RNA–Protein interactions for RNA: ENST00000588867.1

NPC1-207, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 5

Gene NPC1, Length 2,000 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-207ENST00000588867 NISCHQ9Y2I1 1504 aa33.64■■■□□ 2.98
NPC1-207ENST00000588867 CCDC180Q9P1Z9 1646 aa29.52■■■□□ 2.32
NPC1-207ENST00000588867 ABCC9O60706 1549 aa28.36■■■□□ 2.13
NPC1-207ENST00000588867 ZCCHC6Q5VYS8 1495 aaKnown RBP28.15■■■□□ 2.1
NPC1-207ENST00000588867 DCAF8L2P0C7V8 631 aa28.08■■■□□ 2.08
NPC1-207ENST00000588867 DCAF1Q9Y4B6 1507 aa27.78■■■□□ 2.04
NPC1-207ENST00000588867 NACADO15069 1562 aa27.61■■■□□ 2.01
NPC1-207ENST00000588867 MYO15BQ96JP2 1530 aa27.61■■■□□ 2.01
NPC1-207ENST00000588867 RB1CC1Q8TDY2 1594 aa27.49■■□□□ 1.99
NPC1-207ENST00000588867 SHROOM4Q9ULL8 1493 aa27.23■■□□□ 1.95
NPC1-207ENST00000588867 SCRIBQ14160 1630 aa27.13■■□□□ 1.93
NPC1-207ENST00000588867 UNC13AQ9UPW8 1703 aa26.9■■□□□ 1.9
NPC1-207ENST00000588867 PABPN1Q86U42 306 aaKnown RBP eCLIP26.69■■□□□ 1.86
NPC1-207ENST00000588867 BICRAQ9NZM4 1560 aa26.64■■□□□ 1.85
NPC1-207ENST00000588867 CECR2Q9BXF3 1484 aa26.2■■□□□ 1.78
NPC1-207ENST00000588867 BAZ1AQ9NRL2 1556 aaPredicted RBP26.02■■□□□ 1.76
NPC1-207ENST00000588867 SUPT5HO00267 1087 aaKnown RBP26.02■■□□□ 1.76
NPC1-207ENST00000588867 MROH2BQ7Z745 1585 aa25.98■■□□□ 1.75
NPC1-207ENST00000588867 SMARCA4P51532 1647 aa25.95■■□□□ 1.74
NPC1-207ENST00000588867 RSF1Q96T23 1441 aaPredicted RBP25.94■■□□□ 1.74
NPC1-207ENST00000588867 EIF4G1Q04637 1599 aaKnown RBP25.89■■□□□ 1.73
NPC1-207ENST00000588867 WIZO95785 1651 aa25.77■■□□□ 1.72
NPC1-207ENST00000588867 ATAD2BQ9ULI0 1458 aa25.64■■□□□ 1.7
NPC1-207ENST00000588867 CC2D2AQ9P2K1 1620 aa25.62■■□□□ 1.69
NPC1-207ENST00000588867 PEG3Q9GZU2 1588 aa25.62■■□□□ 1.69
NPC1-207ENST00000588867 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
NPC1-207ENST00000588867 BAZ1BQ9UIG0 1483 aaKnown RBP25.49■■□□□ 1.67
NPC1-207ENST00000588867 NCAPD3P42695 1498 aa25.49■■□□□ 1.67
NPC1-207ENST00000588867 TOP2AP11388 1531 aaKnown RBP25.46■■□□□ 1.67
NPC1-207ENST00000588867 DNAJC5BQ9UF47 199 aa25.41■■□□□ 1.66
NPC1-207ENST00000588867 HMGXB3Q12766 1538 aa25.39■■□□□ 1.66
NPC1-207ENST00000588867 CCDC88BA6NC98 1476 aa25.22■■□□□ 1.63
NPC1-207ENST00000588867 CADPSQ9ULU8 1353 aa24.82■■□□□ 1.56
NPC1-207ENST00000588867 CFTRP13569 1480 aa24.8■■□□□ 1.56
NPC1-207ENST00000588867 NESP48681 1621 aa24.75■■□□□ 1.55
NPC1-207ENST00000588867 LAMC3Q9Y6N6 1575 aa24.69■■□□□ 1.54
NPC1-207ENST00000588867 PRDM2Q13029 1718 aa24.64■■□□□ 1.53
NPC1-207ENST00000588867 CHIC1Q5VXU3 224 aa24.63■■□□□ 1.53
NPC1-207ENST00000588867 ABCC8Q09428 1581 aa24.56■■□□□ 1.52
NPC1-207ENST00000588867 FANCD2Q9BXW9 1451 aa24.55■■□□□ 1.52
NPC1-207ENST00000588867 PDS5BQ9NTI5 1447 aa24.55■■□□□ 1.52
NPC1-207ENST00000588867 TRIM41Q8WV44 630 aa24.49■■□□□ 1.51
NPC1-207ENST00000588867 WRNQ14191 1432 aaPredicted RBP eCLIP24.45■■□□□ 1.5
NPC1-207ENST00000588867 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
NPC1-207ENST00000588867 KIF21AQ7Z4S6 1674 aa24.43■■□□□ 1.5
NPC1-207ENST00000588867 ERCC6Q03468 1493 aa24.37■■□□□ 1.49
NPC1-207ENST00000588867 SYNJ1O43426 1573 aa24.34■■□□□ 1.49
NPC1-207ENST00000588867 CUX1P39880 1505 aa24.32■■□□□ 1.48
NPC1-207ENST00000588867 TOP2BQ02880 1626 aa24.28■■□□□ 1.48
NPC1-207ENST00000588867 URB2Q14146 1524 aaKnown RBP24.25■■□□□ 1.47
NPC1-207ENST00000588867 BIVM-ERCC5R4GMW8 1640 aa24.25■■□□□ 1.47
NPC1-207ENST00000588867 DNMBPQ6XZF7 1577 aa24.23■■□□□ 1.47
NPC1-207ENST00000588867 MRC2Q9UBG0 1479 aa24.23■■□□□ 1.47
NPC1-207ENST00000588867 TOPBP1Q92547 1522 aa24.23■■□□□ 1.47
NPC1-207ENST00000588867 FGD5Q6ZNL6 1462 aa24.14■■□□□ 1.45
NPC1-207ENST00000588867 THOC2Q8NI27 1593 aaKnown RBP24.11■■□□□ 1.45
NPC1-207ENST00000588867 WDR62O43379 1518 aa24.1■■□□□ 1.45
NPC1-207ENST00000588867 POLA1P09884 1462 aaPredicted RBP24.07■■□□□ 1.44
NPC1-207ENST00000588867 FAM9AQ8IZU1 332 aaPredicted RBP24.05■■□□□ 1.44
NPC1-207ENST00000588867 SOGA1O94964 1423 aa24.03■■□□□ 1.44
NPC1-207ENST00000588867 RAD54L2Q9Y4B4 1467 aa24.02■■□□□ 1.44
NPC1-207ENST00000588867 RUSC2Q8N2Y8 1516 aa23.95■■□□□ 1.42
NPC1-207ENST00000588867 CUX2O14529 1486 aa23.94■■□□□ 1.42
NPC1-207ENST00000588867 ABCA10Q8WWZ4 1543 aa23.89■■□□□ 1.41
NPC1-207ENST00000588867 KIF27Q86VH2 1401 aa23.88■■□□□ 1.41
NPC1-207ENST00000588867 TARBP1Q13395 1621 aaKnown RBP23.88■■□□□ 1.41
NPC1-207ENST00000588867 IFT140Q96RY7 1462 aa23.87■■□□□ 1.41
NPC1-207ENST00000588867 EEA1Q15075 1411 aa23.86■■□□□ 1.41
NPC1-207ENST00000588867 TDRD9Q8NDG6 1382 aaKnown RBP23.84■■□□□ 1.41
NPC1-207ENST00000588867 CSRNP3Q8WYN3 585 aa23.83■■□□□ 1.41
NPC1-207ENST00000588867 WDR97A6NE52 1622 aa23.83■■□□□ 1.41
NPC1-207ENST00000588867 ZNF608Q9ULD9 1512 aaPredicted RBP23.76■■□□□ 1.39
NPC1-207ENST00000588867 EHMT2Q96KQ7 1210 aa23.76■■□□□ 1.39
NPC1-207ENST00000588867 AQRO60306 1485 aaKnown RBP eCLIP23.75■■□□□ 1.39
NPC1-207ENST00000588867 GAPVD1Q14C86 1478 aa23.74■■□□□ 1.39
NPC1-207ENST00000588867 ABCA5Q8WWZ7 1642 aa23.72■■□□□ 1.39
NPC1-207ENST00000588867 LOC105371045A0A1W2PR82 267 aa23.71■■□□□ 1.39
NPC1-207ENST00000588867 IGF1RP08069 1367 aa23.7■■□□□ 1.39
NPC1-207ENST00000588867 EIF4G3O43432 1585 aaKnown RBP23.66■■□□□ 1.38
NPC1-207ENST00000588867 PBRM1Q86U86 1689 aa23.62■■□□□ 1.37
NPC1-207ENST00000588867 GRIN2BQ13224 1484 aa23.61■■□□□ 1.37
NPC1-207ENST00000588867 ERICH3Q5RHP9 1530 aa23.61■■□□□ 1.37
NPC1-207ENST00000588867 CARMIL1Q5VZK9 1371 aa23.6■■□□□ 1.37
NPC1-207ENST00000588867 PRXQ9BXM0 1461 aa23.58■■□□□ 1.36
NPC1-207ENST00000588867 KIF21BO75037 1637 aa23.56■■□□□ 1.36
NPC1-207ENST00000588867 CUL7Q14999 1698 aa23.54■■□□□ 1.36
NPC1-207ENST00000588867 RAPGEF2Q9Y4G8 1499 aa23.53■■□□□ 1.36
NPC1-207ENST00000588867 UBTFP17480 764 aaKnown RBP23.53■■□□□ 1.36
NPC1-207ENST00000588867 GOLGA3Q08378 1498 aa23.52■■□□□ 1.36
NPC1-207ENST00000588867 SNAPC4Q5SXM2 1469 aa23.51■■□□□ 1.35
NPC1-207ENST00000588867 FHAD1B1AJZ9 1412 aa23.46■■□□□ 1.35
NPC1-207ENST00000588867 MAGI1Q96QZ7 1491 aaPredicted RBP23.45■■□□□ 1.34
NPC1-207ENST00000588867 ADAMTS12P58397 1594 aa23.45■■□□□ 1.34
NPC1-207ENST00000588867 FBLN2P98095 1184 aa23.42■■□□□ 1.34
NPC1-207ENST00000588867 CHMP7Q8WUX9 453 aaPredicted RBP23.4■■□□□ 1.34
NPC1-207ENST00000588867 TNIKQ9UKE5 1360 aa23.37■■□□□ 1.33
NPC1-207ENST00000588867 SYNJ2O15056 1496 aa23.37■■□□□ 1.33
NPC1-207ENST00000588867 GRIN2AQ12879 1464 aa23.32■■□□□ 1.32
NPC1-207ENST00000588867 RANGAP1P46060 587 aaPredicted RBP23.31■■□□□ 1.32
NPC1-207ENST00000588867 CHD1O14646 1710 aa23.24■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms