RNA–Protein interactions for RNA: ENST00000620393.4

CPNE3-209, Transcript of copine 3, humanhuman

TSL 5

Gene CPNE3, Length 680 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-209ENST00000620393 AEBP2Q6ZN18 517 aaPredicted RBP19.89■□□□□ 0.77
CPNE3-209ENST00000620393 CHIC1Q5VXU3 224 aa19.09■□□□□ 0.65
CPNE3-209ENST00000620393 NISCHQ9Y2I1 1504 aa18.61■□□□□ 0.57
CPNE3-209ENST00000620393 SENP3Q9H4L4 574 aaPredicted RBP17.02■□□□□ 0.32
CPNE3-209ENST00000620393 PHF23Q9BUL5 403 aaPredicted RBP16.82■□□□□ 0.28
CPNE3-209ENST00000620393 POTEDQ86YR6 584 aa16.36■□□□□ 0.21
CPNE3-209ENST00000620393 CCDC180Q9P1Z9 1646 aa16.23■□□□□ 0.19
CPNE3-209ENST00000620393 FOXD1Q16676 465 aa15.8■□□□□ 0.12
CPNE3-209ENST00000620393 ABCC9O60706 1549 aa15.68■□□□□ 0.1
CPNE3-209ENST00000620393 ZCCHC6Q5VYS8 1495 aaKnown RBP15.54■□□□□ 0.08
CPNE3-209ENST00000620393 DCAF8L2P0C7V8 631 aa15.54■□□□□ 0.08
CPNE3-209ENST00000620393 DCAF1Q9Y4B6 1507 aa15.39■□□□□ 0.05
CPNE3-209ENST00000620393 PLPPR3Q6T4P5 718 aa15.37■□□□□ 0.05
CPNE3-209ENST00000620393 MYO15BQ96JP2 1530 aa15.33■□□□□ 0.04
CPNE3-209ENST00000620393 NACADO15069 1562 aa15.28■□□□□ 0.04
CPNE3-209ENST00000620393 RB1CC1Q8TDY2 1594 aa15.18■□□□□ 0.02
CPNE3-209ENST00000620393 SHROOM4Q9ULL8 1493 aa14.99□□□□□ -0.01
CPNE3-209ENST00000620393 PPP6R1Q9UPN7 881 aa14.9□□□□□ -0.02
CPNE3-209ENST00000620393 SCRIBQ14160 1630 aa14.89□□□□□ -0.03
CPNE3-209ENST00000620393 ADRA2BP18089 450 aa14.88□□□□□ -0.03
CPNE3-209ENST00000620393 PIAS4Q8N2W9 510 aaPredicted RBP14.83□□□□□ -0.04
CPNE3-209ENST00000620393 PABPN1Q86U42 306 aaKnown RBP eCLIP14.81□□□□□ -0.04
CPNE3-209ENST00000620393 MSH5O43196 834 aa14.78□□□□□ -0.04
CPNE3-209ENST00000620393 BICRAQ9NZM4 1560 aa14.71□□□□□ -0.05
CPNE3-209ENST00000620393 UNC13AQ9UPW8 1703 aa14.69□□□□□ -0.06
CPNE3-209ENST00000620393 CECR2Q9BXF3 1484 aa14.49□□□□□ -0.09
CPNE3-209ENST00000620393 RSF1Q96T23 1441 aaPredicted RBP14.37□□□□□ -0.11
CPNE3-209ENST00000620393 BAZ1AQ9NRL2 1556 aaPredicted RBP14.36□□□□□ -0.11
CPNE3-209ENST00000620393 SUPT5HO00267 1087 aaKnown RBP14.36□□□□□ -0.11
CPNE3-209ENST00000620393 MROH2BQ7Z745 1585 aa14.34□□□□□ -0.11
CPNE3-209ENST00000620393 EIF4G1Q04637 1599 aaKnown RBP14.3□□□□□ -0.12
CPNE3-209ENST00000620393 SMARCA4P51532 1647 aa14.29□□□□□ -0.12
CPNE3-209ENST00000620393 ATAD2BQ9ULI0 1458 aa14.21□□□□□ -0.13
CPNE3-209ENST00000620393 DNAJC5BQ9UF47 199 aa14.17□□□□□ -0.14
CPNE3-209ENST00000620393 NCAPD3P42695 1498 aa14.17□□□□□ -0.14
CPNE3-209ENST00000620393 SMARCA2P51531 1590 aa14.16□□□□□ -0.14
CPNE3-209ENST00000620393 PEG3Q9GZU2 1588 aa14.16□□□□□ -0.14
CPNE3-209ENST00000620393 WIZO95785 1651 aa14.15□□□□□ -0.14
CPNE3-209ENST00000620393 CC2D2AQ9P2K1 1620 aa14.13□□□□□ -0.15
CPNE3-209ENST00000620393 BAZ1BQ9UIG0 1483 aaKnown RBP14.07□□□□□ -0.16
CPNE3-209ENST00000620393 TOP2AP11388 1531 aaKnown RBP14.04□□□□□ -0.16
CPNE3-209ENST00000620393 HMGXB3Q12766 1538 aa14.03□□□□□ -0.16
CPNE3-209ENST00000620393 CCDC88BA6NC98 1476 aa13.95□□□□□ -0.18
CPNE3-209ENST00000620393 CADPSQ9ULU8 1353 aa13.8□□□□□ -0.2
CPNE3-209ENST00000620393 CFTRP13569 1480 aa13.75□□□□□ -0.21
CPNE3-209ENST00000620393 SCAF1Q9H7N4 1312 aaKnown RBP13.7□□□□□ -0.22
CPNE3-209ENST00000620393 NESP48681 1621 aa13.67□□□□□ -0.22
CPNE3-209ENST00000620393 LAMC3Q9Y6N6 1575 aa13.63□□□□□ -0.23
CPNE3-209ENST00000620393 PDS5BQ9NTI5 1447 aa13.63□□□□□ -0.23
CPNE3-209ENST00000620393 MAPK8IP2Q13387 824 aaPredicted RBP13.62□□□□□ -0.23
CPNE3-209ENST00000620393 FANCD2Q9BXW9 1451 aa13.58□□□□□ -0.24
CPNE3-209ENST00000620393 TRIM41Q8WV44 630 aa13.55□□□□□ -0.24
CPNE3-209ENST00000620393 WRNQ14191 1432 aaPredicted RBP eCLIP13.52□□□□□ -0.25
CPNE3-209ENST00000620393 CEP164Q9UPV0 1460 aa13.5□□□□□ -0.25
CPNE3-209ENST00000620393 DMRT2Q9Y5R5 561 aa13.5□□□□□ -0.25
CPNE3-209ENST00000620393 ABCC8Q09428 1581 aa13.48□□□□□ -0.25
CPNE3-209ENST00000620393 PPP4R3CPQ6ZMV5 832 aa13.47□□□□□ -0.25
CPNE3-209ENST00000620393 ERCC6Q03468 1493 aa13.47□□□□□ -0.25
CPNE3-209ENST00000620393 PRDM2Q13029 1718 aa13.44□□□□□ -0.26
CPNE3-209ENST00000620393 CUX1P39880 1505 aa13.42□□□□□ -0.26
CPNE3-209ENST00000620393 MRC2Q9UBG0 1479 aa13.41□□□□□ -0.26
CPNE3-209ENST00000620393 URB2Q14146 1524 aaKnown RBP13.4□□□□□ -0.26
CPNE3-209ENST00000620393 TOPBP1Q92547 1522 aa13.39□□□□□ -0.27
CPNE3-209ENST00000620393 SYNJ1O43426 1573 aa13.38□□□□□ -0.27
CPNE3-209ENST00000620393 KIF21AQ7Z4S6 1674 aa13.37□□□□□ -0.27
CPNE3-209ENST00000620393 TOP2BQ02880 1626 aa13.37□□□□□ -0.27
CPNE3-209ENST00000620393 DNMBPQ6XZF7 1577 aa13.37□□□□□ -0.27
CPNE3-209ENST00000620393 SOGA1O94964 1423 aa13.32□□□□□ -0.28
CPNE3-209ENST00000620393 FGD5Q6ZNL6 1462 aa13.32□□□□□ -0.28
CPNE3-209ENST00000620393 WDR62O43379 1518 aa13.32□□□□□ -0.28
CPNE3-209ENST00000620393 BIVM-ERCC5R4GMW8 1640 aa13.31□□□□□ -0.28
CPNE3-209ENST00000620393 CACNB1Q02641 598 aaPredicted RBP13.31□□□□□ -0.28
CPNE3-209ENST00000620393 POLA1P09884 1462 aaPredicted RBP13.3□□□□□ -0.28
CPNE3-209ENST00000620393 RAD54L2Q9Y4B4 1467 aa13.28□□□□□ -0.28
CPNE3-209ENST00000620393 THOC2Q8NI27 1593 aaKnown RBP13.28□□□□□ -0.28
CPNE3-209ENST00000620393 CUX2O14529 1486 aa13.26□□□□□ -0.29
CPNE3-209ENST00000620393 FAM9AQ8IZU1 332 aaPredicted RBP13.26□□□□□ -0.29
CPNE3-209ENST00000620393 CSRNP3Q8WYN3 585 aa13.23□□□□□ -0.29
CPNE3-209ENST00000620393 ABCA10Q8WWZ4 1543 aa13.23□□□□□ -0.29
CPNE3-209ENST00000620393 IFT140Q96RY7 1462 aa13.23□□□□□ -0.29
CPNE3-209ENST00000620393 KIF27Q86VH2 1401 aa13.22□□□□□ -0.29
CPNE3-209ENST00000620393 RUSC2Q8N2Y8 1516 aa13.22□□□□□ -0.29
CPNE3-209ENST00000620393 TDRD9Q8NDG6 1382 aaKnown RBP13.21□□□□□ -0.29
CPNE3-209ENST00000620393 EEA1Q15075 1411 aa13.21□□□□□ -0.3
CPNE3-209ENST00000620393 CNKSR2Q8WXI2 1034 aa13.2□□□□□ -0.3
CPNE3-209ENST00000620393 IGF1RP08069 1367 aa13.18□□□□□ -0.3
CPNE3-209ENST00000620393 TARBP1Q13395 1621 aaKnown RBP13.17□□□□□ -0.3
CPNE3-209ENST00000620393 AQRO60306 1485 aaKnown RBP eCLIP13.16□□□□□ -0.36e-8■■■■■ 35.8
CPNE3-209ENST00000620393 GAPVD1Q14C86 1478 aa13.14□□□□□ -0.31
CPNE3-209ENST00000620393 ZNF608Q9ULD9 1512 aaPredicted RBP13.13□□□□□ -0.31
CPNE3-209ENST00000620393 LOC105371045A0A1W2PR82 267 aa13.11□□□□□ -0.31
CPNE3-209ENST00000620393 CARMIL1Q5VZK9 1371 aa13.08□□□□□ -0.31
CPNE3-209ENST00000620393 GRIN2BQ13224 1484 aa13.08□□□□□ -0.32
CPNE3-209ENST00000620393 NCBP3Q53F19 620 aaKnown RBP13.07□□□□□ -0.32
CPNE3-209ENST00000620393 PRXQ9BXM0 1461 aa13.06□□□□□ -0.32
CPNE3-209ENST00000620393 HOXD11P31277 338 aaPredicted RBP13.06□□□□□ -0.32
CPNE3-209ENST00000620393 WDR97A6NE52 1622 aa13.06□□□□□ -0.32
CPNE3-209ENST00000620393 ABCA5Q8WWZ7 1642 aa13.05□□□□□ -0.32
CPNE3-209ENST00000620393 ERICH3Q5RHP9 1530 aa13.04□□□□□ -0.32
CPNE3-209ENST00000620393 EHMT2Q96KQ7 1210 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms