Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MUTYH-220ENST00000475516 1677 ntTSL 1 (best)21.45■■□□□ 1.023e-6■■■■□ 19.7
YBX3P16989 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.883e-6■■■■□ 19.7
YBX3P16989 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC20.25■□□□□ 0.833e-6■■■■□ 19.7
YBX3P16989 MUTYH-235ENST00000529892 673 ntTSL 520.13■□□□□ 0.813e-6■■■■□ 19.7
YBX3P16989 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC19.97■□□□□ 0.793e-6■■■■□ 19.7
YBX3P16989 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.753e-6■■■■□ 19.7
YBX3P16989 MUTYH-226ENST00000482094 920 ntTSL 219.28■□□□□ 0.683e-6■■■■□ 19.7
YBX3P16989 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.643e-6■■■■□ 19.7
YBX3P16989 MUTYH-225ENST00000481571 1742 ntTSL 1 (best)18.59■□□□□ 0.573e-6■■■■□ 19.7
YBX3P16989 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC18.59■□□□□ 0.573e-6■■■■□ 19.7
YBX3P16989 MUTYH-216ENST00000467459 1017 ntTSL 318.53■□□□□ 0.563e-6■■■■□ 19.7
YBX3P16989 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC17.96■□□□□ 0.473e-6■■■■□ 19.7
YBX3P16989 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC17.86■□□□□ 0.453e-6■■■■□ 19.7
YBX3P16989 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.323e-6■■■■□ 19.7
YBX3P16989 MUTYH-236ENST00000529984 1029 ntTSL 2 BASIC16.35■□□□□ 0.213e-6■■■■□ 19.7
YBX3P16989 GTPBP8-206ENST00000485330 1635 ntTSL 215.99■□□□□ 0.153e-6■■■■□ 19.7
YBX3P16989 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC15.97■□□□□ 0.153e-6■■■■□ 19.7
YBX3P16989 MUTYH-238ENST00000533178 1225 ntTSL 515.57■□□□□ 0.083e-6■■■■□ 19.7
YBX3P16989 CNKSR3-204ENST00000479339 2023 ntTSL 1 (best) BASIC15.56■□□□□ 0.083e-6■■■■□ 19.7
YBX3P16989 GALNT7-201ENST00000265000 4307 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.073e-6■■■■□ 19.7
YBX3P16989 LRRC8A-203ENST00000372600 4355 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.043e-6■■■■□ 19.7
YBX3P16989 TGFBR3-205ENST00000468996 569 ntTSL 414.31□□□□□ -0.123e-6■■■■□ 19.7
YBX3P16989 LRRC8A-201ENST00000259324 4619 ntAPPRIS P1 TSL 2 BASIC12.79□□□□□ -0.363e-6■■■■□ 19.7
YBX3P16989 LRRC8A-202ENST00000372599 4161 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.43e-6■■■■□ 19.7
YBX3P16989 SMIM10L1-201ENST00000622602 4795 ntAPPRIS P1 BASIC12.08□□□□□ -0.483e-6■■■■□ 19.7
YBX3P16989 GTPBP8-207ENST00000488781 715 ntTSL 311.76□□□□□ -0.533e-6■■■■□ 19.7
YBX3P16989 AC078845.1-201ENST00000445293 889 ntTSL 5 BASIC10.06□□□□□ -0.83e-6■■■■□ 19.7
YBX3P16989 CNKSR3-202ENST00000433165 2347 ntTSL 1 (best)9.11□□□□□ -0.953e-6■■■■□ 19.7
YBX3P16989 MAP3K20-201ENST00000338983 7179 ntTSL 1 (best) BASIC8.3□□□□□ -1.083e-6■■■■□ 19.7
YBX3P16989 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.293e-6■■■■□ 19.7
YBX3P16989 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC6.89□□□□□ -1.313e-6■■■■□ 19.7
YBX3P16989 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.343e-6■■■■□ 19.7
YBX3P16989 CNKSR3-203ENST00000454664 776 ntTSL 56.02□□□□□ -1.453e-6■■■■□ 19.7
YBX3P16989 GALNT7-207ENST00000515862 3569 ntTSL 25.97□□□□□ -1.453e-6■■■■□ 19.7
YBX3P16989 CNKSR3-201ENST00000424998 536 ntTSL 55.07□□□□□ -1.63e-6■■■■□ 19.7
YBX3P16989 CTSH-202ENST00000525807 1122 ntTSL 525.28■■□□□ 1.642e-6■■■■□ 19.7
YBX3P16989 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.642e-6■■■■□ 19.7
YBX3P16989 CTSH-213ENST00000533777 2101 ntTSL 1 (best)17.83■□□□□ 0.442e-6■■■■□ 19.7
YBX3P16989 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.68■■■□□ 2.53e-11■■■■□ 19.7
YBX3P16989 POLR2F-212ENST00000492213 550 ntTSL 427.68■■■□□ 2.023e-11■■■■□ 19.7
YBX3P16989 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC27.61■■■□□ 2.013e-11■■■■□ 19.7
YBX3P16989 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC27.61■■■□□ 2.013e-11■■■■□ 19.7
YBX3P16989 POLR2F-206ENST00000443002 1890 ntTSL 222.96■■□□□ 1.273e-11■■■■□ 19.7
YBX3P16989 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.093e-11■■■■□ 19.7
YBX3P16989 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC20.43■□□□□ 0.863e-11■■■■□ 19.7
YBX3P16989 POLR2F-209ENST00000483713 615 ntTSL 319.32■□□□□ 0.683e-11■■■■□ 19.7
YBX3P16989 POLR2F-210ENST00000484894 551 ntTSL 417.92■□□□□ 0.463e-11■■■■□ 19.7
YBX3P16989 POLR2F-213ENST00000606538 760 ntTSL 2 BASIC16.63■□□□□ 0.253e-11■■■■□ 19.7
YBX3P16989 POLR2F-202ENST00000405557 560 ntTSL 5 BASIC16.63■□□□□ 0.253e-11■■■■□ 19.7
YBX3P16989 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC27.14■■□□□ 1.945e-6■■■■□ 19.7
YBX3P16989 NUDT22-206ENST00000535000 1071 ntTSL 227.14■■□□□ 1.945e-6■■■■□ 19.7
YBX3P16989 NUDT22-210ENST00000543358 659 ntTSL 326.81■■□□□ 1.885e-6■■■■□ 19.7
YBX3P16989 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC26.69■■□□□ 1.865e-6■■■■□ 19.7
YBX3P16989 NUDT22-203ENST00000428347 876 ntAPPRIS ALT2 TSL 524.99■■□□□ 1.595e-6■■■■□ 19.7
YBX3P16989 NUDT22-208ENST00000537707 986 ntTSL 1 (best)24.46■■□□□ 1.515e-6■■■■□ 19.7
YBX3P16989 NUDT22-209ENST00000539325 746 ntAPPRIS ALT2 TSL 221.01■□□□□ 0.955e-6■■■■□ 19.7
YBX3P16989 NUDT22-202ENST00000422364 2055 ntTSL 1 (best)20.81■□□□□ 0.925e-6■■■■□ 19.7
YBX3P16989 AAED1-204ENST00000464512 463 ntTSL 223.47■■□□□ 1.355e-8■■■■□ 19.7
YBX3P16989 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.65e-8■■■■□ 19.7
YBX3P16989 AAED1-203ENST00000446045 2723 ntTSL 1 (best)11.37□□□□□ -0.595e-8■■■■□ 19.7
YBX3P16989 AAED1-202ENST00000411939 2514 ntTSL 38.31□□□□□ -1.085e-8■■■■□ 19.7
YBX3P16989 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC30.05■■■□□ 2.43e-6■■■■□ 19.7
YBX3P16989 ZBTB21-208ENST00000465968 631 ntTSL 329.65■■■□□ 2.343e-6■■■■□ 19.7
YBX3P16989 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC29.19■■■□□ 2.263e-6■■■■□ 19.7
YBX3P16989 RUNX1-204ENST00000399237 822 ntTSL 528.7■■■□□ 2.183e-6■■■■□ 19.7
YBX3P16989 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.183e-6■■■■□ 19.7
YBX3P16989 ZBTB21-207ENST00000449949 463 ntTSL 1 (best)27.83■■■□□ 2.053e-6■■■■□ 19.7
YBX3P16989 POLE4-206ENST00000485527 405 ntTSL 225.77■■□□□ 1.723e-6■■■■□ 19.7
YBX3P16989 POLE4-202ENST00000459636 760 ntTSL 325.34■■□□□ 1.653e-6■■■■□ 19.7
YBX3P16989 F2R-202ENST00000505600 442 ntTSL 2 BASIC25.26■■□□□ 1.633e-6■■■■□ 19.7
YBX3P16989 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.623e-6■■■■□ 19.7
YBX3P16989 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC25.17■■□□□ 1.621e-11■■■■□ 19.7
YBX3P16989 RUNX1-216ENST00000482318 1710 ntTSL 1 (best)25.02■■□□□ 1.63e-6■■■■□ 19.7
YBX3P16989 FLII-210ENST00000488221 859 ntTSL 524.7■■□□□ 1.543e-6■■■■□ 19.7
YBX3P16989 RUNX1-208ENST00000455571 610 ntTSL 323.75■■□□□ 1.393e-6■■■■□ 19.7
YBX3P16989 ZBTB21-202ENST00000398497 555 ntTSL 1 (best)23.72■■□□□ 1.393e-6■■■■□ 19.7
YBX3P16989 MCRS1-208ENST00000548646 608 ntTSL 321.97■■□□□ 1.111e-11■■■■□ 19.7
YBX3P16989 MCRS1-204ENST00000547182 724 ntTSL 321.97■■□□□ 1.111e-11■■■■□ 19.7
YBX3P16989 MCRS1-212ENST00000551598 636 ntTSL 521.97■■□□□ 1.111e-11■■■■□ 19.7
YBX3P16989 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.83e-6■■■■□ 19.7
YBX3P16989 AC092139.2-201ENST00000563750 754 ntTSL 3 BASIC19.23■□□□□ 0.673e-6■■■■□ 19.7
YBX3P16989 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC18.98■□□□□ 0.633e-6■■■■□ 19.7
YBX3P16989 NPC1-203ENST00000586150 571 ntTSL 318.62■□□□□ 0.573e-6■■■■□ 19.7
YBX3P16989 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.563e-6■■■■□ 19.7
YBX3P16989 FLII-211ENST00000488932 838 ntTSL 318.54■□□□□ 0.563e-6■■■■□ 19.7
YBX3P16989 FLII-203ENST00000461110 1032 ntTSL 518.54■□□□□ 0.563e-6■■■■□ 19.7
YBX3P16989 NPC1-212ENST00000591107 890 ntTSL 318.34■□□□□ 0.533e-6■■■■□ 19.7
YBX3P16989 MCRS1-215ENST00000552596 669 ntTSL 218.18■□□□□ 0.51e-11■■■■□ 19.7
YBX3P16989 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.92■□□□□ 0.463e-6■■■■□ 19.7
YBX3P16989 FLII-219ENST00000577626 557 ntTSL 417.86■□□□□ 0.453e-6■■■■□ 19.7
YBX3P16989 NPC1-207ENST00000588867 2000 ntTSL 517.42■□□□□ 0.383e-6■■■■□ 19.7
YBX3P16989 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.41■□□□□ 0.383e-6■■■■□ 19.7
YBX3P16989 MCRS1-203ENST00000546244 1686 ntTSL 1 (best) BASIC17.35■□□□□ 0.371e-11■■■■□ 19.7
YBX3P16989 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.373e-6■■■■□ 19.7
YBX3P16989 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.273e-6■■■■□ 19.7
YBX3P16989 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.243e-6■■■■□ 19.7
YBX3P16989 MCRS1-201ENST00000343810 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.211e-11■■■■□ 19.7
YBX3P16989 MCRS1-213ENST00000551625 2450 ntTSL 1 (best)16.22■□□□□ 0.191e-11■■■■□ 19.7
YBX3P16989 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.11■□□□□ 0.173e-6■■■■□ 19.7
YBX3P16989 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.123e-6■■■■□ 19.7
Retrieved 100 of 29,075 protein–RNA pairs in 720.4 ms