RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 AEBP2Q6ZN18 517 aaPredicted RBP27.54■■■□□ 2
VPS29-205ENST00000548539 CHIC1Q5VXU3 224 aa25.92■■□□□ 1.74
VPS29-205ENST00000548539 SENP3Q9H4L4 574 aaPredicted RBP23.6■■□□□ 1.37
VPS29-205ENST00000548539 PHF23Q9BUL5 403 aaPredicted RBP23.25■■□□□ 1.31
VPS29-205ENST00000548539 FOXD1Q16676 465 aa22■■□□□ 1.11
VPS29-205ENST00000548539 POTEDQ86YR6 584 aa20.76■□□□□ 0.91
VPS29-205ENST00000548539 MSH5O43196 834 aa20.73■□□□□ 0.91
VPS29-205ENST00000548539 PLPPR3Q6T4P5 718 aa20.62■□□□□ 0.89
VPS29-205ENST00000548539 PIAS4Q8N2W9 510 aaPredicted RBP20.53■□□□□ 0.88
VPS29-205ENST00000548539 PPP6R1Q9UPN7 881 aa20.35■□□□□ 0.85
VPS29-205ENST00000548539 ADRA2BP18089 450 aa20.29■□□□□ 0.84
VPS29-205ENST00000548539 MAPK8IP2Q13387 824 aaPredicted RBP18.71■□□□□ 0.59
VPS29-205ENST00000548539 DMRT2Q9Y5R5 561 aa18.65■□□□□ 0.58
VPS29-205ENST00000548539 SCAF1Q9H7N4 1312 aaKnown RBP18.63■□□□□ 0.57
VPS29-205ENST00000548539 PPP4R3CPQ6ZMV5 832 aa18.03■□□□□ 0.48
VPS29-205ENST00000548539 CACNB1Q02641 598 aaPredicted RBP17.98■□□□□ 0.47
VPS29-205ENST00000548539 DCAF8L1A6NGE4 600 aa17.97■□□□□ 0.47
VPS29-205ENST00000548539 HOXD11P31277 338 aaPredicted RBP17.85■□□□□ 0.45
VPS29-205ENST00000548539 CNKSR2Q8WXI2 1034 aa17.76■□□□□ 0.43
VPS29-205ENST00000548539 RNF216Q9NWF9 866 aaPredicted RBP17.66■□□□□ 0.42
VPS29-205ENST00000548539 RNF39Q9H2S5 420 aa17.63■□□□□ 0.41
VPS29-205ENST00000548539 C1QBPQ07021 282 aaKnown RBP17.39■□□□□ 0.37
VPS29-205ENST00000548539 NCBP3Q53F19 620 aaKnown RBP17.3■□□□□ 0.36
VPS29-205ENST00000548539 DNAJC5BQ9UF47 199 aa17.29■□□□□ 0.36
VPS29-205ENST00000548539 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.07■□□□□ 0.32
VPS29-205ENST00000548539 NPM3O75607 178 aaKnown RBP16.99■□□□□ 0.31
VPS29-205ENST00000548539 U3KPZ7 1027 aaPredicted RBP16.62■□□□□ 0.25
VPS29-205ENST00000548539 CAPN15O75808 1086 aa16.51■□□□□ 0.23
VPS29-205ENST00000548539 SPINK5Q9NQ38 1064 aaPredicted RBP16.47■□□□□ 0.23
VPS29-205ENST00000548539 KCNA4P22459 653 aa16.42■□□□□ 0.22
VPS29-205ENST00000548539 DSG3P32926 999 aa16.42■□□□□ 0.22
VPS29-205ENST00000548539 SLC4A2P04920 1241 aa16.28■□□□□ 0.2
VPS29-205ENST00000548539 APLP2Q06481 763 aa16.21■□□□□ 0.19
VPS29-205ENST00000548539 TRHP20396 242 aaPredicted RBP16.17■□□□□ 0.18
VPS29-205ENST00000548539 POTEHQ6S545 545 aa16.17■□□□□ 0.18
VPS29-205ENST00000548539 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.12■□□□□ 0.17
VPS29-205ENST00000548539 HNRNPUL2Q1KMD3 747 aaKnown RBP16.12■□□□□ 0.17
VPS29-205ENST00000548539 ZNF219Q9P2Y4 722 aaPredicted RBP16.12■□□□□ 0.17
VPS29-205ENST00000548539 ABCB7O75027 752 aa16.08■□□□□ 0.16
VPS29-205ENST00000548539 SAMD1Q6SPF0 538 aaPredicted RBP16■□□□□ 0.15
VPS29-205ENST00000548539 MYCNP04198 464 aaPredicted RBP15.74■□□□□ 0.11
VPS29-205ENST00000548539 RBM42Q9BTD8 480 aaKnown RBP15.72■□□□□ 0.11
VPS29-205ENST00000548539 POLA2Q14181 598 aa15.67■□□□□ 0.1
VPS29-205ENST00000548539 SLC4A1APQ9BWU0 796 aaKnown RBP15.48■□□□□ 0.07
VPS29-205ENST00000548539 CHRDL2Q6WN34 429 aa15.47■□□□□ 0.07
VPS29-205ENST00000548539 FOXD4L1Q9NU39 408 aa15.42■□□□□ 0.06
VPS29-205ENST00000548539 ATF5Q9Y2D1 282 aaPredicted RBP15.36■□□□□ 0.05
VPS29-205ENST00000548539 ZBTB12Q9Y330 459 aaPredicted RBP15.34■□□□□ 0.05
VPS29-205ENST00000548539 AKT1S1Q96B36 256 aa15.29■□□□□ 0.04
VPS29-205ENST00000548539 OSCARQ8IYS5 282 aa15.15■□□□□ 0.02
VPS29-205ENST00000548539 REM2Q8IYK8 340 aaPredicted RBP15.13■□□□□ 0.01
VPS29-205ENST00000548539 ZBTB22O15209 634 aa15.05■□□□□ -0
VPS29-205ENST00000548539 PIP4P2Q8N4L2 257 aa15.02■□□□□ -0
VPS29-205ENST00000548539 SP7Q8TDD2 431 aaPredicted RBP15.02■□□□□ -0
VPS29-205ENST00000548539 ATXN8OSP0DMR3 200 aa14.99□□□□□ -0.01
VPS29-205ENST00000548539 PITPNM1O00562 1244 aa14.97□□□□□ -0.01
VPS29-205ENST00000548539 FXR2P51116 673 aaKnown RBP eCLIP14.89□□□□□ -0.03
VPS29-205ENST00000548539 HAX1O00165 279 aa14.88□□□□□ -0.03
VPS29-205ENST00000548539 FBLN2P98095 1184 aa14.86□□□□□ -0.03
VPS29-205ENST00000548539 SPDYE2BA6NHP3 402 aa14.83□□□□□ -0.04
VPS29-205ENST00000548539 SPDYE6P0CI01 402 aa14.83□□□□□ -0.04
VPS29-205ENST00000548539 SPDYE2Q495Y8 402 aa14.83□□□□□ -0.04
VPS29-205ENST00000548539 CLEC11AQ9Y240 323 aa14.66□□□□□ -0.06
VPS29-205ENST00000548539 SPDYE1Q8NFV5 336 aaPredicted RBP14.65□□□□□ -0.06
VPS29-205ENST00000548539 MKRN4PQ13434 485 aaPredicted RBP14.64□□□□□ -0.07
VPS29-205ENST00000548539 ZNF692Q9BU19 519 aaPredicted RBP14.63□□□□□ -0.07
VPS29-205ENST00000548539 PRKAR2AP13861 404 aaKnown RBP14.6□□□□□ -0.07
VPS29-205ENST00000548539 EVX2Q03828 476 aa14.6□□□□□ -0.07
VPS29-205ENST00000548539 SSUH2Q9Y2M2 353 aa14.56□□□□□ -0.08
VPS29-205ENST00000548539 C19orf67A6NJJ6 358 aa14.42□□□□□ -0.1
VPS29-205ENST00000548539 PABPN1Q86U42 306 aaKnown RBP eCLIP14.38□□□□□ -0.11
VPS29-205ENST00000548539 PRR29P0C7W0 189 aa14.37□□□□□ -0.11
VPS29-205ENST00000548539 CHADLQ6NUI6 762 aa14.37□□□□□ -0.11
VPS29-205ENST00000548539 GABBR2O75899 941 aa14.29□□□□□ -0.12
VPS29-205ENST00000548539 CSRNP3Q8WYN3 585 aa14.14□□□□□ -0.15
VPS29-205ENST00000548539 FARP1Q9Y4F1 1045 aaPredicted RBP14.14□□□□□ -0.15
VPS29-205ENST00000548539 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
VPS29-205ENST00000548539 LHX8Q68G74 356 aa14.1□□□□□ -0.15
VPS29-205ENST00000548539 CLCN6P51797 869 aa14.01□□□□□ -0.17
VPS29-205ENST00000548539 STAG3Q9UJ98 1225 aa13.96□□□□□ -0.17
VPS29-205ENST00000548539 POTEIP0CG38 1075 aa13.95□□□□□ -0.18
VPS29-205ENST00000548539 DCBLD2Q96PD2 775 aa13.9□□□□□ -0.18
VPS29-205ENST00000548539 CREBZFQ9NS37 354 aa13.9□□□□□ -0.18
VPS29-205ENST00000548539 ZRANB1Q9UGI0 708 aa13.89□□□□□ -0.19
VPS29-205ENST00000548539 ZNF579Q8NAF0 562 aaKnown RBP13.87□□□□□ -0.19
VPS29-205ENST00000548539 SPDYE4A6NLX3 237 aa13.86□□□□□ -0.19
VPS29-205ENST00000548539 EHMT2Q96KQ7 1210 aa13.85□□□□□ -0.19
VPS29-205ENST00000548539 PAK3O75914 559 aaPredicted RBP13.75□□□□□ -0.21
VPS29-205ENST00000548539 GALR2O43603 387 aaPredicted RBP13.72□□□□□ -0.21
VPS29-205ENST00000548539 NPM1P06748 294 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS29-205ENST00000548539 PLSCR2Q9NRY7 297 aa13.7□□□□□ -0.22
VPS29-205ENST00000548539 PHF12Q96QT6 1004 aa13.65□□□□□ -0.22
VPS29-205ENST00000548539 MNX1P50219 401 aaPredicted RBP13.6□□□□□ -0.23
VPS29-205ENST00000548539 OTUD5Q96G74 571 aa13.51□□□□□ -0.25
VPS29-205ENST00000548539 POTEB2H3BUK9 544 aa13.49□□□□□ -0.25
VPS29-205ENST00000548539 PELP1Q8IZL8 1130 aaKnown RBP13.47□□□□□ -0.25
VPS29-205ENST00000548539 MS4A3Q96HJ5 214 aa13.44□□□□□ -0.26
VPS29-205ENST00000548539 ASTLQ6HA08 431 aaPredicted RBP13.42□□□□□ -0.26
VPS29-205ENST00000548539 PROM2Q8N271 834 aa13.42□□□□□ -0.26
VPS29-205ENST00000548539 TSPYL2Q9H2G4 693 aaPredicted RBP13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms