□□□□□ -0.92
CPNE3-203ENST00000517490 ABCC8Q09428 1581 aa9.29□□□□□ -0.92
CPNE3-203ENST00000517490 WIZO95785 1651 aa9.29□□□□□ -0.92
CPNE3-203ENST00000517490 RTL5Q5HYW3 569 aaPredicted RBP9.27□□□□□ -0.92
CPNE3-203ENST00000517490 TOP2AP11388 1531 aaKnown RBP9.25□□□□□ -0.93
CPNE3-203ENST00000517490 TSHZ2Q9NRE2 1034 aa9.24□□□□□ -0.93
CPNE3-203ENST00000517490 TRIM52Q96A61 297 aa9.22□□□□□ -0.93
CPNE3-203ENST00000517490 TONSLQ96HA7 1378 aa9.22□□□□□ -0.93
CPNE3-203ENST00000517490 HNRNPUQ00839 825 aaKnown RBP eCLIP9.2□□□□□ -0.94
CPNE3-203ENST00000517490 HAP1P54257 671 aaPredicted RBP9.19□□□□□ -0.94
CPNE3-203ENST00000517490 BCL11AQ9H165 835 aa9.19□□□□□ -0.94
CPNE3-203ENST00000517490 CCNB3Q8WWL7 1395 aa9.18□□□□□ -0.94
CPNE3-203ENST00000517490 BAZ1BQ9UIG0 1483 aaKnown RBP9.17□□□□□ -0.94
CPNE3-203ENST00000517490 SLC4A1APQ9BWU0 796 aaKnown RBP9.16□□□□□ -0.94
CPNE3-203ENST00000517490 TIMELESSQ9UNS1 1208 aa9.16□□□□□ -0.94
CPNE3-203ENST00000517490 DHX57Q6P158 1386 aaKnown RBP9.16□□□□□ -0.94
CPNE3-203ENST00000517490 CCER2I3L3R5 266 aa9.16□□□□□ -0.94
CPNE3-203ENST00000517490 POLR3GLQ9BT43 218 aa9.16□□□□□ -0.94
CPNE3-203ENST00000517490 ANP32AP39687 249 aaKnown RBP9.16□□□□□ -0.94
CPNE3-203ENST00000517490 SMARCA2P51531 1590 aa9.15□□□□□ -0.94
CPNE3-203ENST00000517490 NCBP3Q53F19 620 aaKnown RBP9.15□□□□□ -0.94
CPNE3-203ENST00000517490 RBM19Q9Y4C8 960 aaKnown RBP9.15□□□□□ -0.94
CPNE3-203ENST00000517490 RUSC2Q8N2Y8 1516 aa9.15□□□□□ -0.95
CPNE3-203ENST00000517490 PRKCSHP14314 528 aaPredicted RBP9.14□□□□□ -0.95
CPNE3-203ENST00000517490 KIF27Q86VH2 1401 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms