RNA–Protein interactions for RNA: ENST00000526874.5

CTR9-203, Transcript of CTR9 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene CTR9, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTR9-203ENST00000526874 AEBP2Q6ZN18 517 aaPredicted RBP21.18■□□□□ 0.98
CTR9-203ENST00000526874 CHIC1Q5VXU3 224 aa20.67■□□□□ 0.9
CTR9-203ENST00000526874 PHF23Q9BUL5 403 aaPredicted RBP18.25■□□□□ 0.51
CTR9-203ENST00000526874 SENP3Q9H4L4 574 aaPredicted RBP17.85■□□□□ 0.45
CTR9-203ENST00000526874 PLPPR3Q6T4P5 718 aa16.78■□□□□ 0.28
CTR9-203ENST00000526874 FOXD1Q16676 465 aa16.64■□□□□ 0.25
CTR9-203ENST00000526874 ADRA2BP18089 450 aa16.11■□□□□ 0.17
CTR9-203ENST00000526874 PPP6R1Q9UPN7 881 aa16.1■□□□□ 0.17
CTR9-203ENST00000526874 PIAS4Q8N2W9 510 aaPredicted RBP15.72■□□□□ 0.11
CTR9-203ENST00000526874 MSH5O43196 834 aa15.21■□□□□ 0.03
CTR9-203ENST00000526874 PPP4R3CPQ6ZMV5 832 aa14.85□□□□□ -0.03
CTR9-203ENST00000526874 KCNA4P22459 653 aa14.65□□□□□ -0.06
CTR9-203ENST00000526874 MAPK8IP2Q13387 824 aaPredicted RBP14.61□□□□□ -0.07
CTR9-203ENST00000526874 SCAF1Q9H7N4 1312 aaKnown RBP14.57□□□□□ -0.08
CTR9-203ENST00000526874 NCBP3Q53F19 620 aaKnown RBP14.4□□□□□ -0.1
CTR9-203ENST00000526874 CNKSR2Q8WXI2 1034 aa14.36□□□□□ -0.11
CTR9-203ENST00000526874 NPM3O75607 178 aaKnown RBP14.29□□□□□ -0.12
CTR9-203ENST00000526874 DMRT2Q9Y5R5 561 aa14.27□□□□□ -0.13
CTR9-203ENST00000526874 RNF216Q9NWF9 866 aaPredicted RBP14.06□□□□□ -0.16
CTR9-203ENST00000526874 HOXD11P31277 338 aaPredicted RBP13.98□□□□□ -0.17
CTR9-203ENST00000526874 SLC4A1APQ9BWU0 796 aaKnown RBP13.91□□□□□ -0.18
CTR9-203ENST00000526874 POTEDQ86YR6 584 aa13.84□□□□□ -0.19
CTR9-203ENST00000526874 DCAF8L1A6NGE4 600 aa13.77□□□□□ -0.21
CTR9-203ENST00000526874 EHMT2Q96KQ7 1210 aa13.7□□□□□ -0.22
CTR9-203ENST00000526874 DNAJC5BQ9UF47 199 aa13.65□□□□□ -0.22
CTR9-203ENST00000526874 ZBTB22O15209 634 aa13.5□□□□□ -0.25
CTR9-203ENST00000526874 SLC4A2P04920 1241 aa13.48□□□□□ -0.25
CTR9-203ENST00000526874 CSRNP3Q8WYN3 585 aa13.43□□□□□ -0.26
CTR9-203ENST00000526874 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.39□□□□□ -0.27
CTR9-203ENST00000526874 FOXD4L1Q9NU39 408 aa13.38□□□□□ -0.27
CTR9-203ENST00000526874 U3KPZ7 1027 aaPredicted RBP13.2□□□□□ -0.3
CTR9-203ENST00000526874 MYCNP04198 464 aaPredicted RBP13.15□□□□□ -0.3
CTR9-203ENST00000526874 RNF39Q9H2S5 420 aa13.08□□□□□ -0.32
CTR9-203ENST00000526874 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.91□□□□□ -0.34
CTR9-203ENST00000526874 HNRNPUL2Q1KMD3 747 aaKnown RBP12.91□□□□□ -0.34
CTR9-203ENST00000526874 SAMD1Q6SPF0 538 aaPredicted RBP12.91□□□□□ -0.34
CTR9-203ENST00000526874 ATF5Q9Y2D1 282 aaPredicted RBP12.91□□□□□ -0.34
CTR9-203ENST00000526874 C1QBPQ07021 282 aaKnown RBP12.88□□□□□ -0.35
CTR9-203ENST00000526874 SPINK5Q9NQ38 1064 aaPredicted RBP12.86□□□□□ -0.35
CTR9-203ENST00000526874 ATXN8OSP0DMR3 200 aa12.8□□□□□ -0.36
CTR9-203ENST00000526874 CAPN15O75808 1086 aa12.77□□□□□ -0.37
CTR9-203ENST00000526874 TRHP20396 242 aaPredicted RBP12.75□□□□□ -0.37
CTR9-203ENST00000526874 APLP2Q06481 763 aa12.75□□□□□ -0.37
CTR9-203ENST00000526874 CACNB1Q02641 598 aaPredicted RBP12.74□□□□□ -0.37
CTR9-203ENST00000526874 ZNF219Q9P2Y4 722 aaPredicted RBP12.63□□□□□ -0.39
CTR9-203ENST00000526874 ABCB7O75027 752 aa12.6□□□□□ -0.39
CTR9-203ENST00000526874 POLA2Q14181 598 aa12.51□□□□□ -0.41
CTR9-203ENST00000526874 DSG3P32926 999 aa12.5□□□□□ -0.41
CTR9-203ENST00000526874 MKRN4PQ13434 485 aaPredicted RBP12.32□□□□□ -0.44
CTR9-203ENST00000526874 FBLN2P98095 1184 aa12.24□□□□□ -0.45
CTR9-203ENST00000526874 ZBTB12Q9Y330 459 aaPredicted RBP12.19□□□□□ -0.46
CTR9-203ENST00000526874 FKBP8Q14318 412 aa12.17□□□□□ -0.46
CTR9-203ENST00000526874 OSCARQ8IYS5 282 aa12.13□□□□□ -0.47
CTR9-203ENST00000526874 SPDYE4A6NLX3 237 aa12.03□□□□□ -0.48
CTR9-203ENST00000526874 ZNF692Q9BU19 519 aaPredicted RBP11.94□□□□□ -0.5
CTR9-203ENST00000526874 SPDYE2BA6NHP3 402 aa11.91□□□□□ -0.5
CTR9-203ENST00000526874 SPDYE6P0CI01 402 aa11.91□□□□□ -0.5
CTR9-203ENST00000526874 SPDYE2Q495Y8 402 aa11.91□□□□□ -0.5
CTR9-203ENST00000526874 SSUH2Q9Y2M2 353 aa11.85□□□□□ -0.51
CTR9-203ENST00000526874 RBM42Q9BTD8 480 aaKnown RBP11.83□□□□□ -0.52
CTR9-203ENST00000526874 PABPN1Q86U42 306 aaKnown RBP eCLIP11.81□□□□□ -0.52
CTR9-203ENST00000526874 PROM2Q8N271 834 aa11.78□□□□□ -0.52
CTR9-203ENST00000526874 AKT1S1Q96B36 256 aa11.72□□□□□ -0.53
CTR9-203ENST00000526874 REM2Q8IYK8 340 aaPredicted RBP11.67□□□□□ -0.54
CTR9-203ENST00000526874 CLEC11AQ9Y240 323 aa11.61□□□□□ -0.55
CTR9-203ENST00000526874 FBXO3Q9UK99 471 aa11.58□□□□□ -0.56
CTR9-203ENST00000526874 PITPNM1O00562 1244 aa11.56□□□□□ -0.56
CTR9-203ENST00000526874 SPDYE1Q8NFV5 336 aaPredicted RBP11.56□□□□□ -0.56
CTR9-203ENST00000526874 VASPP50552 380 aaPredicted RBP11.5□□□□□ -0.57
CTR9-203ENST00000526874 STAG3Q9UJ98 1225 aa11.5□□□□□ -0.57
CTR9-203ENST00000526874 PRR29P0C7W0 189 aa11.45□□□□□ -0.58
CTR9-203ENST00000526874 MIER1Q8N108 512 aa11.41□□□□□ -0.58
CTR9-203ENST00000526874 PLCD3Q8N3E9 789 aa11.41□□□□□ -0.58
CTR9-203ENST00000526874 CHRDL2Q6WN34 429 aa11.38□□□□□ -0.59
CTR9-203ENST00000526874 IFNLR1Q8IU57 520 aaPredicted RBP11.38□□□□□ -0.59
CTR9-203ENST00000526874 CHADLQ6NUI6 762 aa11.36□□□□□ -0.59
CTR9-203ENST00000526874 CREBZFQ9NS37 354 aa11.34□□□□□ -0.59
CTR9-203ENST00000526874 KLHL34Q8N239 644 aa11.31□□□□□ -0.6
CTR9-203ENST00000526874 PLEKHG5O94827 1062 aa11.27□□□□□ -0.61
CTR9-203ENST00000526874 PRKAR2AP13861 404 aaKnown RBP11.27□□□□□ -0.61
CTR9-203ENST00000526874 FXR2P51116 673 aaKnown RBP eCLIP11.27□□□□□ -0.61
CTR9-203ENST00000526874 PIP4P2Q8N4L2 257 aa11.27□□□□□ -0.61
CTR9-203ENST00000526874 MNX1P50219 401 aaPredicted RBP11.22□□□□□ -0.61
CTR9-203ENST00000526874 RTN4Q9NQC3 1192 aaKnown RBP11.2□□□□□ -0.62
CTR9-203ENST00000526874 SPOCK2Q92563 424 aa11.18□□□□□ -0.62
CTR9-203ENST00000526874 SLC24A1O60721 1099 aa11.16□□□□□ -0.62
CTR9-203ENST00000526874 ZBTB47Q9UFB7 747 aaPredicted RBP11.16□□□□□ -0.62
CTR9-203ENST00000526874 FARP1Q9Y4F1 1045 aaPredicted RBP11.15□□□□□ -0.62
CTR9-203ENST00000526874 AMER1Q5JTC6 1135 aaPredicted RBP11.11□□□□□ -0.63
CTR9-203ENST00000526874 NUBP1P53384 320 aa11.1□□□□□ -0.63
CTR9-203ENST00000526874 RASEFQ8IZ41 740 aa11.08□□□□□ -0.64
CTR9-203ENST00000526874 NPM1P06748 294 aaKnown RBP eCLIP11.07□□□□□ -0.64
CTR9-203ENST00000526874 CIZ1Q9ULV3 898 aaPredicted RBP11.07□□□□□ -0.64
CTR9-203ENST00000526874 DCAF8Q5TAQ9 597 aa11.03□□□□□ -0.64
CTR9-203ENST00000526874 TSPYL2Q9H2G4 693 aaPredicted RBP11.03□□□□□ -0.64
CTR9-203ENST00000526874 PKD2Q13563 968 aa11.02□□□□□ -0.65
CTR9-203ENST00000526874 FAM212AQ96EL1 285 aa10.99□□□□□ -0.65
CTR9-203ENST00000526874 POTEHQ6S545 545 aa10.96□□□□□ -0.65
CTR9-203ENST00000526874 ECM2O94769 699 aaPredicted RBP10.95□□□□□ -0.66
CTR9-203ENST00000526874 CD44P16070 742 aaKnown RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms