RNA–Protein interactions for RNA: ENST00000621783.4

CPNE3-212, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 817 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-212ENST00000621783 NISCHQ9Y2I1 1504 aa24.81■■□□□ 1.56
CPNE3-212ENST00000621783 CCDC180Q9P1Z9 1646 aa21.82■■□□□ 1.08
CPNE3-212ENST00000621783 ZCCHC6Q5VYS8 1495 aaKnown RBP20.83■□□□□ 0.93
CPNE3-212ENST00000621783 ABCC9O60706 1549 aa20.73■□□□□ 0.91
CPNE3-212ENST00000621783 DCAF1Q9Y4B6 1507 aa20.54■□□□□ 0.88
CPNE3-212ENST00000621783 AEBP2Q6ZN18 517 aaPredicted RBP20.5■□□□□ 0.87
CPNE3-212ENST00000621783 DCAF8L2P0C7V8 631 aa20.39■□□□□ 0.85
CPNE3-212ENST00000621783 MYO15BQ96JP2 1530 aa20.38■□□□□ 0.85
CPNE3-212ENST00000621783 NACADO15069 1562 aa20.32■□□□□ 0.84
CPNE3-212ENST00000621783 RB1CC1Q8TDY2 1594 aa20.2■□□□□ 0.82
CPNE3-212ENST00000621783 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
CPNE3-212ENST00000621783 SCRIBQ14160 1630 aa19.98■□□□□ 0.79
CPNE3-212ENST00000621783 UNC13AQ9UPW8 1703 aa19.81■□□□□ 0.76
CPNE3-212ENST00000621783 BICRAQ9NZM4 1560 aa19.6■□□□□ 0.73
CPNE3-212ENST00000621783 PABPN1Q86U42 306 aaKnown RBP eCLIP19.43■□□□□ 0.7
CPNE3-212ENST00000621783 CECR2Q9BXF3 1484 aa19.27■□□□□ 0.67
CPNE3-212ENST00000621783 CHIC1Q5VXU3 224 aa19.19■□□□□ 0.66
CPNE3-212ENST00000621783 BAZ1AQ9NRL2 1556 aaPredicted RBP19.19■□□□□ 0.66
CPNE3-212ENST00000621783 MROH2BQ7Z745 1585 aa19.15■□□□□ 0.66
CPNE3-212ENST00000621783 SMARCA4P51532 1647 aa19.15■□□□□ 0.66
CPNE3-212ENST00000621783 RSF1Q96T23 1441 aaPredicted RBP19.13■□□□□ 0.65
CPNE3-212ENST00000621783 SUPT5HO00267 1087 aaKnown RBP19.08■□□□□ 0.64
CPNE3-212ENST00000621783 EIF4G1Q04637 1599 aaKnown RBP19.02■□□□□ 0.64
CPNE3-212ENST00000621783 WIZO95785 1651 aa18.99■□□□□ 0.63
CPNE3-212ENST00000621783 PEG3Q9GZU2 1588 aa18.93■□□□□ 0.62
CPNE3-212ENST00000621783 SMARCA2P51531 1590 aa18.86■□□□□ 0.61
CPNE3-212ENST00000621783 ATAD2BQ9ULI0 1458 aa18.85■□□□□ 0.61
CPNE3-212ENST00000621783 TOP2AP11388 1531 aaKnown RBP18.83■□□□□ 0.6
CPNE3-212ENST00000621783 CC2D2AQ9P2K1 1620 aa18.79■□□□□ 0.6
CPNE3-212ENST00000621783 BAZ1BQ9UIG0 1483 aaKnown RBP18.74■□□□□ 0.59
CPNE3-212ENST00000621783 HMGXB3Q12766 1538 aa18.74■□□□□ 0.59
CPNE3-212ENST00000621783 NCAPD3P42695 1498 aa18.71■□□□□ 0.59
CPNE3-212ENST00000621783 CCDC88BA6NC98 1476 aa18.57■□□□□ 0.56
CPNE3-212ENST00000621783 DNAJC5BQ9UF47 199 aa18.41■□□□□ 0.54
CPNE3-212ENST00000621783 CFTRP13569 1480 aa18.25■□□□□ 0.51
CPNE3-212ENST00000621783 PRDM2Q13029 1718 aa18.23■□□□□ 0.51
CPNE3-212ENST00000621783 CADPSQ9ULU8 1353 aa18.19■□□□□ 0.5
CPNE3-212ENST00000621783 LAMC3Q9Y6N6 1575 aa18.16■□□□□ 0.5
CPNE3-212ENST00000621783 NESP48681 1621 aa18.13■□□□□ 0.49
CPNE3-212ENST00000621783 ABCC8Q09428 1581 aa18.13■□□□□ 0.49
CPNE3-212ENST00000621783 FANCD2Q9BXW9 1451 aa18.03■□□□□ 0.48
CPNE3-212ENST00000621783 WRNQ14191 1432 aaPredicted RBP eCLIP18.02■□□□□ 0.48
CPNE3-212ENST00000621783 SYNJ1O43426 1573 aa18■□□□□ 0.47
CPNE3-212ENST00000621783 KIF21AQ7Z4S6 1674 aa17.97■□□□□ 0.47
CPNE3-212ENST00000621783 PDS5BQ9NTI5 1447 aa17.97■□□□□ 0.47
CPNE3-212ENST00000621783 CEP164Q9UPV0 1460 aa17.96■□□□□ 0.47
CPNE3-212ENST00000621783 TRIM41Q8WV44 630 aa17.96■□□□□ 0.47
CPNE3-212ENST00000621783 BIVM-ERCC5R4GMW8 1640 aa17.95■□□□□ 0.46
CPNE3-212ENST00000621783 TOP2BQ02880 1626 aa17.94■□□□□ 0.46
CPNE3-212ENST00000621783 CUX1P39880 1505 aa17.93■□□□□ 0.46
CPNE3-212ENST00000621783 DNMBPQ6XZF7 1577 aa17.87■□□□□ 0.45
CPNE3-212ENST00000621783 URB2Q14146 1524 aaKnown RBP17.83■□□□□ 0.45
CPNE3-212ENST00000621783 TOPBP1Q92547 1522 aa17.82■□□□□ 0.44
CPNE3-212ENST00000621783 ERCC6Q03468 1493 aa17.81■□□□□ 0.44
CPNE3-212ENST00000621783 MRC2Q9UBG0 1479 aa17.81■□□□□ 0.44
CPNE3-212ENST00000621783 FGD5Q6ZNL6 1462 aa17.77■□□□□ 0.44
CPNE3-212ENST00000621783 THOC2Q8NI27 1593 aaKnown RBP17.76■□□□□ 0.43
CPNE3-212ENST00000621783 WDR62O43379 1518 aa17.74■□□□□ 0.43
CPNE3-212ENST00000621783 POLA1P09884 1462 aaPredicted RBP17.71■□□□□ 0.43
CPNE3-212ENST00000621783 SOGA1O94964 1423 aa17.7■□□□□ 0.42
CPNE3-212ENST00000621783 EEA1Q15075 1411 aa17.65■□□□□ 0.42
CPNE3-212ENST00000621783 RUSC2Q8N2Y8 1516 aa17.65■□□□□ 0.42
CPNE3-212ENST00000621783 WDR97A6NE52 1622 aa17.65■□□□□ 0.42
CPNE3-212ENST00000621783 RAD54L2Q9Y4B4 1467 aa17.63■□□□□ 0.41
CPNE3-212ENST00000621783 FAM9AQ8IZU1 332 aaPredicted RBP17.62■□□□□ 0.41
CPNE3-212ENST00000621783 ABCA10Q8WWZ4 1543 aa17.61■□□□□ 0.41
CPNE3-212ENST00000621783 CUX2O14529 1486 aa17.6■□□□□ 0.41
CPNE3-212ENST00000621783 TARBP1Q13395 1621 aaKnown RBP17.6■□□□□ 0.41
CPNE3-212ENST00000621783 KIF27Q86VH2 1401 aa17.58■□□□□ 0.41
CPNE3-212ENST00000621783 IFT140Q96RY7 1462 aa17.54■□□□□ 0.4
CPNE3-212ENST00000621783 ABCA5Q8WWZ7 1642 aa17.53■□□□□ 0.4
CPNE3-212ENST00000621783 SENP3Q9H4L4 574 aaPredicted RBP17.51■□□□□ 0.39
CPNE3-212ENST00000621783 CSRNP3Q8WYN3 585 aa17.49■□□□□ 0.39
CPNE3-212ENST00000621783 KIF21BO75037 1637 aa17.48■□□□□ 0.39
CPNE3-212ENST00000621783 TDRD9Q8NDG6 1382 aaKnown RBP17.44■□□□□ 0.38
CPNE3-212ENST00000621783 GAPVD1Q14C86 1478 aa17.44■□□□□ 0.38
CPNE3-212ENST00000621783 ZNF608Q9ULD9 1512 aaPredicted RBP17.43■□□□□ 0.38
CPNE3-212ENST00000621783 PBRM1Q86U86 1689 aa17.43■□□□□ 0.38
CPNE3-212ENST00000621783 EIF4G3O43432 1585 aaKnown RBP17.43■□□□□ 0.38
CPNE3-212ENST00000621783 LOC105371045A0A1W2PR82 267 aa17.42■□□□□ 0.38
CPNE3-212ENST00000621783 PRXQ9BXM0 1461 aa17.42■□□□□ 0.38
CPNE3-212ENST00000621783 GOLGA3Q08378 1498 aa17.41■□□□□ 0.38
CPNE3-212ENST00000621783 ERICH3Q5RHP9 1530 aa17.41■□□□□ 0.38
CPNE3-212ENST00000621783 IGF1RP08069 1367 aa17.4■□□□□ 0.38
CPNE3-212ENST00000621783 CUL7Q14999 1698 aa17.4■□□□□ 0.38
CPNE3-212ENST00000621783 AQRO60306 1485 aaKnown RBP eCLIP17.38■□□□□ 0.376e-8■■■■■ 35.8
CPNE3-212ENST00000621783 RAPGEF2Q9Y4G8 1499 aa17.37■□□□□ 0.37
CPNE3-212ENST00000621783 EHMT2Q96KQ7 1210 aa17.36■□□□□ 0.37
CPNE3-212ENST00000621783 GRIN2BQ13224 1484 aa17.35■□□□□ 0.37
CPNE3-212ENST00000621783 ADAMTS12P58397 1594 aa17.32■□□□□ 0.36
CPNE3-212ENST00000621783 CARMIL1Q5VZK9 1371 aa17.32■□□□□ 0.36
CPNE3-212ENST00000621783 SNAPC4Q5SXM2 1469 aa17.28■□□□□ 0.36
CPNE3-212ENST00000621783 TNIKQ9UKE5 1360 aa17.27■□□□□ 0.35
CPNE3-212ENST00000621783 FHAD1B1AJZ9 1412 aa17.25■□□□□ 0.35
CPNE3-212ENST00000621783 PHF23Q9BUL5 403 aaPredicted RBP17.25■□□□□ 0.35
CPNE3-212ENST00000621783 MAGI1Q96QZ7 1491 aaPredicted RBP17.24■□□□□ 0.35
CPNE3-212ENST00000621783 UBTFP17480 764 aaKnown RBP17.23■□□□□ 0.35
CPNE3-212ENST00000621783 CTTNBP2Q8WZ74 1663 aa17.19■□□□□ 0.34
CPNE3-212ENST00000621783 CEP162Q5TB80 1403 aa17.18■□□□□ 0.34
CPNE3-212ENST00000621783 SYNJ2O15056 1496 aa17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms