RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
VPS29-210ENST00000552130 CHIC1Q5VXU3 224 aa28.34■■■□□ 2.13
VPS29-210ENST00000552130 SENP3Q9H4L4 574 aaPredicted RBP25.57■■□□□ 1.68
VPS29-210ENST00000552130 PHF23Q9BUL5 403 aaPredicted RBP25.23■■□□□ 1.63
VPS29-210ENST00000552130 FOXD1Q16676 465 aa23.88■■□□□ 1.41
VPS29-210ENST00000552130 PLPPR3Q6T4P5 718 aa22.53■■□□□ 1.2
VPS29-210ENST00000552130 MSH5O43196 834 aa22.38■■□□□ 1.17
VPS29-210ENST00000552130 POTEDQ86YR6 584 aa22.37■■□□□ 1.17
VPS29-210ENST00000552130 PPP6R1Q9UPN7 881 aa22.23■■□□□ 1.15
VPS29-210ENST00000552130 PIAS4Q8N2W9 510 aaPredicted RBP22.2■■□□□ 1.14
VPS29-210ENST00000552130 ADRA2BP18089 450 aa22.08■■□□□ 1.13
VPS29-210ENST00000552130 MAPK8IP2Q13387 824 aaPredicted RBP20.35■□□□□ 0.85
VPS29-210ENST00000552130 DMRT2Q9Y5R5 561 aa20.29■□□□□ 0.84
VPS29-210ENST00000552130 SCAF1Q9H7N4 1312 aaKnown RBP20.18■□□□□ 0.82
VPS29-210ENST00000552130 PPP4R3CPQ6ZMV5 832 aa19.72■□□□□ 0.75
VPS29-210ENST00000552130 HOXD11P31277 338 aaPredicted RBP19.51■□□□□ 0.71
VPS29-210ENST00000552130 CNKSR2Q8WXI2 1034 aa19.4■□□□□ 0.7
VPS29-210ENST00000552130 RNF216Q9NWF9 866 aaPredicted RBP19.29■□□□□ 0.68
VPS29-210ENST00000552130 DCAF8L1A6NGE4 600 aa19.28■□□□□ 0.68
VPS29-210ENST00000552130 CACNB1Q02641 598 aaPredicted RBP19.23■□□□□ 0.67
VPS29-210ENST00000552130 RNF39Q9H2S5 420 aa19.12■□□□□ 0.65
VPS29-210ENST00000552130 DNAJC5BQ9UF47 199 aa18.93■□□□□ 0.62
VPS29-210ENST00000552130 NCBP3Q53F19 620 aaKnown RBP18.87■□□□□ 0.61
VPS29-210ENST00000552130 C1QBPQ07021 282 aaKnown RBP18.81■□□□□ 0.6
VPS29-210ENST00000552130 NPM3O75607 178 aaKnown RBP18.67■□□□□ 0.58
VPS29-210ENST00000552130 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.45■□□□□ 0.54
VPS29-210ENST00000552130 KCNA4P22459 653 aa18.15■□□□□ 0.5
VPS29-210ENST00000552130 U3KPZ7 1027 aaPredicted RBP18.15■□□□□ 0.5
VPS29-210ENST00000552130 SLC4A2P04920 1241 aa17.91■□□□□ 0.46
VPS29-210ENST00000552130 SPINK5Q9NQ38 1064 aaPredicted RBP17.9■□□□□ 0.46
VPS29-210ENST00000552130 DSG3P32926 999 aa17.85■□□□□ 0.45
VPS29-210ENST00000552130 CAPN15O75808 1086 aa17.79■□□□□ 0.44
VPS29-210ENST00000552130 APLP2Q06481 763 aa17.53■□□□□ 0.4
VPS29-210ENST00000552130 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.51■□□□□ 0.39
VPS29-210ENST00000552130 HNRNPUL2Q1KMD3 747 aaKnown RBP17.51■□□□□ 0.39
VPS29-210ENST00000552130 ZNF219Q9P2Y4 722 aaPredicted RBP17.49■□□□□ 0.39
VPS29-210ENST00000552130 TRHP20396 242 aaPredicted RBP17.48■□□□□ 0.39
VPS29-210ENST00000552130 SAMD1Q6SPF0 538 aaPredicted RBP17.42■□□□□ 0.38
VPS29-210ENST00000552130 POTEHQ6S545 545 aa17.4■□□□□ 0.38
VPS29-210ENST00000552130 ABCB7O75027 752 aa17.38■□□□□ 0.37
VPS29-210ENST00000552130 MYCNP04198 464 aaPredicted RBP17.24■□□□□ 0.35
VPS29-210ENST00000552130 SLC4A1APQ9BWU0 796 aaKnown RBP17.05■□□□□ 0.32
VPS29-210ENST00000552130 POLA2Q14181 598 aa17.02■□□□□ 0.32
VPS29-210ENST00000552130 FOXD4L1Q9NU39 408 aa16.98■□□□□ 0.31
VPS29-210ENST00000552130 RBM42Q9BTD8 480 aaKnown RBP16.97■□□□□ 0.31
VPS29-210ENST00000552130 ATF5Q9Y2D1 282 aaPredicted RBP16.9■□□□□ 0.3
VPS29-210ENST00000552130 ZBTB22O15209 634 aa16.74■□□□□ 0.27
VPS29-210ENST00000552130 CHRDL2Q6WN34 429 aa16.67■□□□□ 0.26
VPS29-210ENST00000552130 ZBTB12Q9Y330 459 aaPredicted RBP16.66■□□□□ 0.26
VPS29-210ENST00000552130 AKT1S1Q96B36 256 aa16.58■□□□□ 0.24
VPS29-210ENST00000552130 ATXN8OSP0DMR3 200 aa16.52■□□□□ 0.24
VPS29-210ENST00000552130 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
VPS29-210ENST00000552130 REM2Q8IYK8 340 aaPredicted RBP16.42■□□□□ 0.22
VPS29-210ENST00000552130 PIP4P2Q8N4L2 257 aa16.27■□□□□ 0.2
VPS29-210ENST00000552130 PITPNM1O00562 1244 aa16.24■□□□□ 0.19
VPS29-210ENST00000552130 FXR2P51116 673 aaKnown RBP eCLIP16.19■□□□□ 0.18
VPS29-210ENST00000552130 SPDYE2BA6NHP3 402 aa16.16■□□□□ 0.18
VPS29-210ENST00000552130 SPDYE6P0CI01 402 aa16.16■□□□□ 0.18
VPS29-210ENST00000552130 SPDYE2Q495Y8 402 aa16.16■□□□□ 0.18
VPS29-210ENST00000552130 FBLN2P98095 1184 aa16.14■□□□□ 0.17
VPS29-210ENST00000552130 SP7Q8TDD2 431 aaPredicted RBP16.14■□□□□ 0.17
VPS29-210ENST00000552130 MKRN4PQ13434 485 aaPredicted RBP16.12■□□□□ 0.17
VPS29-210ENST00000552130 SSUH2Q9Y2M2 353 aa15.98■□□□□ 0.15
VPS29-210ENST00000552130 HAX1O00165 279 aa15.93■□□□□ 0.14
VPS29-210ENST00000552130 ZNF692Q9BU19 519 aaPredicted RBP15.9■□□□□ 0.14
VPS29-210ENST00000552130 SPDYE1Q8NFV5 336 aaPredicted RBP15.88■□□□□ 0.13
VPS29-210ENST00000552130 EVX2Q03828 476 aa15.83■□□□□ 0.12
VPS29-210ENST00000552130 CSRNP3Q8WYN3 585 aa15.8■□□□□ 0.12
VPS29-210ENST00000552130 CLEC11AQ9Y240 323 aa15.8■□□□□ 0.12
VPS29-210ENST00000552130 PRKAR2AP13861 404 aaKnown RBP15.79■□□□□ 0.12
VPS29-210ENST00000552130 C19orf67A6NJJ6 358 aa15.67■□□□□ 0.1
VPS29-210ENST00000552130 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
VPS29-210ENST00000552130 CHADLQ6NUI6 762 aa15.57■□□□□ 0.08
VPS29-210ENST00000552130 PRR29P0C7W0 189 aa15.55■□□□□ 0.08
VPS29-210ENST00000552130 GABBR2O75899 941 aa15.44■□□□□ 0.06
VPS29-210ENST00000552130 EHMT2Q96KQ7 1210 aa15.37■□□□□ 0.05
VPS29-210ENST00000552130 FARP1Q9Y4F1 1045 aaPredicted RBP15.36■□□□□ 0.05
VPS29-210ENST00000552130 CD44P16070 742 aaKnown RBP15.27■□□□□ 0.04
VPS29-210ENST00000552130 SPDYE4A6NLX3 237 aa15.21■□□□□ 0.03
VPS29-210ENST00000552130 CREBZFQ9NS37 354 aa15.21■□□□□ 0.03
VPS29-210ENST00000552130 STAG3Q9UJ98 1225 aa15.21■□□□□ 0.03
VPS29-210ENST00000552130 CLCN6P51797 869 aa15.17■□□□□ 0.02
VPS29-210ENST00000552130 POTEIP0CG38 1075 aa15.16■□□□□ 0.02
VPS29-210ENST00000552130 LHX8Q68G74 356 aa15.11■□□□□ 0.01
VPS29-210ENST00000552130 ZNF579Q8NAF0 562 aaKnown RBP15.09■□□□□ 0.01
VPS29-210ENST00000552130 ZRANB1Q9UGI0 708 aa15.02■□□□□ -0
VPS29-210ENST00000552130 MNX1P50219 401 aaPredicted RBP14.99□□□□□ -0.01
VPS29-210ENST00000552130 PROM2Q8N271 834 aa14.95□□□□□ -0.02
VPS29-210ENST00000552130 DCBLD2Q96PD2 775 aa14.9□□□□□ -0.02
VPS29-210ENST00000552130 GALR2O43603 387 aaPredicted RBP14.89□□□□□ -0.03
VPS29-210ENST00000552130 NPM1P06748 294 aaKnown RBP eCLIP14.85□□□□□ -0.03
VPS29-210ENST00000552130 PAK3O75914 559 aaPredicted RBP14.82□□□□□ -0.04
VPS29-210ENST00000552130 PHF12Q96QT6 1004 aa14.81□□□□□ -0.04
VPS29-210ENST00000552130 POTEB2H3BUK9 544 aa14.65□□□□□ -0.06
VPS29-210ENST00000552130 PELP1Q8IZL8 1130 aaKnown RBP14.65□□□□□ -0.06
VPS29-210ENST00000552130 MS4A3Q96HJ5 214 aa14.64□□□□□ -0.07
VPS29-210ENST00000552130 ASTLQ6HA08 431 aaPredicted RBP14.61□□□□□ -0.07
VPS29-210ENST00000552130 PLSCR2Q9NRY7 297 aa14.61□□□□□ -0.07
VPS29-210ENST00000552130 CCDC61Q9Y6R9 512 aa14.61□□□□□ -0.07
VPS29-210ENST00000552130 OTUD5Q96G74 571 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 1313.9 ms