RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 NISCHQ9Y2I1 1504 aa30.58■■■□□ 2.49
CPNE3-205ENST00000522240 CHIC1Q5VXU3 224 aa28.01■■■□□ 2.07
CPNE3-205ENST00000522240 AEBP2Q6ZN18 517 aaPredicted RBP27.92■■■□□ 2.06
CPNE3-205ENST00000522240 CCDC180Q9P1Z9 1646 aa26.99■■□□□ 1.91
CPNE3-205ENST00000522240 ABCC9O60706 1549 aa25.87■■□□□ 1.73
CPNE3-205ENST00000522240 ZCCHC6Q5VYS8 1495 aaKnown RBP25.67■■□□□ 1.7
CPNE3-205ENST00000522240 DCAF1Q9Y4B6 1507 aa25.42■■□□□ 1.66
CPNE3-205ENST00000522240 MYO15BQ96JP2 1530 aa25.27■■□□□ 1.64
CPNE3-205ENST00000522240 NACADO15069 1562 aa25.16■■□□□ 1.62
CPNE3-205ENST00000522240 DCAF8L2P0C7V8 631 aa25.05■■□□□ 1.6
CPNE3-205ENST00000522240 RB1CC1Q8TDY2 1594 aa25.01■■□□□ 1.59
CPNE3-205ENST00000522240 PHF23Q9BUL5 403 aaPredicted RBP24.7■■□□□ 1.54
CPNE3-205ENST00000522240 SCRIBQ14160 1630 aa24.59■■□□□ 1.53
CPNE3-205ENST00000522240 UNC13AQ9UPW8 1703 aa24.47■■□□□ 1.51
CPNE3-205ENST00000522240 DNAJC5BQ9UF47 199 aa24.45■■□□□ 1.5
CPNE3-205ENST00000522240 SHROOM4Q9ULL8 1493 aa24.45■■□□□ 1.5
CPNE3-205ENST00000522240 BICRAQ9NZM4 1560 aa24.23■■□□□ 1.47
CPNE3-205ENST00000522240 PABPN1Q86U42 306 aaKnown RBP eCLIP24.05■■□□□ 1.44
CPNE3-205ENST00000522240 CECR2Q9BXF3 1484 aa23.69■■□□□ 1.38
CPNE3-205ENST00000522240 BAZ1AQ9NRL2 1556 aaPredicted RBP23.69■■□□□ 1.38
CPNE3-205ENST00000522240 SENP3Q9H4L4 574 aaPredicted RBP23.63■■□□□ 1.37
CPNE3-205ENST00000522240 SMARCA4P51532 1647 aa23.62■■□□□ 1.37
CPNE3-205ENST00000522240 MROH2BQ7Z745 1585 aa23.57■■□□□ 1.36
CPNE3-205ENST00000522240 EIF4G1Q04637 1599 aaKnown RBP23.53■■□□□ 1.36
CPNE3-205ENST00000522240 RSF1Q96T23 1441 aaPredicted RBP23.52■■□□□ 1.36
CPNE3-205ENST00000522240 PEG3Q9GZU2 1588 aa23.42■■□□□ 1.34
CPNE3-205ENST00000522240 CC2D2AQ9P2K1 1620 aa23.38■■□□□ 1.33
CPNE3-205ENST00000522240 WIZO95785 1651 aa23.35■■□□□ 1.33
CPNE3-205ENST00000522240 SMARCA2P51531 1590 aa23.33■■□□□ 1.33
CPNE3-205ENST00000522240 SUPT5HO00267 1087 aaKnown RBP23.3■■□□□ 1.32
CPNE3-205ENST00000522240 ATAD2BQ9ULI0 1458 aa23.27■■□□□ 1.32
CPNE3-205ENST00000522240 TOP2AP11388 1531 aaKnown RBP23.19■■□□□ 1.3
CPNE3-205ENST00000522240 HMGXB3Q12766 1538 aa23.19■■□□□ 1.3
CPNE3-205ENST00000522240 NCAPD3P42695 1498 aa23.17■■□□□ 1.3
CPNE3-205ENST00000522240 BAZ1BQ9UIG0 1483 aaKnown RBP23.13■■□□□ 1.29
CPNE3-205ENST00000522240 PLPPR3Q6T4P5 718 aa23.1■■□□□ 1.29
CPNE3-205ENST00000522240 CCDC88BA6NC98 1476 aa22.84■■□□□ 1.25
CPNE3-205ENST00000522240 DNAJC5Q9H3Z4 198 aa22.69■■□□□ 1.22
CPNE3-205ENST00000522240 CFTRP13569 1480 aa22.54■■□□□ 1.2
CPNE3-205ENST00000522240 PRDM2Q13029 1718 aa22.53■■□□□ 1.2
CPNE3-205ENST00000522240 LAMC3Q9Y6N6 1575 aa22.5■■□□□ 1.19
CPNE3-205ENST00000522240 CADPSQ9ULU8 1353 aa22.5■■□□□ 1.19
CPNE3-205ENST00000522240 CUX2O14529 1486 aa22.48■■□□□ 1.19
CPNE3-205ENST00000522240 ERCC6Q03468 1493 aa22.39■■□□□ 1.17
CPNE3-205ENST00000522240 NESP48681 1621 aa22.36■■□□□ 1.17
CPNE3-205ENST00000522240 PDS5BQ9NTI5 1447 aa22.26■■□□□ 1.15
CPNE3-205ENST00000522240 FANCD2Q9BXW9 1451 aa22.26■■□□□ 1.15
CPNE3-205ENST00000522240 ABCC8Q09428 1581 aa22.22■■□□□ 1.15
CPNE3-205ENST00000522240 CEP164Q9UPV0 1460 aa22.2■■□□□ 1.14
CPNE3-205ENST00000522240 KIF21AQ7Z4S6 1674 aa22.19■■□□□ 1.14
CPNE3-205ENST00000522240 WRNQ14191 1432 aaPredicted RBP eCLIP22.17■■□□□ 1.14
CPNE3-205ENST00000522240 BIVM-ERCC5R4GMW8 1640 aa22.13■■□□□ 1.13
CPNE3-205ENST00000522240 SYNJ1O43426 1573 aa22.11■■□□□ 1.13
CPNE3-205ENST00000522240 TOP2BQ02880 1626 aa22.1■■□□□ 1.13
CPNE3-205ENST00000522240 CUX1P39880 1505 aa22.08■■□□□ 1.13
CPNE3-205ENST00000522240 DNMBPQ6XZF7 1577 aa22.07■■□□□ 1.12
CPNE3-205ENST00000522240 MRC2Q9UBG0 1479 aa22.03■■□□□ 1.12
CPNE3-205ENST00000522240 TRIM41Q8WV44 630 aa22.01■■□□□ 1.11
CPNE3-205ENST00000522240 URB2Q14146 1524 aaKnown RBP22.01■■□□□ 1.11
CPNE3-205ENST00000522240 TOPBP1Q92547 1522 aa22■■□□□ 1.11
CPNE3-205ENST00000522240 THOC2Q8NI27 1593 aaKnown RBP21.99■■□□□ 1.11
CPNE3-205ENST00000522240 WDR62O43379 1518 aa21.96■■□□□ 1.11
CPNE3-205ENST00000522240 FGD5Q6ZNL6 1462 aa21.9■■□□□ 1.1
CPNE3-205ENST00000522240 POLA1P09884 1462 aaPredicted RBP21.85■■□□□ 1.09
CPNE3-205ENST00000522240 FOXD1Q16676 465 aa21.81■■□□□ 1.08
CPNE3-205ENST00000522240 WDR97A6NE52 1622 aa21.77■■□□□ 1.08
CPNE3-205ENST00000522240 EEA1Q15075 1411 aa21.74■■□□□ 1.07
CPNE3-205ENST00000522240 ABCA10Q8WWZ4 1543 aa21.74■■□□□ 1.07
CPNE3-205ENST00000522240 TARBP1Q13395 1621 aaKnown RBP21.73■■□□□ 1.07
CPNE3-205ENST00000522240 SOGA1O94964 1423 aa21.72■■□□□ 1.07
CPNE3-205ENST00000522240 IFT140Q96RY7 1462 aa21.7■■□□□ 1.06
CPNE3-205ENST00000522240 RAD54L2Q9Y4B4 1467 aa21.7■■□□□ 1.06
CPNE3-205ENST00000522240 KIF27Q86VH2 1401 aa21.66■■□□□ 1.06
CPNE3-205ENST00000522240 ABCA5Q8WWZ7 1642 aa21.62■■□□□ 1.05
CPNE3-205ENST00000522240 RUSC2Q8N2Y8 1516 aa21.61■■□□□ 1.05
CPNE3-205ENST00000522240 ADRA2BP18089 450 aa21.61■■□□□ 1.05
CPNE3-205ENST00000522240 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
CPNE3-205ENST00000522240 EIF4G3O43432 1585 aaKnown RBP21.53■■□□□ 1.04
CPNE3-205ENST00000522240 GAPVD1Q14C86 1478 aa21.52■■□□□ 1.04
CPNE3-205ENST00000522240 ERICH3Q5RHP9 1530 aa21.51■■□□□ 1.03
CPNE3-205ENST00000522240 PBRM1Q86U86 1689 aa21.5■■□□□ 1.03
CPNE3-205ENST00000522240 ZNF608Q9ULD9 1512 aaPredicted RBP21.5■■□□□ 1.03
CPNE3-205ENST00000522240 FAM9AQ8IZU1 332 aaPredicted RBP21.49■■□□□ 1.03
CPNE3-205ENST00000522240 TDRD9Q8NDG6 1382 aaKnown RBP21.48■■□□□ 1.03
CPNE3-205ENST00000522240 KIF21BO75037 1637 aa21.48■■□□□ 1.03
CPNE3-205ENST00000522240 CSRNP3Q8WYN3 585 aa21.48■■□□□ 1.03
CPNE3-205ENST00000522240 CUL7Q14999 1698 aa21.47■■□□□ 1.03
CPNE3-205ENST00000522240 GRIN2BQ13224 1484 aa21.45■■□□□ 1.02
CPNE3-205ENST00000522240 OSCARQ8IYS5 282 aa21.43■■□□□ 1.02
CPNE3-205ENST00000522240 IGF1RP08069 1367 aa21.43■■□□□ 1.02
CPNE3-205ENST00000522240 AQRO60306 1485 aaKnown RBP eCLIP21.43■■□□□ 1.022e-9■■■■■ 39.4
CPNE3-205ENST00000522240 PRXQ9BXM0 1461 aa21.43■■□□□ 1.02
CPNE3-205ENST00000522240 GOLGA3Q08378 1498 aa21.38■■□□□ 1.01
CPNE3-205ENST00000522240 ADAMTS12P58397 1594 aa21.37■■□□□ 1.01
CPNE3-205ENST00000522240 MAGI1Q96QZ7 1491 aaPredicted RBP21.34■■□□□ 1.01
CPNE3-205ENST00000522240 CARMIL1Q5VZK9 1371 aa21.34■■□□□ 1.01
CPNE3-205ENST00000522240 RAPGEF2Q9Y4G8 1499 aa21.32■■□□□ 1
CPNE3-205ENST00000522240 SNAPC4Q5SXM2 1469 aa21.32■■□□□ 1
CPNE3-205ENST00000522240 FHAD1B1AJZ9 1412 aa21.31■■□□□ 1
CPNE3-205ENST00000522240 SYNJ2O15056 1496 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 137.7 ms