RNA–Protein interactions for RNA: ENST00000497527.1

HPS1-213, Transcript of HPS1, biogenesis of lysosomal organelles complex 3 subunit 1, humanhuman

TSL 3

Gene HPS1, Length 536 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS1-213ENST00000497527 NISCHQ9Y2I1 1504 aa27.87■■■□□ 2.05
HPS1-213ENST00000497527 CCDC180Q9P1Z9 1646 aa24.53■■□□□ 1.52
HPS1-213ENST00000497527 ZCCHC6Q5VYS8 1495 aaKnown RBP23.41■■□□□ 1.34
HPS1-213ENST00000497527 DCAF1Q9Y4B6 1507 aa23.15■■□□□ 1.3
HPS1-213ENST00000497527 ABCC9O60706 1549 aa23.08■■□□□ 1.28
HPS1-213ENST00000497527 MYO15BQ96JP2 1530 aa22.95■■□□□ 1.26
HPS1-213ENST00000497527 DCAF8L2P0C7V8 631 aa22.91■■□□□ 1.26
HPS1-213ENST00000497527 NACADO15069 1562 aa22.82■■□□□ 1.24
HPS1-213ENST00000497527 RB1CC1Q8TDY2 1594 aa22.66■■□□□ 1.22
HPS1-213ENST00000497527 SHROOM4Q9ULL8 1493 aa22.46■■□□□ 1.19
HPS1-213ENST00000497527 SCRIBQ14160 1630 aa22.35■■□□□ 1.17
HPS1-213ENST00000497527 UNC13AQ9UPW8 1703 aa22.17■■□□□ 1.14
HPS1-213ENST00000497527 BICRAQ9NZM4 1560 aa21.86■■□□□ 1.09
HPS1-213ENST00000497527 PABPN1Q86U42 306 aaKnown RBP eCLIP21.63■■□□□ 1.05
HPS1-213ENST00000497527 BAZ1AQ9NRL2 1556 aaPredicted RBP21.6■■□□□ 1.05
HPS1-213ENST00000497527 SUPT5HO00267 1087 aaKnown RBP21.57■■□□□ 1.04
HPS1-213ENST00000497527 CECR2Q9BXF3 1484 aa21.55■■□□□ 1.04
HPS1-213ENST00000497527 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
HPS1-213ENST00000497527 SMARCA4P51532 1647 aa21.49■■□□□ 1.03
HPS1-213ENST00000497527 MROH2BQ7Z745 1585 aa21.46■■□□□ 1.03
HPS1-213ENST00000497527 WIZO95785 1651 aa21.31■■□□□ 1
HPS1-213ENST00000497527 PEG3Q9GZU2 1588 aa21.27■■□□□ 1
HPS1-213ENST00000497527 EIF4G1Q04637 1599 aaKnown RBP21.25■□□□□ 0.99
HPS1-213ENST00000497527 SMARCA2P51531 1590 aa21.21■□□□□ 0.99
HPS1-213ENST00000497527 TOP2AP11388 1531 aaKnown RBP21.16■□□□□ 0.98
HPS1-213ENST00000497527 ATAD2BQ9ULI0 1458 aa21.12■□□□□ 0.97
HPS1-213ENST00000497527 BAZ1BQ9UIG0 1483 aaKnown RBP21.03■□□□□ 0.96
HPS1-213ENST00000497527 HMGXB3Q12766 1538 aa21.02■□□□□ 0.96
HPS1-213ENST00000497527 NCAPD3P42695 1498 aa20.99■□□□□ 0.95
HPS1-213ENST00000497527 CC2D2AQ9P2K1 1620 aa20.96■□□□□ 0.95
HPS1-213ENST00000497527 CCDC88BA6NC98 1476 aa20.85■□□□□ 0.93
HPS1-213ENST00000497527 CHIC1Q5VXU3 224 aa20.61■□□□□ 0.89
HPS1-213ENST00000497527 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
HPS1-213ENST00000497527 CFTRP13569 1480 aa20.48■□□□□ 0.87
HPS1-213ENST00000497527 CADPSQ9ULU8 1353 aa20.42■□□□□ 0.86
HPS1-213ENST00000497527 TRIM41Q8WV44 630 aa20.39■□□□□ 0.85
HPS1-213ENST00000497527 LAMC3Q9Y6N6 1575 aa20.38■□□□□ 0.85
HPS1-213ENST00000497527 ABCC8Q09428 1581 aa20.35■□□□□ 0.85
HPS1-213ENST00000497527 WRNQ14191 1432 aaPredicted RBP eCLIP20.3■□□□□ 0.84
HPS1-213ENST00000497527 DNAJC5BQ9UF47 199 aa20.3■□□□□ 0.84
HPS1-213ENST00000497527 BIVM-ERCC5R4GMW8 1640 aa20.22■□□□□ 0.83
HPS1-213ENST00000497527 TOP2BQ02880 1626 aa20.2■□□□□ 0.82
HPS1-213ENST00000497527 SYNJ1O43426 1573 aa20.2■□□□□ 0.82
HPS1-213ENST00000497527 FANCD2Q9BXW9 1451 aa20.19■□□□□ 0.82
HPS1-213ENST00000497527 NESP48681 1621 aa20.18■□□□□ 0.82
HPS1-213ENST00000497527 PDS5BQ9NTI5 1447 aa20.18■□□□□ 0.82
HPS1-213ENST00000497527 CEP164Q9UPV0 1460 aa20.12■□□□□ 0.81
HPS1-213ENST00000497527 CUX1P39880 1505 aa20.1■□□□□ 0.81
HPS1-213ENST00000497527 KIF21AQ7Z4S6 1674 aa20.08■□□□□ 0.81
HPS1-213ENST00000497527 DNMBPQ6XZF7 1577 aa20.06■□□□□ 0.8
HPS1-213ENST00000497527 EEA1Q15075 1411 aa20.05■□□□□ 0.8
HPS1-213ENST00000497527 TOPBP1Q92547 1522 aa19.97■□□□□ 0.79
HPS1-213ENST00000497527 FGD5Q6ZNL6 1462 aa19.92■□□□□ 0.78
HPS1-213ENST00000497527 MRC2Q9UBG0 1479 aa19.92■□□□□ 0.78
HPS1-213ENST00000497527 URB2Q14146 1524 aaKnown RBP19.91■□□□□ 0.78
HPS1-213ENST00000497527 SOGA1O94964 1423 aa19.9■□□□□ 0.78
HPS1-213ENST00000497527 FAM9AQ8IZU1 332 aaPredicted RBP19.88■□□□□ 0.77
HPS1-213ENST00000497527 ERCC6Q03468 1493 aa19.87■□□□□ 0.77
HPS1-213ENST00000497527 POLA1P09884 1462 aaPredicted RBP19.84■□□□□ 0.77
HPS1-213ENST00000497527 KIF27Q86VH2 1401 aa19.84■□□□□ 0.77
HPS1-213ENST00000497527 WDR62O43379 1518 aa19.82■□□□□ 0.76
HPS1-213ENST00000497527 CSRNP3Q8WYN3 585 aa19.81■□□□□ 0.76
HPS1-213ENST00000497527 RUSC2Q8N2Y8 1516 aa19.81■□□□□ 0.76
HPS1-213ENST00000497527 THOC2Q8NI27 1593 aaKnown RBP19.78■□□□□ 0.76
HPS1-213ENST00000497527 ABCA10Q8WWZ4 1543 aa19.78■□□□□ 0.76
HPS1-213ENST00000497527 WDR97A6NE52 1622 aa19.78■□□□□ 0.76
HPS1-213ENST00000497527 KIF21BO75037 1637 aa19.78■□□□□ 0.76
HPS1-213ENST00000497527 CUX2O14529 1486 aa19.76■□□□□ 0.75
HPS1-213ENST00000497527 LOC105371045A0A1W2PR82 267 aa19.72■□□□□ 0.75
HPS1-213ENST00000497527 GOLGA3Q08378 1498 aa19.71■□□□□ 0.75
HPS1-213ENST00000497527 RAD54L2Q9Y4B4 1467 aa19.71■□□□□ 0.75
HPS1-213ENST00000497527 TARBP1Q13395 1621 aaKnown RBP19.69■□□□□ 0.74
HPS1-213ENST00000497527 ERICH3Q5RHP9 1530 aa19.67■□□□□ 0.74
HPS1-213ENST00000497527 IFT140Q96RY7 1462 aa19.66■□□□□ 0.74
HPS1-213ENST00000497527 ABCA5Q8WWZ7 1642 aa19.65■□□□□ 0.74
HPS1-213ENST00000497527 PRXQ9BXM0 1461 aa19.63■□□□□ 0.73
HPS1-213ENST00000497527 CUL7Q14999 1698 aa19.62■□□□□ 0.73
HPS1-213ENST00000497527 TNIKQ9UKE5 1360 aa19.58■□□□□ 0.73
HPS1-213ENST00000497527 GAPVD1Q14C86 1478 aa19.58■□□□□ 0.72
HPS1-213ENST00000497527 IGF1RP08069 1367 aa19.57■□□□□ 0.72
HPS1-213ENST00000497527 PBRM1Q86U86 1689 aa19.56■□□□□ 0.72
HPS1-213ENST00000497527 RAPGEF2Q9Y4G8 1499 aa19.54■□□□□ 0.72
HPS1-213ENST00000497527 UBTFP17480 764 aaKnown RBP19.53■□□□□ 0.72
HPS1-213ENST00000497527 EHMT2Q96KQ7 1210 aa19.52■□□□□ 0.72
HPS1-213ENST00000497527 CARMIL1Q5VZK9 1371 aa19.52■□□□□ 0.72
HPS1-213ENST00000497527 TDRD9Q8NDG6 1382 aaKnown RBP19.52■□□□□ 0.72
HPS1-213ENST00000497527 EIF4G3O43432 1585 aaKnown RBP19.47■□□□□ 0.71
HPS1-213ENST00000497527 GRIN2BQ13224 1484 aa19.47■□□□□ 0.71
HPS1-213ENST00000497527 CEP162Q5TB80 1403 aa19.43■□□□□ 0.7
HPS1-213ENST00000497527 AQRO60306 1485 aaKnown RBP eCLIP19.42■□□□□ 0.72e-6■□□□□ 8.5
HPS1-213ENST00000497527 ZNF608Q9ULD9 1512 aaPredicted RBP19.42■□□□□ 0.7
HPS1-213ENST00000497527 ADAMTS12P58397 1594 aa19.41■□□□□ 0.7
HPS1-213ENST00000497527 CTTNBP2Q8WZ74 1663 aa19.4■□□□□ 0.7
HPS1-213ENST00000497527 FHAD1B1AJZ9 1412 aa19.38■□□□□ 0.69
HPS1-213ENST00000497527 MAGI1Q96QZ7 1491 aaPredicted RBP19.35■□□□□ 0.69
HPS1-213ENST00000497527 CLIP1P30622 1438 aa19.34■□□□□ 0.69
HPS1-213ENST00000497527 SNAPC4Q5SXM2 1469 aa19.3■□□□□ 0.68
HPS1-213ENST00000497527 SYNJ2O15056 1496 aa19.25■□□□□ 0.67
HPS1-213ENST00000497527 EFCAB5A4FU69 1503 aa19.22■□□□□ 0.67
HPS1-213ENST00000497527 GRIN2AQ12879 1464 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.9 ms