RNA–Protein interactions for RNA: ENST00000374399.8

NIPAL3-204, Transcript of NIPA like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPAL3, Length 1,711 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3-204ENST00000374399 NISCHQ9Y2I1 1504 aa36.08■■■■□ 3.37
NIPAL3-204ENST00000374399 CCDC180Q9P1Z9 1646 aa31.5■■■□□ 2.63
NIPAL3-204ENST00000374399 ZCCHC6Q5VYS8 1495 aaKnown RBP30.3■■■□□ 2.44
NIPAL3-204ENST00000374399 ABCC9O60706 1549 aa29.85■■■□□ 2.37
NIPAL3-204ENST00000374399 DCAF1Q9Y4B6 1507 aa29.83■■■□□ 2.37
NIPAL3-204ENST00000374399 DCAF8L2P0C7V8 631 aa29.69■■■□□ 2.34
NIPAL3-204ENST00000374399 MYO15BQ96JP2 1530 aa29.51■■■□□ 2.31
NIPAL3-204ENST00000374399 NACADO15069 1562 aa29.33■■■□□ 2.29
NIPAL3-204ENST00000374399 SHROOM4Q9ULL8 1493 aa29.3■■■□□ 2.28
NIPAL3-204ENST00000374399 RB1CC1Q8TDY2 1594 aa29.09■■■□□ 2.25
NIPAL3-204ENST00000374399 SCRIBQ14160 1630 aa28.94■■■□□ 2.22
NIPAL3-204ENST00000374399 UNC13AQ9UPW8 1703 aa28.63■■■□□ 2.17
NIPAL3-204ENST00000374399 BICRAQ9NZM4 1560 aa28.33■■■□□ 2.13
NIPAL3-204ENST00000374399 PABPN1Q86U42 306 aaKnown RBP eCLIP28.14■■■□□ 2.1
NIPAL3-204ENST00000374399 SUPT5HO00267 1087 aaKnown RBP28.09■■■□□ 2.09
NIPAL3-204ENST00000374399 CECR2Q9BXF3 1484 aa28.08■■■□□ 2.09
NIPAL3-204ENST00000374399 RSF1Q96T23 1441 aaPredicted RBP27.95■■■□□ 2.07
NIPAL3-204ENST00000374399 MROH2BQ7Z745 1585 aa27.89■■■□□ 2.06
NIPAL3-204ENST00000374399 BAZ1AQ9NRL2 1556 aaPredicted RBP27.82■■■□□ 2.04
NIPAL3-204ENST00000374399 SMARCA4P51532 1647 aa27.76■■■□□ 2.03
NIPAL3-204ENST00000374399 WIZO95785 1651 aa27.66■■■□□ 2.02
NIPAL3-204ENST00000374399 PEG3Q9GZU2 1588 aa27.45■■□□□ 1.98
NIPAL3-204ENST00000374399 EIF4G1Q04637 1599 aaKnown RBP27.42■■□□□ 1.98
NIPAL3-204ENST00000374399 TOP2AP11388 1531 aaKnown RBP27.33■■□□□ 1.97
NIPAL3-204ENST00000374399 ATAD2BQ9ULI0 1458 aa27.33■■□□□ 1.97
NIPAL3-204ENST00000374399 SMARCA2P51531 1590 aa27.25■■□□□ 1.95
NIPAL3-204ENST00000374399 BAZ1BQ9UIG0 1483 aaKnown RBP27.11■■□□□ 1.93
NIPAL3-204ENST00000374399 NCAPD3P42695 1498 aa27.1■■□□□ 1.93
NIPAL3-204ENST00000374399 CCDC88BA6NC98 1476 aa27.07■■□□□ 1.92
NIPAL3-204ENST00000374399 CC2D2AQ9P2K1 1620 aa27.05■■□□□ 1.92
NIPAL3-204ENST00000374399 HMGXB3Q12766 1538 aa27.04■■□□□ 1.92
NIPAL3-204ENST00000374399 CHIC1Q5VXU3 224 aa26.91■■□□□ 1.9
NIPAL3-204ENST00000374399 DNAJC5BQ9UF47 199 aa26.51■■□□□ 1.83
NIPAL3-204ENST00000374399 ABCC8Q09428 1581 aa26.47■■□□□ 1.83
NIPAL3-204ENST00000374399 CFTRP13569 1480 aa26.47■■□□□ 1.83
NIPAL3-204ENST00000374399 TRIM41Q8WV44 630 aa26.4■■□□□ 1.82
NIPAL3-204ENST00000374399 CADPSQ9ULU8 1353 aa26.37■■□□□ 1.81
NIPAL3-204ENST00000374399 PRDM2Q13029 1718 aa26.34■■□□□ 1.81
NIPAL3-204ENST00000374399 WRNQ14191 1432 aaPredicted RBP eCLIP26.26■■□□□ 1.79
NIPAL3-204ENST00000374399 SYNJ1O43426 1573 aa26.23■■□□□ 1.79
NIPAL3-204ENST00000374399 NESP48681 1621 aa26.23■■□□□ 1.79
NIPAL3-204ENST00000374399 LAMC3Q9Y6N6 1575 aa26.17■■□□□ 1.78
NIPAL3-204ENST00000374399 TOP2BQ02880 1626 aa26.1■■□□□ 1.77
NIPAL3-204ENST00000374399 BIVM-ERCC5R4GMW8 1640 aa26.09■■□□□ 1.77
NIPAL3-204ENST00000374399 CUX1P39880 1505 aa26.08■■□□□ 1.77
NIPAL3-204ENST00000374399 FANCD2Q9BXW9 1451 aa26.08■■□□□ 1.77
NIPAL3-204ENST00000374399 SOGA1O94964 1423 aa25.95■■□□□ 1.74
NIPAL3-204ENST00000374399 FAM9AQ8IZU1 332 aaPredicted RBP25.94■■□□□ 1.74
NIPAL3-204ENST00000374399 PDS5BQ9NTI5 1447 aa25.92■■□□□ 1.74
NIPAL3-204ENST00000374399 KIF21AQ7Z4S6 1674 aa25.91■■□□□ 1.74
NIPAL3-204ENST00000374399 CEP164Q9UPV0 1460 aa25.9■■□□□ 1.74
NIPAL3-204ENST00000374399 RUSC2Q8N2Y8 1516 aa25.9■■□□□ 1.74
NIPAL3-204ENST00000374399 LOC105371045A0A1W2PR82 267 aa25.88■■□□□ 1.73
NIPAL3-204ENST00000374399 DNMBPQ6XZF7 1577 aa25.84■■□□□ 1.73
NIPAL3-204ENST00000374399 URB2Q14146 1524 aaKnown RBP25.81■■□□□ 1.72
NIPAL3-204ENST00000374399 TOPBP1Q92547 1522 aa25.81■■□□□ 1.72
NIPAL3-204ENST00000374399 EEA1Q15075 1411 aa25.79■■□□□ 1.72
NIPAL3-204ENST00000374399 FGD5Q6ZNL6 1462 aa25.78■■□□□ 1.72
NIPAL3-204ENST00000374399 POLA1P09884 1462 aaPredicted RBP25.68■■□□□ 1.7
NIPAL3-204ENST00000374399 CSRNP3Q8WYN3 585 aa25.68■■□□□ 1.7
NIPAL3-204ENST00000374399 MRC2Q9UBG0 1479 aa25.63■■□□□ 1.69
NIPAL3-204ENST00000374399 RAD54L2Q9Y4B4 1467 aa25.61■■□□□ 1.69
NIPAL3-204ENST00000374399 KIF27Q86VH2 1401 aa25.58■■□□□ 1.69
NIPAL3-204ENST00000374399 EHMT2Q96KQ7 1210 aa25.57■■□□□ 1.68
NIPAL3-204ENST00000374399 CUX2O14529 1486 aa25.56■■□□□ 1.68
NIPAL3-204ENST00000374399 ABCA10Q8WWZ4 1543 aa25.55■■□□□ 1.68
NIPAL3-204ENST00000374399 WDR62O43379 1518 aa25.55■■□□□ 1.68
NIPAL3-204ENST00000374399 WDR97A6NE52 1622 aa25.53■■□□□ 1.68
NIPAL3-204ENST00000374399 ERCC6Q03468 1493 aa25.53■■□□□ 1.68
NIPAL3-204ENST00000374399 KIF21BO75037 1637 aa25.53■■□□□ 1.68
NIPAL3-204ENST00000374399 THOC2Q8NI27 1593 aaKnown RBP25.52■■□□□ 1.68
NIPAL3-204ENST00000374399 TARBP1Q13395 1621 aaKnown RBP25.48■■□□□ 1.67
NIPAL3-204ENST00000374399 PRXQ9BXM0 1461 aa25.45■■□□□ 1.67
NIPAL3-204ENST00000374399 GOLGA3Q08378 1498 aa25.45■■□□□ 1.66
NIPAL3-204ENST00000374399 IGF1RP08069 1367 aa25.43■■□□□ 1.66
NIPAL3-204ENST00000374399 RAPGEF2Q9Y4G8 1499 aa25.42■■□□□ 1.66
NIPAL3-204ENST00000374399 ABCA5Q8WWZ7 1642 aa25.38■■□□□ 1.65
NIPAL3-204ENST00000374399 TNIKQ9UKE5 1360 aa25.37■■□□□ 1.65
NIPAL3-204ENST00000374399 ERICH3Q5RHP9 1530 aa25.36■■□□□ 1.65
NIPAL3-204ENST00000374399 TDRD9Q8NDG6 1382 aaKnown RBP25.33■■□□□ 1.65
NIPAL3-204ENST00000374399 IFT140Q96RY7 1462 aa25.29■■□□□ 1.64
NIPAL3-204ENST00000374399 UBTFP17480 764 aaKnown RBP25.28■■□□□ 1.64
NIPAL3-204ENST00000374399 GAPVD1Q14C86 1478 aa25.28■■□□□ 1.64
NIPAL3-204ENST00000374399 CARMIL1Q5VZK9 1371 aa25.26■■□□□ 1.63
NIPAL3-204ENST00000374399 ZNF608Q9ULD9 1512 aaPredicted RBP25.23■■□□□ 1.63
NIPAL3-204ENST00000374399 CEP162Q5TB80 1403 aa25.22■■□□□ 1.63
NIPAL3-204ENST00000374399 AQRO60306 1485 aaKnown RBP eCLIP25.21■■□□□ 1.633e-6■■■■□ 20.3
NIPAL3-204ENST00000374399 CUL7Q14999 1698 aa25.21■■□□□ 1.63
NIPAL3-204ENST00000374399 PBRM1Q86U86 1689 aa25.18■■□□□ 1.62
NIPAL3-204ENST00000374399 EIF4G3O43432 1585 aaKnown RBP25.12■■□□□ 1.61
NIPAL3-204ENST00000374399 GRIN2BQ13224 1484 aa25.08■■□□□ 1.61
NIPAL3-204ENST00000374399 ADAMTS12P58397 1594 aa25.04■■□□□ 1.6
NIPAL3-204ENST00000374399 CLIP1P30622 1438 aa25.04■■□□□ 1.6
NIPAL3-204ENST00000374399 FHAD1B1AJZ9 1412 aa24.99■■□□□ 1.59
NIPAL3-204ENST00000374399 SNAPC4Q5SXM2 1469 aa24.96■■□□□ 1.59
NIPAL3-204ENST00000374399 CTTNBP2Q8WZ74 1663 aa24.94■■□□□ 1.58
NIPAL3-204ENST00000374399 RANGAP1P46060 587 aaPredicted RBP24.91■■□□□ 1.58
NIPAL3-204ENST00000374399 MAGI1Q96QZ7 1491 aaPredicted RBP24.89■■□□□ 1.58
NIPAL3-204ENST00000374399 ARAP1Q96P48 1450 aa24.89■■□□□ 1.57
NIPAL3-204ENST00000374399 ARHGAP35Q9NRY4 1499 aa24.89■■□□□ 1.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms