RNA–Protein interactions for RNA: ENST00000433165.6

CNKSR3-202, Transcript of CNKSR family member 3, humanhuman

TSL 1 (best)

Gene CNKSR3, Length 2,347 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3-202ENST00000433165 NISCHQ9Y2I1 1504 aa17.1■□□□□ 0.33
CNKSR3-202ENST00000433165 CCDC180Q9P1Z9 1646 aa15.37■□□□□ 0.05
CNKSR3-202ENST00000433165 ABCC9O60706 1549 aa14.95□□□□□ -0.02
CNKSR3-202ENST00000433165 RB1CC1Q8TDY2 1594 aa14.49□□□□□ -0.09
CNKSR3-202ENST00000433165 NACADO15069 1562 aa14.45□□□□□ -0.1
CNKSR3-202ENST00000433165 MYO15BQ96JP2 1530 aa14.37□□□□□ -0.11
CNKSR3-202ENST00000433165 DCAF1Q9Y4B6 1507 aa14.25□□□□□ -0.13
CNKSR3-202ENST00000433165 ZCCHC6Q5VYS8 1495 aaKnown RBP14.24□□□□□ -0.13
CNKSR3-202ENST00000433165 DCAF8L2P0C7V8 631 aa14.21□□□□□ -0.13
CNKSR3-202ENST00000433165 UNC13AQ9UPW8 1703 aa14.05□□□□□ -0.16
CNKSR3-202ENST00000433165 SHROOM4Q9ULL8 1493 aa14□□□□□ -0.17
CNKSR3-202ENST00000433165 BICRAQ9NZM4 1560 aa13.93□□□□□ -0.18
CNKSR3-202ENST00000433165 PABPN1Q86U42 306 aaKnown RBP eCLIP13.88□□□□□ -0.19
CNKSR3-202ENST00000433165 SCRIBQ14160 1630 aa13.87□□□□□ -0.19
CNKSR3-202ENST00000433165 DNAJC5BQ9UF47 199 aa13.67□□□□□ -0.22
CNKSR3-202ENST00000433165 EIF4G1Q04637 1599 aaKnown RBP13.62□□□□□ -0.23
CNKSR3-202ENST00000433165 CC2D2AQ9P2K1 1620 aa13.57□□□□□ -0.24
CNKSR3-202ENST00000433165 CECR2Q9BXF3 1484 aa13.5□□□□□ -0.25
CNKSR3-202ENST00000433165 BAZ1AQ9NRL2 1556 aaPredicted RBP13.32□□□□□ -0.28
CNKSR3-202ENST00000433165 SMARCA2P51531 1590 aa13.31□□□□□ -0.28
CNKSR3-202ENST00000433165 SMARCA4P51532 1647 aa13.31□□□□□ -0.28
CNKSR3-202ENST00000433165 NCAPD3P42695 1498 aa13.28□□□□□ -0.28
CNKSR3-202ENST00000433165 HMGXB3Q12766 1538 aa13.25□□□□□ -0.29
CNKSR3-202ENST00000433165 ATAD2BQ9ULI0 1458 aa13.23□□□□□ -0.29
CNKSR3-202ENST00000433165 PEG3Q9GZU2 1588 aa13.22□□□□□ -0.29
CNKSR3-202ENST00000433165 BAZ1BQ9UIG0 1483 aaKnown RBP13.16□□□□□ -0.3
CNKSR3-202ENST00000433165 MROH2BQ7Z745 1585 aa13.11□□□□□ -0.31
CNKSR3-202ENST00000433165 LAMC3Q9Y6N6 1575 aa13□□□□□ -0.33
CNKSR3-202ENST00000433165 ERCC6Q03468 1493 aa12.99□□□□□ -0.33
CNKSR3-202ENST00000433165 WIZO95785 1651 aa12.97□□□□□ -0.33
CNKSR3-202ENST00000433165 HRCP23327 699 aa12.96□□□□□ -0.34
CNKSR3-202ENST00000433165 CUX2O14529 1486 aa12.95□□□□□ -0.34
CNKSR3-202ENST00000433165 RSF1Q96T23 1441 aaPredicted RBP12.94□□□□□ -0.34
CNKSR3-202ENST00000433165 TOP2AP11388 1531 aaKnown RBP12.92□□□□□ -0.34
CNKSR3-202ENST00000433165 PDS5BQ9NTI5 1447 aa12.9□□□□□ -0.34
CNKSR3-202ENST00000433165 CADPSQ9ULU8 1353 aa12.87□□□□□ -0.35
CNKSR3-202ENST00000433165 NESP48681 1621 aa12.86□□□□□ -0.35
CNKSR3-202ENST00000433165 THOC2Q8NI27 1593 aaKnown RBP12.8□□□□□ -0.36
CNKSR3-202ENST00000433165 KIF21AQ7Z4S6 1674 aa12.79□□□□□ -0.36
CNKSR3-202ENST00000433165 CFTRP13569 1480 aa12.77□□□□□ -0.37
CNKSR3-202ENST00000433165 PRDM2Q13029 1718 aa12.76□□□□□ -0.37
CNKSR3-202ENST00000433165 MRC2Q9UBG0 1479 aa12.75□□□□□ -0.37
CNKSR3-202ENST00000433165 CEP164Q9UPV0 1460 aa12.75□□□□□ -0.37
CNKSR3-202ENST00000433165 PELP1Q8IZL8 1130 aaKnown RBP12.75□□□□□ -0.37
CNKSR3-202ENST00000433165 WDR62O43379 1518 aa12.71□□□□□ -0.37
CNKSR3-202ENST00000433165 FANCD2Q9BXW9 1451 aa12.71□□□□□ -0.37
CNKSR3-202ENST00000433165 CCDC88BA6NC98 1476 aa12.69□□□□□ -0.38
CNKSR3-202ENST00000433165 ABCC8Q09428 1581 aa12.62□□□□□ -0.39
CNKSR3-202ENST00000433165 URB2Q14146 1524 aaKnown RBP12.55□□□□□ -0.4
CNKSR3-202ENST00000433165 DNAJC5Q9H3Z4 198 aa12.55□□□□□ -0.4
CNKSR3-202ENST00000433165 PPARGC1BQ86YN6 1023 aaKnown RBP12.54□□□□□ -0.4
CNKSR3-202ENST00000433165 DNMBPQ6XZF7 1577 aa12.52□□□□□ -0.4
CNKSR3-202ENST00000433165 PCGF6Q9BYE7 350 aa12.51□□□□□ -0.41
CNKSR3-202ENST00000433165 IFT140Q96RY7 1462 aa12.5□□□□□ -0.41
CNKSR3-202ENST00000433165 TOPBP1Q92547 1522 aa12.49□□□□□ -0.41
CNKSR3-202ENST00000433165 SUPT5HO00267 1087 aaKnown RBP12.45□□□□□ -0.42
CNKSR3-202ENST00000433165 WDR97A6NE52 1622 aa12.43□□□□□ -0.42
CNKSR3-202ENST00000433165 CHIC1Q5VXU3 224 aa12.39□□□□□ -0.43
CNKSR3-202ENST00000433165 POLA1P09884 1462 aaPredicted RBP12.37□□□□□ -0.43
CNKSR3-202ENST00000433165 TARBP1Q13395 1621 aaKnown RBP12.36□□□□□ -0.43
CNKSR3-202ENST00000433165 EIF4G3O43432 1585 aaKnown RBP12.35□□□□□ -0.43
CNKSR3-202ENST00000433165 SOGA1O94964 1423 aa12.33□□□□□ -0.44
CNKSR3-202ENST00000433165 CUX1P39880 1505 aa12.33□□□□□ -0.44
CNKSR3-202ENST00000433165 MYT1Q01538 1121 aa12.33□□□□□ -0.44
CNKSR3-202ENST00000433165 FGD5Q6ZNL6 1462 aa12.32□□□□□ -0.44
CNKSR3-202ENST00000433165 OSCARQ8IYS5 282 aa12.32□□□□□ -0.44
CNKSR3-202ENST00000433165 ZNF608Q9ULD9 1512 aaPredicted RBP12.32□□□□□ -0.44
CNKSR3-202ENST00000433165 BIVM-ERCC5R4GMW8 1640 aa12.28□□□□□ -0.44
CNKSR3-202ENST00000433165 SCAF1Q9H7N4 1312 aaKnown RBP12.27□□□□□ -0.44
CNKSR3-202ENST00000433165 TOP2BQ02880 1626 aa12.26□□□□□ -0.45
CNKSR3-202ENST00000433165 RAD54L2Q9Y4B4 1467 aa12.25□□□□□ -0.45
CNKSR3-202ENST00000433165 WRNQ14191 1432 aaPredicted RBP eCLIP12.25□□□□□ -0.45
CNKSR3-202ENST00000433165 MAGI1Q96QZ7 1491 aaPredicted RBP12.25□□□□□ -0.45
CNKSR3-202ENST00000433165 GRIN2BQ13224 1484 aa12.24□□□□□ -0.45
CNKSR3-202ENST00000433165 ABCA10Q8WWZ4 1543 aa12.24□□□□□ -0.45
CNKSR3-202ENST00000433165 AQRO60306 1485 aaKnown RBP eCLIP12.24□□□□□ -0.454e-8■■■■■ 31.9
CNKSR3-202ENST00000433165 CHD1O14646 1710 aa12.21□□□□□ -0.45
CNKSR3-202ENST00000433165 PBRM1Q86U86 1689 aa12.21□□□□□ -0.45
CNKSR3-202ENST00000433165 GAPVD1Q14C86 1478 aa12.2□□□□□ -0.46
CNKSR3-202ENST00000433165 TDRD9Q8NDG6 1382 aaKnown RBP12.2□□□□□ -0.46
CNKSR3-202ENST00000433165 ABCA5Q8WWZ7 1642 aa12.2□□□□□ -0.46
CNKSR3-202ENST00000433165 TRIM26Q12899 539 aaPredicted RBP12.19□□□□□ -0.46
CNKSR3-202ENST00000433165 SNAPC4Q5SXM2 1469 aa12.19□□□□□ -0.46
CNKSR3-202ENST00000433165 ZEB1P37275 1124 aaPredicted RBP12.18□□□□□ -0.46
CNKSR3-202ENST00000433165 SYNJ1O43426 1573 aa12.18□□□□□ -0.46
CNKSR3-202ENST00000433165 SYNJ2O15056 1496 aa12.17□□□□□ -0.46
CNKSR3-202ENST00000433165 CHMP7Q8WUX9 453 aaPredicted RBP12.14□□□□□ -0.47
CNKSR3-202ENST00000433165 ERICH3Q5RHP9 1530 aa12.13□□□□□ -0.47
CNKSR3-202ENST00000433165 FBLN2P98095 1184 aa12.13□□□□□ -0.47
CNKSR3-202ENST00000433165 RIMBP3CA6NJZ7 1639 aa12.11□□□□□ -0.47
CNKSR3-202ENST00000433165 RIMBP3BA6NNM3 1639 aa12.11□□□□□ -0.47
CNKSR3-202ENST00000433165 RIMBP3Q9UFD9 1639 aa12.11□□□□□ -0.47
CNKSR3-202ENST00000433165 ARHGEF11O15085 1522 aa12.1□□□□□ -0.47
CNKSR3-202ENST00000433165 ADAMTS12P58397 1594 aa12.1□□□□□ -0.47
CNKSR3-202ENST00000433165 CLASP1Q7Z460 1538 aa12.09□□□□□ -0.47
CNKSR3-202ENST00000433165 FHAD1B1AJZ9 1412 aa12.09□□□□□ -0.47
CNKSR3-202ENST00000433165 GRIN2AQ12879 1464 aa12.06□□□□□ -0.48
CNKSR3-202ENST00000433165 KIF27Q86VH2 1401 aa12.05□□□□□ -0.48
CNKSR3-202ENST00000433165 TRIM41Q8WV44 630 aa12.04□□□□□ -0.48
CNKSR3-202ENST00000433165 CUL7Q14999 1698 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms