RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 NISCHQ9Y2I1 1504 aa28.81■■■□□ 2.2
HDAC4-216ENST00000544989 CCDC180Q9P1Z9 1646 aa25.7■■□□□ 1.71
HDAC4-216ENST00000544989 ABCC9O60706 1549 aa25.32■■□□□ 1.64
HDAC4-216ENST00000544989 DNAJC5BQ9UF47 199 aa24.34■■□□□ 1.49
HDAC4-216ENST00000544989 RB1CC1Q8TDY2 1594 aa24.29■■□□□ 1.48
HDAC4-216ENST00000544989 NACADO15069 1562 aa24.24■■□□□ 1.47
HDAC4-216ENST00000544989 DCAF8L2P0C7V8 631 aa24.12■■□□□ 1.45
HDAC4-216ENST00000544989 MYO15BQ96JP2 1530 aa24.09■■□□□ 1.45
HDAC4-216ENST00000544989 ZCCHC6Q5VYS8 1495 aaKnown RBP23.97■■□□□ 1.43
HDAC4-216ENST00000544989 DCAF1Q9Y4B6 1507 aa23.9■■□□□ 1.42
HDAC4-216ENST00000544989 UNC13AQ9UPW8 1703 aa23.59■■□□□ 1.37
HDAC4-216ENST00000544989 PABPN1Q86U42 306 aaKnown RBP eCLIP23.54■■□□□ 1.36
HDAC4-216ENST00000544989 BICRAQ9NZM4 1560 aa23.46■■□□□ 1.35
HDAC4-216ENST00000544989 SHROOM4Q9ULL8 1493 aa23.39■■□□□ 1.34
HDAC4-216ENST00000544989 SCRIBQ14160 1630 aa23.37■■□□□ 1.33
HDAC4-216ENST00000544989 CC2D2AQ9P2K1 1620 aa22.94■■□□□ 1.26
HDAC4-216ENST00000544989 CECR2Q9BXF3 1484 aa22.93■■□□□ 1.26
HDAC4-216ENST00000544989 EIF4G1Q04637 1599 aaKnown RBP22.9■■□□□ 1.26
HDAC4-216ENST00000544989 DNAJC5Q9H3Z4 198 aa22.79■■□□□ 1.24
HDAC4-216ENST00000544989 BAZ1AQ9NRL2 1556 aaPredicted RBP22.38■■□□□ 1.17
HDAC4-216ENST00000544989 SMARCA4P51532 1647 aa22.37■■□□□ 1.17
HDAC4-216ENST00000544989 NCAPD3P42695 1498 aa22.35■■□□□ 1.17
HDAC4-216ENST00000544989 SMARCA2P51531 1590 aa22.33■■□□□ 1.16
HDAC4-216ENST00000544989 ATAD2BQ9ULI0 1458 aa22.31■■□□□ 1.16
HDAC4-216ENST00000544989 HMGXB3Q12766 1538 aa22.24■■□□□ 1.15
HDAC4-216ENST00000544989 CUX2O14529 1486 aa22.2■■□□□ 1.14
HDAC4-216ENST00000544989 PEG3Q9GZU2 1588 aa22.2■■□□□ 1.14
HDAC4-216ENST00000544989 MROH2BQ7Z745 1585 aa22.15■■□□□ 1.14
HDAC4-216ENST00000544989 BAZ1BQ9UIG0 1483 aaKnown RBP22.14■■□□□ 1.13
HDAC4-216ENST00000544989 RSF1Q96T23 1441 aaPredicted RBP21.89■■□□□ 1.09
HDAC4-216ENST00000544989 ERCC6Q03468 1493 aa21.88■■□□□ 1.09
HDAC4-216ENST00000544989 WIZO95785 1651 aa21.88■■□□□ 1.09
HDAC4-216ENST00000544989 LAMC3Q9Y6N6 1575 aa21.79■■□□□ 1.08
HDAC4-216ENST00000544989 NESP48681 1621 aa21.75■■□□□ 1.07
HDAC4-216ENST00000544989 TOP2AP11388 1531 aaKnown RBP21.72■■□□□ 1.07
HDAC4-216ENST00000544989 CADPSQ9ULU8 1353 aa21.7■■□□□ 1.06
HDAC4-216ENST00000544989 PDS5BQ9NTI5 1447 aa21.69■■□□□ 1.06
HDAC4-216ENST00000544989 THOC2Q8NI27 1593 aaKnown RBP21.62■■□□□ 1.05
HDAC4-216ENST00000544989 CFTRP13569 1480 aa21.52■■□□□ 1.04
HDAC4-216ENST00000544989 KIF21AQ7Z4S6 1674 aa21.5■■□□□ 1.03
HDAC4-216ENST00000544989 CCDC88BA6NC98 1476 aa21.44■■□□□ 1.02
HDAC4-216ENST00000544989 MRC2Q9UBG0 1479 aa21.43■■□□□ 1.02
HDAC4-216ENST00000544989 CEP164Q9UPV0 1460 aa21.43■■□□□ 1.02
HDAC4-216ENST00000544989 FANCD2Q9BXW9 1451 aa21.42■■□□□ 1.02
HDAC4-216ENST00000544989 WDR62O43379 1518 aa21.34■■□□□ 1.01
HDAC4-216ENST00000544989 PRDM2Q13029 1718 aa21.31■■□□□ 1
HDAC4-216ENST00000544989 TRIM41Q8WV44 630 aa21.29■■□□□ 1
HDAC4-216ENST00000544989 SUPT5HO00267 1087 aaKnown RBP21.19■□□□□ 0.98
HDAC4-216ENST00000544989 URB2Q14146 1524 aaKnown RBP21.17■□□□□ 0.98
HDAC4-216ENST00000544989 ABCC8Q09428 1581 aa21.14■□□□□ 0.98
HDAC4-216ENST00000544989 TOPBP1Q92547 1522 aa21.04■□□□□ 0.96
HDAC4-216ENST00000544989 DNMBPQ6XZF7 1577 aa21.03■□□□□ 0.96
HDAC4-216ENST00000544989 OSCARQ8IYS5 282 aa21.01■□□□□ 0.95
HDAC4-216ENST00000544989 IFT140Q96RY7 1462 aa21.01■□□□□ 0.95
HDAC4-216ENST00000544989 POLA1P09884 1462 aaPredicted RBP20.86■□□□□ 0.93
HDAC4-216ENST00000544989 ZNF608Q9ULD9 1512 aaPredicted RBP20.82■□□□□ 0.92
HDAC4-216ENST00000544989 RIMBP3CA6NJZ7 1639 aa20.82■□□□□ 0.92
HDAC4-216ENST00000544989 RIMBP3BA6NNM3 1639 aa20.82■□□□□ 0.92
HDAC4-216ENST00000544989 RIMBP3Q9UFD9 1639 aa20.82■□□□□ 0.92
HDAC4-216ENST00000544989 CUX1P39880 1505 aa20.8■□□□□ 0.92
HDAC4-216ENST00000544989 TARBP1Q13395 1621 aaKnown RBP20.8■□□□□ 0.92
HDAC4-216ENST00000544989 SOGA1O94964 1423 aa20.79■□□□□ 0.92
HDAC4-216ENST00000544989 FGD5Q6ZNL6 1462 aa20.77■□□□□ 0.92
HDAC4-216ENST00000544989 EIF4G3O43432 1585 aaKnown RBP20.76■□□□□ 0.91
HDAC4-216ENST00000544989 WDR97A6NE52 1622 aa20.75■□□□□ 0.91
HDAC4-216ENST00000544989 RAD54L2Q9Y4B4 1467 aa20.73■□□□□ 0.91
HDAC4-216ENST00000544989 AQRO60306 1485 aaKnown RBP eCLIP20.71■□□□□ 0.91
HDAC4-216ENST00000544989 ARHGEF11O15085 1522 aa20.7■□□□□ 0.9
HDAC4-216ENST00000544989 WRNQ14191 1432 aaPredicted RBP eCLIP20.67■□□□□ 0.9
HDAC4-216ENST00000544989 TDRD9Q8NDG6 1382 aaKnown RBP20.66■□□□□ 0.9
HDAC4-216ENST00000544989 TOP2BQ02880 1626 aa20.62■□□□□ 0.89
HDAC4-216ENST00000544989 ABCA10Q8WWZ4 1543 aa20.61■□□□□ 0.89
HDAC4-216ENST00000544989 BIVM-ERCC5R4GMW8 1640 aa20.6■□□□□ 0.89
HDAC4-216ENST00000544989 GRIN2BQ13224 1484 aa20.59■□□□□ 0.89
HDAC4-216ENST00000544989 MAGI1Q96QZ7 1491 aaPredicted RBP20.56■□□□□ 0.88
HDAC4-216ENST00000544989 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
HDAC4-216ENST00000544989 SYNJ1O43426 1573 aa20.55■□□□□ 0.88
HDAC4-216ENST00000544989 FBLN2P98095 1184 aa20.53■□□□□ 0.88
HDAC4-216ENST00000544989 SNAPC4Q5SXM2 1469 aa20.53■□□□□ 0.88
HDAC4-216ENST00000544989 ABCA5Q8WWZ7 1642 aa20.49■□□□□ 0.87
HDAC4-216ENST00000544989 CHMP7Q8WUX9 453 aaPredicted RBP20.49■□□□□ 0.87
HDAC4-216ENST00000544989 CHD1O14646 1710 aa20.49■□□□□ 0.87
HDAC4-216ENST00000544989 CYB5RLQ6IPT4 315 aa20.47■□□□□ 0.87
HDAC4-216ENST00000544989 SYNJ2O15056 1496 aa20.47■□□□□ 0.87
HDAC4-216ENST00000544989 ARAP1Q96P48 1450 aa20.46■□□□□ 0.87
HDAC4-216ENST00000544989 PBRM1Q86U86 1689 aa20.45■□□□□ 0.86
HDAC4-216ENST00000544989 ERICH3Q5RHP9 1530 aa20.37■□□□□ 0.85
HDAC4-216ENST00000544989 FHAD1B1AJZ9 1412 aa20.34■□□□□ 0.85
HDAC4-216ENST00000544989 TRHP20396 242 aaPredicted RBP20.33■□□□□ 0.85
HDAC4-216ENST00000544989 ADAMTS12P58397 1594 aa20.32■□□□□ 0.84
HDAC4-216ENST00000544989 CLASP1Q7Z460 1538 aa20.32■□□□□ 0.84
HDAC4-216ENST00000544989 GRIN2AQ12879 1464 aa20.3■□□□□ 0.84
HDAC4-216ENST00000544989 KIF27Q86VH2 1401 aa20.28■□□□□ 0.84
HDAC4-216ENST00000544989 NUP160Q12769 1436 aa20.23■□□□□ 0.83
HDAC4-216ENST00000544989 IGF1RP08069 1367 aa20.18■□□□□ 0.82
HDAC4-216ENST00000544989 CEP170Q5SW79 1584 aa20.15■□□□□ 0.82
HDAC4-216ENST00000544989 CUL7Q14999 1698 aa20.15■□□□□ 0.82
HDAC4-216ENST00000544989 AEBP2Q6ZN18 517 aaPredicted RBP20.12■□□□□ 0.81
HDAC4-216ENST00000544989 CARMIL1Q5VZK9 1371 aa20.08■□□□□ 0.8
HDAC4-216ENST00000544989 SHROOM2Q13796 1616 aa20.05■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms