RNA–Protein interactions for RNA: ENST00000529355.1

CTR9-204, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene CTR9, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-204ENST00000529355 AEBP2Q6ZN18 517 aaPredicted RBP26.2■■□□□ 1.78
CTR9-204ENST00000529355 CHIC1Q5VXU3 224 aa24.66■■□□□ 1.54
CTR9-204ENST00000529355 SENP3Q9H4L4 574 aaPredicted RBP22.68■■□□□ 1.22
CTR9-204ENST00000529355 PHF23Q9BUL5 403 aaPredicted RBP22.16■■□□□ 1.14
CTR9-204ENST00000529355 POTEDQ86YR6 584 aa21.27■■□□□ 1
CTR9-204ENST00000529355 FOXD1Q16676 465 aa21.13■□□□□ 0.97
CTR9-204ENST00000529355 MSH5O43196 834 aa20.28■□□□□ 0.84
CTR9-204ENST00000529355 PIAS4Q8N2W9 510 aaPredicted RBP19.58■□□□□ 0.72
CTR9-204ENST00000529355 PLPPR3Q6T4P5 718 aa19.49■□□□□ 0.71
CTR9-204ENST00000529355 PPP6R1Q9UPN7 881 aa18.97■□□□□ 0.63
CTR9-204ENST00000529355 ADRA2BP18089 450 aa18.88■□□□□ 0.61
CTR9-204ENST00000529355 CACNB1Q02641 598 aaPredicted RBP17.92■□□□□ 0.46
CTR9-204ENST00000529355 DMRT2Q9Y5R5 561 aa17.79■□□□□ 0.44
CTR9-204ENST00000529355 MAPK8IP2Q13387 824 aaPredicted RBP17.59■□□□□ 0.41
CTR9-204ENST00000529355 SCAF1Q9H7N4 1312 aaKnown RBP17.48■□□□□ 0.39
CTR9-204ENST00000529355 PPP4R3CPQ6ZMV5 832 aa17.28■□□□□ 0.36
CTR9-204ENST00000529355 RNF39Q9H2S5 420 aa17.14■□□□□ 0.33
CTR9-204ENST00000529355 KCNA4P22459 653 aa17.13■□□□□ 0.33
CTR9-204ENST00000529355 DCAF8L1A6NGE4 600 aa17.11■□□□□ 0.33
CTR9-204ENST00000529355 C1QBPQ07021 282 aaKnown RBP16.91■□□□□ 0.3
CTR9-204ENST00000529355 HOXD11P31277 338 aaPredicted RBP16.77■□□□□ 0.28
CTR9-204ENST00000529355 NCBP3Q53F19 620 aaKnown RBP16.71■□□□□ 0.27
CTR9-204ENST00000529355 CNKSR2Q8WXI2 1034 aa16.68■□□□□ 0.26
CTR9-204ENST00000529355 NPM3O75607 178 aaKnown RBP16.66■□□□□ 0.26
CTR9-204ENST00000529355 POTEHQ6S545 545 aa16.52■□□□□ 0.24
CTR9-204ENST00000529355 DNAJC5BQ9UF47 199 aa16.47■□□□□ 0.23
CTR9-204ENST00000529355 RNF216Q9NWF9 866 aaPredicted RBP16.42■□□□□ 0.22
CTR9-204ENST00000529355 SLC4A1APQ9BWU0 796 aaKnown RBP16.24■□□□□ 0.19
CTR9-204ENST00000529355 EHMT2Q96KQ7 1210 aa16.04■□□□□ 0.16
CTR9-204ENST00000529355 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16■□□□□ 0.15
CTR9-204ENST00000529355 ZBTB22O15209 634 aa15.83■□□□□ 0.12
CTR9-204ENST00000529355 CSRNP3Q8WYN3 585 aa15.79■□□□□ 0.12
CTR9-204ENST00000529355 SLC4A2P04920 1241 aa15.74■□□□□ 0.11
CTR9-204ENST00000529355 DSG3P32926 999 aa15.72■□□□□ 0.11
CTR9-204ENST00000529355 CAPN15O75808 1086 aa15.62■□□□□ 0.09
CTR9-204ENST00000529355 FOXD4L1Q9NU39 408 aa15.59■□□□□ 0.09
CTR9-204ENST00000529355 SPINK5Q9NQ38 1064 aaPredicted RBP15.52■□□□□ 0.08
CTR9-204ENST00000529355 U3KPZ7 1027 aaPredicted RBP15.49■□□□□ 0.07
CTR9-204ENST00000529355 MYCNP04198 464 aaPredicted RBP15.27■□□□□ 0.04
CTR9-204ENST00000529355 APLP2Q06481 763 aa15.18■□□□□ 0.02
CTR9-204ENST00000529355 RBM42Q9BTD8 480 aaKnown RBP15.16■□□□□ 0.02
CTR9-204ENST00000529355 ZNF219Q9P2Y4 722 aaPredicted RBP15.15■□□□□ 0.02
CTR9-204ENST00000529355 TRHP20396 242 aaPredicted RBP15.12■□□□□ 0.01
CTR9-204ENST00000529355 ABCB7O75027 752 aa15.11■□□□□ 0.01
CTR9-204ENST00000529355 CHRDL2Q6WN34 429 aa15.1■□□□□ 0.01
CTR9-204ENST00000529355 ATF5Q9Y2D1 282 aaPredicted RBP15.08■□□□□ 0
CTR9-204ENST00000529355 SP7Q8TDD2 431 aaPredicted RBP15.06■□□□□ 0
CTR9-204ENST00000529355 SAMD1Q6SPF0 538 aaPredicted RBP14.96□□□□□ -0.01
CTR9-204ENST00000529355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.94□□□□□ -0.02
CTR9-204ENST00000529355 ATXN8OSP0DMR3 200 aa14.94□□□□□ -0.02
CTR9-204ENST00000529355 HNRNPUL2Q1KMD3 747 aaKnown RBP14.94□□□□□ -0.02
CTR9-204ENST00000529355 AKT1S1Q96B36 256 aa14.55□□□□□ -0.08
CTR9-204ENST00000529355 HAX1O00165 279 aa14.54□□□□□ -0.08
CTR9-204ENST00000529355 POLA2Q14181 598 aa14.54□□□□□ -0.08
CTR9-204ENST00000529355 PIP4P2Q8N4L2 257 aa14.5□□□□□ -0.09
CTR9-204ENST00000529355 MKRN4PQ13434 485 aaPredicted RBP14.38□□□□□ -0.11
CTR9-204ENST00000529355 REM2Q8IYK8 340 aaPredicted RBP14.36□□□□□ -0.11
CTR9-204ENST00000529355 FXR2P51116 673 aaKnown RBP eCLIP14.28□□□□□ -0.12
CTR9-204ENST00000529355 ZBTB12Q9Y330 459 aaPredicted RBP14.27□□□□□ -0.13
CTR9-204ENST00000529355 FKBP8Q14318 412 aa14.22□□□□□ -0.13
CTR9-204ENST00000529355 PITPNM1O00562 1244 aa14.2□□□□□ -0.14
CTR9-204ENST00000529355 FBLN2P98095 1184 aa14.17□□□□□ -0.14
CTR9-204ENST00000529355 EVX2Q03828 476 aa14.15□□□□□ -0.14
CTR9-204ENST00000529355 LHX8Q68G74 356 aa14.1□□□□□ -0.15
CTR9-204ENST00000529355 OSCARQ8IYS5 282 aa14.06□□□□□ -0.16
CTR9-204ENST00000529355 SPDYE4A6NLX3 237 aa14.02□□□□□ -0.17
CTR9-204ENST00000529355 PLSCR2Q9NRY7 297 aa13.99□□□□□ -0.17
CTR9-204ENST00000529355 GABBR2O75899 941 aa13.87□□□□□ -0.19
CTR9-204ENST00000529355 C19orf67A6NJJ6 358 aa13.86□□□□□ -0.19
CTR9-204ENST00000529355 PRKAR2AP13861 404 aaKnown RBP13.85□□□□□ -0.19
CTR9-204ENST00000529355 ZNF692Q9BU19 519 aaPredicted RBP13.85□□□□□ -0.19
CTR9-204ENST00000529355 SPDYE2BA6NHP3 402 aa13.81□□□□□ -0.2
CTR9-204ENST00000529355 SPDYE6P0CI01 402 aa13.81□□□□□ -0.2
CTR9-204ENST00000529355 SPDYE2Q495Y8 402 aa13.81□□□□□ -0.2
CTR9-204ENST00000529355 PROM2Q8N271 834 aa13.8□□□□□ -0.2
CTR9-204ENST00000529355 SSUH2Q9Y2M2 353 aa13.79□□□□□ -0.2
CTR9-204ENST00000529355 PABPN1Q86U42 306 aaKnown RBP eCLIP13.71□□□□□ -0.21
CTR9-204ENST00000529355 SPDYE1Q8NFV5 336 aaPredicted RBP13.69□□□□□ -0.22
CTR9-204ENST00000529355 CLEC11AQ9Y240 323 aa13.66□□□□□ -0.22
CTR9-204ENST00000529355 CLCN6P51797 869 aa13.52□□□□□ -0.25
CTR9-204ENST00000529355 POTEIP0CG38 1075 aa13.5□□□□□ -0.25
CTR9-204ENST00000529355 FBXO3Q9UK99 471 aa13.49□□□□□ -0.25
CTR9-204ENST00000529355 VASPP50552 380 aaPredicted RBP13.43□□□□□ -0.26
CTR9-204ENST00000529355 CHADLQ6NUI6 762 aa13.43□□□□□ -0.26
CTR9-204ENST00000529355 DCBLD2Q96PD2 775 aa13.38□□□□□ -0.27
CTR9-204ENST00000529355 CD44P16070 742 aaKnown RBP13.36□□□□□ -0.27
CTR9-204ENST00000529355 IFNLR1Q8IU57 520 aaPredicted RBP13.34□□□□□ -0.27
CTR9-204ENST00000529355 STAG3Q9UJ98 1225 aa13.34□□□□□ -0.27
CTR9-204ENST00000529355 POTEMA6NI47 508 aa13.33□□□□□ -0.28
CTR9-204ENST00000529355 PRR29P0C7W0 189 aa13.33□□□□□ -0.28
CTR9-204ENST00000529355 MIER1Q8N108 512 aa13.28□□□□□ -0.28
CTR9-204ENST00000529355 PCDH10Q9P2E7 1040 aa13.28□□□□□ -0.28
CTR9-204ENST00000529355 POTEGQ6S5H5 508 aa13.25□□□□□ -0.29
CTR9-204ENST00000529355 RTN4Q9NQC3 1192 aaKnown RBP13.25□□□□□ -0.29
CTR9-204ENST00000529355 PLCD3Q8N3E9 789 aa13.24□□□□□ -0.29
CTR9-204ENST00000529355 OTUD5Q96G74 571 aa13.23□□□□□ -0.29
CTR9-204ENST00000529355 CREBZFQ9NS37 354 aa13.2□□□□□ -0.3
CTR9-204ENST00000529355 FARP1Q9Y4F1 1045 aaPredicted RBP13.2□□□□□ -0.3
CTR9-204ENST00000529355 KLHL34Q8N239 644 aa13.16□□□□□ -0.3
CTR9-204ENST00000529355 ZNF579Q8NAF0 562 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 151.9 ms