RNA–Protein interactions for RNA: ENST00000630951.1

RAB28-208, Transcript of RAB28, member RAS oncogene family, humanhuman

TSL 5 BASIC

Gene RAB28, Length 1,679 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAB28-208ENST00000630951 NISCHQ9Y2I1 1504 aa52.44■■■■■ 5.99
RAB28-208ENST00000630951 CCDC180Q9P1Z9 1646 aa46.73■■■■■ 5.07
RAB28-208ENST00000630951 ABCC9O60706 1549 aa46.03■■■■■ 4.96
RAB28-208ENST00000630951 RB1CC1Q8TDY2 1594 aa44.16■■■■■ 4.66
RAB28-208ENST00000630951 NACADO15069 1562 aa44.06■■■■■ 4.64
RAB28-208ENST00000630951 DCAF8L2P0C7V8 631 aa43.95■■■■■ 4.63
RAB28-208ENST00000630951 MYO15BQ96JP2 1530 aa43.73■■■■■ 4.59
RAB28-208ENST00000630951 ZCCHC6Q5VYS8 1495 aaKnown RBP43.6■■■■■ 4.57
RAB28-208ENST00000630951 DCAF1Q9Y4B6 1507 aa43.4■■■■■ 4.54
RAB28-208ENST00000630951 UNC13AQ9UPW8 1703 aa43.08■■■■■ 4.49
RAB28-208ENST00000630951 PABPN1Q86U42 306 aaKnown RBP eCLIP42.99■■■■■ 4.47
RAB28-208ENST00000630951 BICRAQ9NZM4 1560 aa42.82■■■■■ 4.45
RAB28-208ENST00000630951 DNAJC5BQ9UF47 199 aa42.6■■■■■ 4.41
RAB28-208ENST00000630951 SCRIBQ14160 1630 aa42.57■■■■■ 4.41
RAB28-208ENST00000630951 SHROOM4Q9ULL8 1493 aa42.41■■■■■ 4.38
RAB28-208ENST00000630951 EIF4G1Q04637 1599 aaKnown RBP41.73■■■■■ 4.27
RAB28-208ENST00000630951 CC2D2AQ9P2K1 1620 aa41.63■■■■■ 4.25
RAB28-208ENST00000630951 CECR2Q9BXF3 1484 aa41.43■■■■■ 4.22
RAB28-208ENST00000630951 SMARCA4P51532 1647 aa40.73■■■■■ 4.11
RAB28-208ENST00000630951 NCAPD3P42695 1498 aa40.68■■■■■ 4.1
RAB28-208ENST00000630951 BAZ1AQ9NRL2 1556 aaPredicted RBP40.66■■■■■ 4.1
RAB28-208ENST00000630951 ATAD2BQ9ULI0 1458 aa40.63■■■■■ 4.09
RAB28-208ENST00000630951 SMARCA2P51531 1590 aa40.56■■■■■ 4.08
RAB28-208ENST00000630951 HMGXB3Q12766 1538 aa40.41■■■■■ 4.06
RAB28-208ENST00000630951 MROH2BQ7Z745 1585 aa40.38■■■■■ 4.05
RAB28-208ENST00000630951 PEG3Q9GZU2 1588 aa40.37■■■■■ 4.05
RAB28-208ENST00000630951 BAZ1BQ9UIG0 1483 aaKnown RBP40.26■■■■■ 4.04
RAB28-208ENST00000630951 WIZO95785 1651 aa39.9■■■■□ 3.98
RAB28-208ENST00000630951 RSF1Q96T23 1441 aaPredicted RBP39.84■■■■□ 3.97
RAB28-208ENST00000630951 NESP48681 1621 aa39.73■■■■□ 3.95
RAB28-208ENST00000630951 ERCC6Q03468 1493 aa39.72■■■■□ 3.95
RAB28-208ENST00000630951 LAMC3Q9Y6N6 1575 aa39.62■■■■□ 3.93
RAB28-208ENST00000630951 TOP2AP11388 1531 aaKnown RBP39.49■■■■□ 3.91
RAB28-208ENST00000630951 CADPSQ9ULU8 1353 aa39.48■■■■□ 3.91
RAB28-208ENST00000630951 CUX2O14529 1486 aa39.45■■■■□ 3.91
RAB28-208ENST00000630951 PDS5BQ9NTI5 1447 aa39.41■■■■□ 3.9
RAB28-208ENST00000630951 KIF21AQ7Z4S6 1674 aa39.21■■■■□ 3.87
RAB28-208ENST00000630951 THOC2Q8NI27 1593 aaKnown RBP39.19■■■■□ 3.86
RAB28-208ENST00000630951 CFTRP13569 1480 aa39.17■■■■□ 3.86
RAB28-208ENST00000630951 CCDC88BA6NC98 1476 aa39.04■■■■□ 3.84
RAB28-208ENST00000630951 FANCD2Q9BXW9 1451 aa38.99■■■■□ 3.83
RAB28-208ENST00000630951 MRC2Q9UBG0 1479 aa38.98■■■■□ 3.83
RAB28-208ENST00000630951 CEP164Q9UPV0 1460 aa38.97■■■■□ 3.83
RAB28-208ENST00000630951 WDR62O43379 1518 aa38.86■■■■□ 3.81
RAB28-208ENST00000630951 PRDM2Q13029 1718 aa38.74■■■■□ 3.79
RAB28-208ENST00000630951 DNAJC5Q9H3Z4 198 aa38.66■■■■□ 3.78
RAB28-208ENST00000630951 URB2Q14146 1524 aaKnown RBP38.6■■■■□ 3.77
RAB28-208ENST00000630951 SUPT5HO00267 1087 aaKnown RBP38.56■■■■□ 3.76
RAB28-208ENST00000630951 ABCC8Q09428 1581 aa38.35■■■■□ 3.73
RAB28-208ENST00000630951 TOPBP1Q92547 1522 aa38.32■■■■□ 3.73
RAB28-208ENST00000630951 DNMBPQ6XZF7 1577 aa38.24■■■■□ 3.71
RAB28-208ENST00000630951 IFT140Q96RY7 1462 aa38.18■■■■□ 3.7
RAB28-208ENST00000630951 ZNF608Q9ULD9 1512 aaPredicted RBP38.01■■■■□ 3.67
RAB28-208ENST00000630951 POLA1P09884 1462 aaPredicted RBP37.98■■■■□ 3.67
RAB28-208ENST00000630951 TARBP1Q13395 1621 aaKnown RBP37.92■■■■□ 3.66
RAB28-208ENST00000630951 CUX1P39880 1505 aa37.9■■■■□ 3.66
RAB28-208ENST00000630951 SOGA1O94964 1423 aa37.84■■■■□ 3.65
RAB28-208ENST00000630951 FGD5Q6ZNL6 1462 aa37.83■■■■□ 3.65
RAB28-208ENST00000630951 EIF4G3O43432 1585 aaKnown RBP37.82■■■■□ 3.64
RAB28-208ENST00000630951 RAD54L2Q9Y4B4 1467 aa37.81■■■■□ 3.64
RAB28-208ENST00000630951 OSCARQ8IYS5 282 aa37.8■■■■□ 3.64
RAB28-208ENST00000630951 AQRO60306 1485 aaKnown RBP eCLIP37.77■■■■□ 3.64
RAB28-208ENST00000630951 TDRD9Q8NDG6 1382 aaKnown RBP37.66■■■■□ 3.62
RAB28-208ENST00000630951 WDR97A6NE52 1622 aa37.63■■■■□ 3.61
RAB28-208ENST00000630951 WRNQ14191 1432 aaPredicted RBP eCLIP37.57■■■■□ 3.6
RAB28-208ENST00000630951 TOP2BQ02880 1626 aa37.5■■■■□ 3.59
RAB28-208ENST00000630951 ABCA10Q8WWZ4 1543 aa37.47■■■■□ 3.59
RAB28-208ENST00000630951 BIVM-ERCC5R4GMW8 1640 aa37.47■■■■□ 3.59
RAB28-208ENST00000630951 SYNJ1O43426 1573 aa37.44■■■■□ 3.58
RAB28-208ENST00000630951 GRIN2BQ13224 1484 aa37.43■■■■□ 3.58
RAB28-208ENST00000630951 GAPVD1Q14C86 1478 aa37.39■■■■□ 3.58
RAB28-208ENST00000630951 SNAPC4Q5SXM2 1469 aa37.39■■■■□ 3.58
RAB28-208ENST00000630951 FBLN2P98095 1184 aa37.39■■■■□ 3.58
RAB28-208ENST00000630951 CHD1O14646 1710 aa37.38■■■■□ 3.57
RAB28-208ENST00000630951 MAGI1Q96QZ7 1491 aaPredicted RBP37.37■■■■□ 3.57
RAB28-208ENST00000630951 ABCA5Q8WWZ7 1642 aa37.31■■■■□ 3.56
RAB28-208ENST00000630951 CHMP7Q8WUX9 453 aaPredicted RBP37.27■■■■□ 3.56
RAB28-208ENST00000630951 PBRM1Q86U86 1689 aa37.25■■■■□ 3.55
RAB28-208ENST00000630951 SYNJ2O15056 1496 aa37.23■■■■□ 3.55
RAB28-208ENST00000630951 TRIM41Q8WV44 630 aa37.18■■■■□ 3.54
RAB28-208ENST00000630951 RIMBP3CA6NJZ7 1639 aa37.13■■■■□ 3.53
RAB28-208ENST00000630951 RIMBP3BA6NNM3 1639 aa37.13■■■■□ 3.53
RAB28-208ENST00000630951 RIMBP3Q9UFD9 1639 aa37.13■■■■□ 3.53
RAB28-208ENST00000630951 ARHGEF11O15085 1522 aa37.12■■■■□ 3.53
RAB28-208ENST00000630951 ERICH3Q5RHP9 1530 aa37.02■■■■□ 3.52
RAB28-208ENST00000630951 CLASP1Q7Z460 1538 aa37.02■■■■□ 3.52
RAB28-208ENST00000630951 ADAMTS12P58397 1594 aa36.97■■■■□ 3.51
RAB28-208ENST00000630951 FHAD1B1AJZ9 1412 aa36.95■■■■□ 3.51
RAB28-208ENST00000630951 GRIN2AQ12879 1464 aa36.94■■■■□ 3.5
RAB28-208ENST00000630951 CYB5RLQ6IPT4 315 aa36.83■■■■□ 3.49
RAB28-208ENST00000630951 KIF27Q86VH2 1401 aa36.83■■■■□ 3.49
RAB28-208ENST00000630951 NUP160Q12769 1436 aa36.8■■■■□ 3.48
RAB28-208ENST00000630951 ARAP1Q96P48 1450 aa36.79■■■■□ 3.48
RAB28-208ENST00000630951 CEP170Q5SW79 1584 aa36.73■■■■□ 3.47
RAB28-208ENST00000630951 IGF1RP08069 1367 aa36.73■■■■□ 3.47
RAB28-208ENST00000630951 CUL7Q14999 1698 aa36.58■■■■□ 3.45
RAB28-208ENST00000630951 SHROOM2Q13796 1616 aa36.53■■■■□ 3.44
RAB28-208ENST00000630951 CARMIL1Q5VZK9 1371 aa36.49■■■■□ 3.43
RAB28-208ENST00000630951 JPH4Q96JJ6 628 aa36.46■■■■□ 3.43
RAB28-208ENST00000630951 ERCC6L2Q5T890 1561 aa36.45■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms