Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
USP48Q86UV5 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC26.76■■□□□ 1.87
USP48Q86UV5 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC26.76■■□□□ 1.87
USP48Q86UV5 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC26.76■■□□□ 1.87
USP48Q86UV5 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC26.75■■□□□ 1.87
USP48Q86UV5 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC26.75■■□□□ 1.87
USP48Q86UV5 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.75■■□□□ 1.87
USP48Q86UV5 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC26.75■■□□□ 1.87
USP48Q86UV5 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 AC026185.1-201ENST00000445748 174 ntBASIC26.75■■□□□ 1.87
USP48Q86UV5 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC26.75■■□□□ 1.87
USP48Q86UV5 AC105233.4-201ENST00000642045 216 ntBASIC26.75■■□□□ 1.87
USP48Q86UV5 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC26.75■■□□□ 1.87
USP48Q86UV5 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC26.75■■□□□ 1.87
USP48Q86UV5 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC26.75■■□□□ 1.87
USP48Q86UV5 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC26.74■■□□□ 1.87
USP48Q86UV5 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.74■■□□□ 1.87
USP48Q86UV5 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP48Q86UV5 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC26.74■■□□□ 1.87
USP48Q86UV5 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC26.74■■□□□ 1.87
USP48Q86UV5 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC26.74■■□□□ 1.87
USP48Q86UV5 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC26.74■■□□□ 1.87
USP48Q86UV5 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC26.74■■□□□ 1.87
USP48Q86UV5 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC26.74■■□□□ 1.87
USP48Q86UV5 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC26.73■■□□□ 1.87
USP48Q86UV5 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP48Q86UV5 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP48Q86UV5 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC26.73■■□□□ 1.87
USP48Q86UV5 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC26.73■■□□□ 1.87
USP48Q86UV5 GALNS-213ENST00000569433 723 ntTSL 3 BASIC26.73■■□□□ 1.87
USP48Q86UV5 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC26.73■■□□□ 1.87
USP48Q86UV5 TMEM191A-211ENST00000637163 1067 ntBASIC26.73■■□□□ 1.87
USP48Q86UV5 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP48Q86UV5 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP48Q86UV5 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.73■■□□□ 1.87
USP48Q86UV5 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP48Q86UV5 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP48Q86UV5 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP48Q86UV5 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC26.72■■□□□ 1.87
USP48Q86UV5 STX7-201ENST00000367937 1090 ntTSL 5 BASIC26.72■■□□□ 1.87
USP48Q86UV5 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC26.72■■□□□ 1.87
USP48Q86UV5 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC26.72■■□□□ 1.87
USP48Q86UV5 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP48Q86UV5 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP48Q86UV5 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC26.72■■□□□ 1.87
USP48Q86UV5 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC26.72■■□□□ 1.87
USP48Q86UV5 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC26.71■■□□□ 1.87
USP48Q86UV5 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 AL355802.2-201ENST00000402069 882 ntBASIC26.71■■□□□ 1.87
USP48Q86UV5 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC26.71■■□□□ 1.87
USP48Q86UV5 AL499627.2-201ENST00000606283 725 ntBASIC26.71■■□□□ 1.87
USP48Q86UV5 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC26.71■■□□□ 1.87
USP48Q86UV5 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC26.7■■□□□ 1.87
USP48Q86UV5 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC26.7■■□□□ 1.87
USP48Q86UV5 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC26.7■■□□□ 1.87
USP48Q86UV5 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.7■■□□□ 1.86
USP48Q86UV5 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
USP48Q86UV5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC26.7■■□□□ 1.86
USP48Q86UV5 OR2I1P-207ENST00000453522 948 ntBASIC26.7■■□□□ 1.86
USP48Q86UV5 DBI-210ENST00000542275 757 ntTSL 5 BASIC26.7■■□□□ 1.86
USP48Q86UV5 AL109923.1-201ENST00000618799 583 ntBASIC26.7■■□□□ 1.86
USP48Q86UV5 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC26.7■■□□□ 1.86
USP48Q86UV5 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC26.7■■□□□ 1.86
USP48Q86UV5 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC26.7■■□□□ 1.86
USP48Q86UV5 GAS2L1P2-201ENST00000436355 1356 ntBASIC26.7■■□□□ 1.86
USP48Q86UV5 ALDH1A3-203ENST00000557963 1670 ntBASIC26.7■■□□□ 1.86
USP48Q86UV5 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC26.69■■□□□ 1.86
USP48Q86UV5 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC26.69■■□□□ 1.86
USP48Q86UV5 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC26.69■■□□□ 1.86
USP48Q86UV5 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.86
USP48Q86UV5 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.69■■□□□ 1.86
USP48Q86UV5 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC26.69■■□□□ 1.86
USP48Q86UV5 HSCB-202ENST00000398941 955 ntTSL 2 BASIC26.69■■□□□ 1.86
USP48Q86UV5 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC26.69■■□□□ 1.86
USP48Q86UV5 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC26.69■■□□□ 1.86
USP48Q86UV5 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.69■■□□□ 1.86
USP48Q86UV5 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC26.69■■□□□ 1.86
USP48Q86UV5 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC26.69■■□□□ 1.86
USP48Q86UV5 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP48Q86UV5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP48Q86UV5 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC26.68■■□□□ 1.86
USP48Q86UV5 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC26.68■■□□□ 1.86
USP48Q86UV5 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
USP48Q86UV5 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC26.68■■□□□ 1.86
USP48Q86UV5 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
USP48Q86UV5 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.68■■□□□ 1.86
USP48Q86UV5 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.68■■□□□ 1.86
USP48Q86UV5 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.68■■□□□ 1.86
USP48Q86UV5 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.68■■□□□ 1.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms