Protein–RNA interactions for Protein: Q9H0D6

XRN2, 5'-3' exoribonuclease 2, humanhuman

Known RBP eCLIP

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRN2Q9H0D6 AAMP-204ENST00000444053 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC15.36■□□□□ 0.053e-6■■■■■ 30.6
XRN2Q9H0D6 RELA-210ENST00000527074 585 ntTSL 214.67□□□□□ -0.061e-14■■■■■ 30.6
XRN2Q9H0D6 RELA-208ENST00000526283 2004 ntTSL 514.55□□□□□ -0.081e-14■■■■■ 30.6
XRN2Q9H0D6 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.154e-8■■■■■ 30.6
XRN2Q9H0D6 ZMIZ2-206ENST00000441627 5089 ntAPPRIS P4 TSL 1 (best) BASIC14.06□□□□□ -0.166e-10■■■■■ 30.6
XRN2Q9H0D6 ZNF331-213ENST00000509585 562 ntTSL 514.02□□□□□ -0.176e-7■■■■■ 30.6
XRN2Q9H0D6 ZNF331-204ENST00000502248 670 ntTSL 1 (best)13.06□□□□□ -0.326e-7■■■■■ 30.6
XRN2Q9H0D6 ORAOV1-203ENST00000441922 359 ntTSL 1 (best)12.53□□□□□ -0.46e-10■■■■■ 30.6
XRN2Q9H0D6 RELA-219ENST00000532879 567 ntTSL 512.49□□□□□ -0.411e-14■■■■■ 30.6
XRN2Q9H0D6 ZNF331-201ENST00000253144 5042 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.476e-7■■■■■ 30.6
XRN2Q9H0D6 RELA-205ENST00000525693 3183 ntTSL 1 (best) BASIC11.03□□□□□ -0.641e-14■■■■■ 30.6
XRN2Q9H0D6 RELA-217ENST00000531484 2251 ntTSL 210.78□□□□□ -0.681e-14■■■■■ 30.6
XRN2Q9H0D6 CPSF7-226ENST00000626926 306 ntTSL 5 BASIC10.65□□□□□ -0.76e-10■■■■■ 30.6
XRN2Q9H0D6 SET-205ENST00000409104 962 ntTSL 5 BASIC10.21□□□□□ -0.771e-9■■■■■ 30.6
XRN2Q9H0D6 ZNF331-222ENST00000514374 574 ntTSL 410.04□□□□□ -0.86e-7■■■■■ 30.6
XRN2Q9H0D6 SET-204ENST00000372692 2850 ntTSL 1 (best) BASIC10□□□□□ -0.811e-9■■■■■ 30.6
XRN2Q9H0D6 ZNF331-216ENST00000511593 1985 ntAPPRIS P1 TSL 5 BASIC8.66□□□□□ -1.026e-7■■■■■ 30.6
XRN2Q9H0D6 FAM135A-207ENST00000457062 5282 ntAPPRIS P3 TSL 1 (best) BASIC7.25□□□□□ -1.256e-10■■■■■ 30.6
XRN2Q9H0D6 ZNF331-203ENST00000449416 3817 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.266e-7■■■■■ 30.6
XRN2Q9H0D6 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC5.82□□□□□ -1.486e-10■■■■■ 30.6
XRN2Q9H0D6 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.74□□□□□ -1.656e-10■■■■■ 30.6
XRN2Q9H0D6 RNU6-8-201ENST00000365467 107 ntBASIC3.88□□□□□ -1.796e-10■■■■■ 30.6
XRN2Q9H0D6 FAM135A-204ENST00000393299 1780 ntTSL 22.89□□□□□ -1.956e-10■■■■■ 30.6
XRN2Q9H0D6 FAM135A-201ENST00000194672 5198 ntTSL 52.01□□□□□ -2.096e-10■■■■■ 30.6
XRN2Q9H0D6 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.02□□□□□ -2.256e-10■■■■■ 30.6
XRN2Q9H0D6 CHD7-204ENST00000526846 500 ntTSL 218.84■□□□□ 0.612e-6■■■■■ 30.6
XRN2Q9H0D6 SLC6A9-205ENST00000372310 3130 ntAPPRIS P1 TSL 5 BASIC13.69□□□□□ -0.223e-6■■■■■ 30.6
XRN2Q9H0D6 ST3GAL2-204ENST00000566097 904 ntTSL 232.41■■■□□ 2.781e-6■■■■■ 30.6
XRN2Q9H0D6 ST3GAL2-205ENST00000567586 557 ntTSL 430.05■■■□□ 2.41e-6■■■■■ 30.6
XRN2Q9H0D6 ST3GAL2-201ENST00000342907 4450 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.072e-10■■■■■ 30.6
XRN2Q9H0D6 HDAC4-216ENST00000544989 342 ntTSL 513.93□□□□□ -0.182e-7■■■■■ 30.5
XRN2Q9H0D6 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.182e-6■■■■■ 30.5
XRN2Q9H0D6 RNF114-208ENST00000625177 580 ntTSL 328.6■■■□□ 2.171e-13■■■■■ 30.5
XRN2Q9H0D6 RNF114-205ENST00000623732 569 ntTSL 528.25■■■□□ 2.111e-13■■■■■ 30.5
XRN2Q9H0D6 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC25.17■■□□□ 1.621e-13■■■■■ 30.5
XRN2Q9H0D6 RNF114-204ENST00000623528 624 ntTSL 323.09■■□□□ 1.291e-13■■■■■ 30.5
XRN2Q9H0D6 RNF114-206ENST00000624620 565 ntTSL 223.03■■□□□ 1.281e-13■■■■■ 30.5
XRN2Q9H0D6 RNF114-203ENST00000622999 2438 ntTSL 220.2■□□□□ 0.821e-13■■■■■ 30.5
XRN2Q9H0D6 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.561e-13■■■■■ 30.5
XRN2Q9H0D6 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.294e-10■■■■■ 30.5
XRN2Q9H0D6 SNX9-202ENST00000614703 542 ntTSL 412.09□□□□□ -0.474e-10■■■■■ 30.5
XRN2Q9H0D6 SNX9-203ENST00000614800 553 ntTSL 47.03□□□□□ -1.284e-10■■■■■ 30.5
XRN2Q9H0D6 PTDSS2-212ENST00000531520 890 ntTSL 322.28■■□□□ 1.162e-7■■■■■ 30.5
XRN2Q9H0D6 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.932e-7■■■■■ 30.5
XRN2Q9H0D6 PTDSS2-213ENST00000532614 437 ntTSL 315.7■□□□□ 0.12e-7■■■■■ 30.5
XRN2Q9H0D6 PTDSS2-205ENST00000526878 3134 ntTSL 211.34□□□□□ -0.592e-7■■■■■ 30.5
XRN2Q9H0D6 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.89■■□□□ 1.262e-9■■■■■ 30.5
XRN2Q9H0D6 CBX4-203ENST00000494546 432 ntTSL 339.46■■■■□ 3.916e-7■■■■■ 30.4
XRN2Q9H0D6 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.318e-9■■■■■ 30.4
XRN2Q9H0D6 CREB1-204ENST00000421139 713 ntTSL 520.59■□□□□ 0.898e-9■■■■■ 30.4
XRN2Q9H0D6 CREB1-206ENST00000432329 7650 ntTSL 1 (best) BASIC10.18□□□□□ -0.788e-9■■■■■ 30.4
XRN2Q9H0D6 CREB1-201ENST00000353267 7588 ntAPPRIS P1 TSL 1 (best) BASIC9.04□□□□□ -0.968e-9■■■■■ 30.4
XRN2Q9H0D6 CREB1-216ENST00000494094 580 ntTSL 27.79□□□□□ -1.168e-9■■■■■ 30.4
XRN2Q9H0D6 CREB1-211ENST00000452474 518 ntTSL 47.79□□□□□ -1.168e-9■■■■■ 30.4
XRN2Q9H0D6 CREB1-207ENST00000445803 651 ntTSL 43.13□□□□□ -1.918e-9■■■■■ 30.4
XRN2Q9H0D6 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.69■■□□□ 1.77e-7■■■■■ 30.4
XRN2Q9H0D6 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC22.29■■□□□ 1.167e-7■■■■■ 30.4
XRN2Q9H0D6 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.167e-7■■■■■ 30.4
XRN2Q9H0D6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.917e-7■■■■■ 30.4
XRN2Q9H0D6 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.71■□□□□ 0.917e-7■■■■■ 30.4
XRN2Q9H0D6 GOLGA3-204ENST00000534967 484 ntTSL 332.57■■■□□ 2.83e-11■■■■■ 30.4
XRN2Q9H0D6 GOLGA3-205ENST00000537317 298 ntTSL 318.61■□□□□ 0.573e-11■■■■■ 30.4
XRN2Q9H0D6 CHFR-219ENST00000541341 581 ntTSL 311.61□□□□□ -0.553e-11■■■■■ 30.4
XRN2Q9H0D6 SMOX-208ENST00000484515 900 ntTSL 328.91■■■□□ 2.224e-6■■■■■ 30.4
XRN2Q9H0D6 NFKBIA-205ENST00000555629 599 ntTSL 222.48■■□□□ 1.192e-7■■■■■ 30.4
XRN2Q9H0D6 GNB1-202ENST00000434686 684 ntTSL 313.36□□□□□ -0.271e-7■■■■■ 30.4
XRN2Q9H0D6 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC26.61■■□□□ 1.853e-7■■■■■ 30.3
XRN2Q9H0D6 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC25.23■■□□□ 1.633e-7■■■■■ 30.3
XRN2Q9H0D6 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.53e-7■■■■■ 30.3
XRN2Q9H0D6 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC21.92■■□□□ 1.13e-7■■■■■ 30.3
XRN2Q9H0D6 SLC2A4RG-203ENST00000474248 624 ntTSL 227.32■■□□□ 1.963e-8■■■■■ 30.3
XRN2Q9H0D6 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC21.68■■□□□ 1.062e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-205ENST00000558131 444 ntTSL 5 BASIC19.9■□□□□ 0.782e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.47■□□□□ 0.712e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-211ENST00000560881 1692 ntTSL 519.22■□□□□ 0.672e-28■■■■■ 30.3
XRN2Q9H0D6 MIR6805-201ENST00000615055 62 ntBASIC18.85■□□□□ 0.612e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-207ENST00000558815 616 ntTSL 2 BASIC18.13■□□□□ 0.492e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.42e-28■■■■■ 30.3
XRN2Q9H0D6 HNRNPC-206ENST00000553444 724 ntTSL 214.64□□□□□ -0.072e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-202ENST00000426763 5620 ntTSL 1 (best)14.32□□□□□ -0.122e-28■■■■■ 30.3
XRN2Q9H0D6 HNRNPC-204ENST00000449098 1599 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.122e-28■■■■■ 30.3
XRN2Q9H0D6 HNRNPC-227ENST00000556897 1252 ntAPPRIS P2 TSL 1 (best) BASIC11.23□□□□□ -0.612e-28■■■■■ 30.3
XRN2Q9H0D6 RPL28-201ENST00000344063 4796 ntAPPRIS P1 TSL 1 (best) BASIC10.84□□□□□ -0.672e-28■■■■■ 30.3
XRN2Q9H0D6 HNRNPC-229ENST00000557157 698 ntTSL 54.56□□□□□ -1.682e-28■■■■■ 30.3
XRN2Q9H0D6 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.852e-28■■■■■ 30.3
XRN2Q9H0D6 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.68■□□□□ 0.426e-8■■■■■ 30.3
XRN2Q9H0D6 C2orf48-202ENST00000619640 480 ntTSL 1 (best)17.64■□□□□ 0.416e-8■■■■■ 30.3
XRN2Q9H0D6 AC007240.1-201ENST00000641498 1996 ntAPPRIS P1 BASIC14.84□□□□□ -0.036e-8■■■■■ 30.3
XRN2Q9H0D6 NDST1-206ENST00000522491 777 ntTSL 224.3■■□□□ 1.482e-6■■■■■ 30.2
XRN2Q9H0D6 NDST1-204ENST00000519157 576 ntTSL 523.91■■□□□ 1.422e-6■■■■■ 30.2
XRN2Q9H0D6 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.34e-6■■■■■ 30.2
XRN2Q9H0D6 NOP53-207ENST00000598681 1358 ntTSL 525.64■■□□□ 1.694e-6■■■■■ 30.2
XRN2Q9H0D6 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.355e-8■■■■■ 30.2
XRN2Q9H0D6 NOP53-212ENST00000600410 4185 ntTSL 215.59■□□□□ 0.094e-6■■■■■ 30.2
XRN2Q9H0D6 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.055e-8■■■■■ 30.2
XRN2Q9H0D6 PLIN2-207ENST00000475923 1000 ntTSL 39.58□□□□□ -0.882e-12■■■■■ 30.2
XRN2Q9H0D6 PLIN2-203ENST00000380465 631 ntTSL 2 BASIC8.78□□□□□ -12e-12■■■■■ 30.2
XRN2Q9H0D6 PLIN2-204ENST00000434144 623 ntTSL 36.91□□□□□ -1.32e-12■■■■■ 30.2
XRN2Q9H0D6 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.77□□□□□ -1.492e-12■■■■■ 30.2
XRN2Q9H0D6 PLIN2-206ENST00000472715 801 ntTSL 24.97□□□□□ -1.612e-12■■■■■ 30.2
Retrieved 100 of 21,068 protein–RNA pairs in 181.1 ms