Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 HPS1-213ENST00000497527 536 ntTSL 311.05□□□□□ -0.647e-6■■■■□ 20.7
SMNDC1O75940 ZNF800-204ENST00000434602 955 ntTSL 510.93□□□□□ -0.667e-6■■■■□ 20.7
SMNDC1O75940 ZNF800-202ENST00000393312 2375 ntAPPRIS P1 TSL 5 BASIC10.66□□□□□ -0.77e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-236ENST00000636471 9583 ntTSL 5 BASIC10.64□□□□□ -0.717e-6■■■■□ 20.7
SMNDC1O75940 CLPTM1L-205ENST00000505605 386 ntTSL 210.58□□□□□ -0.727e-6■■■■□ 20.7
SMNDC1O75940 HDLBP-202ENST00000373292 3297 ntTSL 510.51□□□□□ -0.737e-6■■■■□ 20.7
SMNDC1O75940 NADK-217ENST00000498806 269 ntTSL 310.43□□□□□ -0.747e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-245ENST00000638087 9339 ntTSL 5 BASIC10.36□□□□□ -0.757e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-201ENST00000303660 3913 ntAPPRIS ALT1 TSL 1 (best) BASIC10.27□□□□□ -0.767e-6■■■■□ 20.7
SMNDC1O75940 HDLBP-236ENST00000477477 340 ntTSL 510.26□□□□□ -0.777e-6■■■■□ 20.7
SMNDC1O75940 HDLBP-235ENST00000476807 1070 ntTSL 510.26□□□□□ -0.777e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-224ENST00000539609 4061 ntTSL 2 BASIC10.23□□□□□ -0.777e-6■■■■□ 20.7
SMNDC1O75940 CLPTM1L-206ENST00000505914 519 ntTSL 310.21□□□□□ -0.777e-6■■■■□ 20.7
SMNDC1O75940 ABCC1-204ENST00000572882 4565 ntTSL 1 (best)10.11□□□□□ -0.797e-6■■■■□ 20.7
SMNDC1O75940 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC9.92□□□□□ -0.826e-11■■■■□ 20.7
SMNDC1O75940 HDLBP-201ENST00000310931 4571 ntAPPRIS P1 TSL 1 (best) BASIC9.86□□□□□ -0.837e-6■■■■□ 20.7
SMNDC1O75940 CENPE-204ENST00000509120 792 ntTSL 39.69□□□□□ -0.866e-11■■■■□ 20.7
SMNDC1O75940 P3H1-205ENST00000431412 836 ntTSL 59.69□□□□□ -0.867e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-210ENST00000440875 1809 ntTSL 5 BASIC9.68□□□□□ -0.867e-6■■■■□ 20.7
SMNDC1O75940 CLPTM1L-208ENST00000507195 628 ntTSL 59.54□□□□□ -0.887e-6■■■■□ 20.7
SMNDC1O75940 VPS29-203ENST00000546588 1059 ntTSL 3 BASIC8.95□□□□□ -0.986e-11■■■■□ 20.7
SMNDC1O75940 CLPTM1L-204ENST00000503534 742 ntTSL 28.87□□□□□ -0.997e-6■■■■□ 20.7
SMNDC1O75940 CENPE-203ENST00000503705 3468 ntTSL 28.74□□□□□ -1.016e-11■■■■□ 20.7
SMNDC1O75940 ZEB2-227ENST00000627532 9541 ntAPPRIS P2 TSL 1 (best) BASIC8.72□□□□□ -1.017e-6■■■■□ 20.7
SMNDC1O75940 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC8.18□□□□□ -1.16e-11■■■■□ 20.7
SMNDC1O75940 ZEB2-206ENST00000427902 2236 ntTSL 1 (best)8.14□□□□□ -1.117e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-205ENST00000419938 1755 ntTSL 2 BASIC8.13□□□□□ -1.117e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-232ENST00000636026 5172 ntTSL 5 BASIC8.07□□□□□ -1.127e-6■■■■□ 20.7
SMNDC1O75940 HDLBP-225ENST00000452931 801 ntTSL 58.06□□□□□ -1.127e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-240ENST00000637267 2677 ntTSL 57.9□□□□□ -1.157e-6■■■■□ 20.7
SMNDC1O75940 VPS29-202ENST00000447578 996 ntTSL 1 (best) BASIC7.7□□□□□ -1.186e-11■■■■□ 20.7
SMNDC1O75940 ZEB2-238ENST00000636820 9115 ntTSL 57.49□□□□□ -1.217e-6■■■■□ 20.7
SMNDC1O75940 VPS29-205ENST00000548539 598 ntTSL 37.48□□□□□ -1.216e-11■■■■□ 20.7
SMNDC1O75940 KDM3B-207ENST00000510866 6324 ntTSL 1 (best)7.14□□□□□ -1.277e-6■■■■□ 20.7
SMNDC1O75940 UBP1-212ENST00000492136 7394 ntTSL 27.11□□□□□ -1.276e-11■■■■□ 20.7
SMNDC1O75940 ZEB2-244ENST00000638007 9140 ntTSL 5 BASIC6.96□□□□□ -1.37e-6■■■■□ 20.7
SMNDC1O75940 UBP1-207ENST00000466441 927 ntTSL 1 (best)6.92□□□□□ -1.36e-11■■■■□ 20.7
SMNDC1O75940 KDM3B-204ENST00000507996 3034 ntTSL 26.87□□□□□ -1.317e-6■■■■□ 20.7
SMNDC1O75940 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.06□□□□□ -1.447e-6■■■■□ 20.7
SMNDC1O75940 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.71□□□□□ -1.57e-6■■■■□ 20.7
SMNDC1O75940 UBP1-210ENST00000486388 928 ntTSL 35.61□□□□□ -1.516e-11■■■■□ 20.7
SMNDC1O75940 P3H1-208ENST00000460831 585 ntTSL 25.59□□□□□ -1.517e-6■■■■□ 20.7
SMNDC1O75940 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.84□□□□□ -1.636e-11■■■■□ 20.7
SMNDC1O75940 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.58□□□□□ -1.686e-11■■■■□ 20.7
SMNDC1O75940 ZNF800-205ENST00000436992 502 ntTSL 24.02□□□□□ -1.777e-6■■■■□ 20.7
SMNDC1O75940 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -26e-11■■■■□ 20.7
SMNDC1O75940 MTA1-205ENST00000426567 568 ntTSL 312.93□□□□□ -0.346e-8■■■■□ 20.7
SMNDC1O75940 MATR3-235ENST00000506147 580 ntTSL 413.93□□□□□ -0.189e-8■■■■□ 20.7
SMNDC1O75940 MATR3-233ENST00000504203 2243 ntTSL 2 BASIC13.13□□□□□ -0.319e-8■■■■□ 20.7
SMNDC1O75940 MATR3-238ENST00000512107 579 ntTSL 412.84□□□□□ -0.359e-8■■■■□ 20.7
SMNDC1O75940 MATR3-237ENST00000509990 3249 ntAPPRIS P1 TSL 2 BASIC12.4□□□□□ -0.429e-8■■■■□ 20.7
SMNDC1O75940 MATR3-236ENST00000509644 750 ntTSL 311.63□□□□□ -0.559e-8■■■■□ 20.7
SMNDC1O75940 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.139e-8■■■■□ 20.7
SMNDC1O75940 MATR3-232ENST00000502929 4373 ntTSL 2 BASIC7.89□□□□□ -1.159e-8■■■■□ 20.7
SMNDC1O75940 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC6.07□□□□□ -1.449e-8■■■■□ 20.7
SMNDC1O75940 ARVCF-207ENST00000473551 2108 ntTSL 219.06■□□□□ 0.644e-6■■■■□ 20.7
SMNDC1O75940 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.134e-6■■■■□ 20.7
SMNDC1O75940 TANGO2-226ENST00000490583 888 ntTSL 315.3■□□□□ 0.041e-6■■■■□ 20.7
SMNDC1O75940 INCENP-203ENST00000528037 1372 ntTSL 1 (best)13.81□□□□□ -0.25e-6■■■■□ 20.7
SMNDC1O75940 LINC01089-207ENST00000538335 630 ntTSL 3 BASIC25.47■■□□□ 1.676e-8■■■■□ 20.7
SMNDC1O75940 LINC01089-212ENST00000545885 559 ntTSL 28.5□□□□□ -1.056e-8■■■■□ 20.7
SMNDC1O75940 TANGO2-218ENST00000462579 649 ntTSL 414.68□□□□□ -0.063e-7■■■■□ 20.7
SMNDC1O75940 TANGO2-223ENST00000484373 3109 ntTSL 412.45□□□□□ -0.423e-7■■■■□ 20.7
SMNDC1O75940 TANGO2-224ENST00000485715 617 ntTSL 512.09□□□□□ -0.473e-7■■■■□ 20.7
SMNDC1O75940 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC18.83■□□□□ 0.612e-6■■■■□ 20.7
SMNDC1O75940 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.52e-6■■■■□ 20.7
SMNDC1O75940 PTTG1IP-206ENST00000480234 398 ntTSL 318.2■□□□□ 0.51e-23■■■■□ 20.7
SMNDC1O75940 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC13.84□□□□□ -0.198e-11■■■■□ 20.6
SMNDC1O75940 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC13.74□□□□□ -0.218e-11■■■■□ 20.6
SMNDC1O75940 ACTB-203ENST00000417101 472 ntTSL 419.69■□□□□ 0.745e-14■■■■□ 20.6
SMNDC1O75940 SNORD116-8-201ENST00000384365 95 ntBASIC8.73□□□□□ -1.015e-8■■■■□ 20.6
SMNDC1O75940 ANKRD10-210ENST00000494859 705 ntTSL 526.55■■□□□ 1.841e-20■■■■□ 20.6
SMNDC1O75940 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.691e-20■■■■□ 20.6
SMNDC1O75940 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC17.95■□□□□ 0.461e-20■■■■□ 20.6
SMNDC1O75940 ANKRD10-206ENST00000465753 997 ntTSL 1 (best)17.04■□□□□ 0.321e-20■■■■□ 20.6
SMNDC1O75940 ANKRD10-203ENST00000460846 535 ntTSL 311.64□□□□□ -0.551e-20■■■■□ 20.6
SMNDC1O75940 ANKRD10-209ENST00000489973 745 ntTSL 37.99□□□□□ -1.131e-20■■■■□ 20.6
SMNDC1O75940 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.354e-19■■■■□ 20.6
SMNDC1O75940 NOP53-207ENST00000598681 1358 ntTSL 519.88■□□□□ 0.774e-19■■■■□ 20.6
SMNDC1O75940 NOP53-204ENST00000595143 810 ntTSL 517.99■□□□□ 0.474e-19■■■■□ 20.6
SMNDC1O75940 NOP53-212ENST00000600410 4185 ntTSL 217.74■□□□□ 0.434e-19■■■■□ 20.6
SMNDC1O75940 NOP53-205ENST00000597985 656 ntTSL 313.57□□□□□ -0.244e-19■■■■□ 20.6
SMNDC1O75940 NOP53-202ENST00000594182 303 ntTSL 313.49□□□□□ -0.254e-19■■■■□ 20.6
SMNDC1O75940 SNORD23-201ENST00000408876 110 ntBASIC12.04□□□□□ -0.484e-19■■■■□ 20.6
SMNDC1O75940 NOP53-208ENST00000598959 501 ntTSL 59.34□□□□□ -0.914e-19■■■■□ 20.6
SMNDC1O75940 BCR-204ENST00000427791 771 ntTSL 1 (best)11.4□□□□□ -0.582e-6■■■■□ 20.5
SMNDC1O75940 CD81-205ENST00000475945 606 ntTSL 215.61■□□□□ 0.094e-6■■■■□ 20.5
SMNDC1O75940 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.184e-6■■■■□ 20.5
SMNDC1O75940 CD81-215ENST00000530648 558 ntTSL 412.3□□□□□ -0.444e-6■■■■□ 20.5
SMNDC1O75940 PLEC-202ENST00000345136 14803 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.442e-7■■■■□ 20.5
SMNDC1O75940 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC24.99■■□□□ 1.592e-6■■■■□ 20.5
SMNDC1O75940 NFKBIA-207ENST00000557100 825 ntTSL 315.9■□□□□ 0.142e-6■■■■□ 20.5
SMNDC1O75940 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -02e-6■■■■□ 20.5
SMNDC1O75940 NFKBIA-210ENST00000557459 780 ntTSL 214.18□□□□□ -0.142e-6■■■■□ 20.5
SMNDC1O75940 NFKBIA-203ENST00000554001 1396 ntTSL 513.26□□□□□ -0.292e-6■■■■□ 20.5
SMNDC1O75940 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC11.05□□□□□ -0.642e-6■■■■□ 20.5
SMNDC1O75940 DAZAP1-206ENST00000587833 560 ntTSL 59.29□□□□□ -0.928e-8■■■■□ 20.5
SMNDC1O75940 ARFRP1-205ENST00000610414 1251 ntTSL 215.84■□□□□ 0.137e-8■■■■□ 20.5
SMNDC1O75940 MTA1-212ENST00000481635 700 ntTSL 214.36□□□□□ -0.117e-10■■■■□ 20.5
SMNDC1O75940 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.99■□□□□ 0.632e-7■■■■□ 20.5
Retrieved 100 of 11,362 protein–RNA pairs in 148.8 ms