RNA–Protein interactions for RNA: ENST00000591107.6

NPC1-212, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

TSL 3

Gene NPC1, Length 890 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-212ENST00000591107 NISCHQ9Y2I1 1504 aa33.38■■■□□ 2.93
NPC1-212ENST00000591107 AEBP2Q6ZN18 517 aaPredicted RBP31.26■■■□□ 2.59
NPC1-212ENST00000591107 CHIC1Q5VXU3 224 aa31.09■■■□□ 2.57
NPC1-212ENST00000591107 ABCC9O60706 1549 aa30.13■■■□□ 2.41
NPC1-212ENST00000591107 CCDC180Q9P1Z9 1646 aa29.98■■■□□ 2.39
NPC1-212ENST00000591107 RB1CC1Q8TDY2 1594 aa28.54■■■□□ 2.16
NPC1-212ENST00000591107 NACADO15069 1562 aa28.29■■■□□ 2.12
NPC1-212ENST00000591107 DNAJC5BQ9UF47 199 aa28.26■■■□□ 2.11
NPC1-212ENST00000591107 DCAF8L2P0C7V8 631 aa28.21■■■□□ 2.11
NPC1-212ENST00000591107 UNC13AQ9UPW8 1703 aa28.05■■■□□ 2.08
NPC1-212ENST00000591107 PABPN1Q86U42 306 aaKnown RBP eCLIP28.02■■■□□ 2.08
NPC1-212ENST00000591107 MYO15BQ96JP2 1530 aa27.81■■■□□ 2.04
NPC1-212ENST00000591107 BICRAQ9NZM4 1560 aa27.81■■■□□ 2.04
NPC1-212ENST00000591107 ZCCHC6Q5VYS8 1495 aaKnown RBP27.7■■■□□ 2.03
NPC1-212ENST00000591107 DCAF1Q9Y4B6 1507 aa27.48■■□□□ 1.99
NPC1-212ENST00000591107 SCRIBQ14160 1630 aa27.47■■□□□ 1.99
NPC1-212ENST00000591107 PHF23Q9BUL5 403 aaPredicted RBP27.38■■□□□ 1.97
NPC1-212ENST00000591107 SHROOM4Q9ULL8 1493 aa27.23■■□□□ 1.95
NPC1-212ENST00000591107 CC2D2AQ9P2K1 1620 aa27.19■■□□□ 1.94
NPC1-212ENST00000591107 EIF4G1Q04637 1599 aaKnown RBP27.1■■□□□ 1.93
NPC1-212ENST00000591107 CECR2Q9BXF3 1484 aa27.08■■□□□ 1.93
NPC1-212ENST00000591107 SENP3Q9H4L4 574 aaPredicted RBP26.47■■□□□ 1.83
NPC1-212ENST00000591107 SMARCA4P51532 1647 aa26.12■■□□□ 1.77
NPC1-212ENST00000591107 NCAPD3P42695 1498 aa26.11■■□□□ 1.77
NPC1-212ENST00000591107 ATAD2BQ9ULI0 1458 aa26.1■■□□□ 1.77
NPC1-212ENST00000591107 SMARCA2P51531 1590 aa25.98■■□□□ 1.75
NPC1-212ENST00000591107 HMGXB3Q12766 1538 aa25.97■■□□□ 1.75
NPC1-212ENST00000591107 ERCC6Q03468 1493 aa25.96■■□□□ 1.75
NPC1-212ENST00000591107 BAZ1AQ9NRL2 1556 aaPredicted RBP25.9■■□□□ 1.74
NPC1-212ENST00000591107 NESP48681 1621 aa25.9■■□□□ 1.74
NPC1-212ENST00000591107 BAZ1BQ9UIG0 1483 aaKnown RBP25.86■■□□□ 1.73
NPC1-212ENST00000591107 CUX2O14529 1486 aa25.85■■□□□ 1.73
NPC1-212ENST00000591107 DNAJC5Q9H3Z4 198 aa25.83■■□□□ 1.73
NPC1-212ENST00000591107 MROH2BQ7Z745 1585 aa25.8■■□□□ 1.72
NPC1-212ENST00000591107 PEG3Q9GZU2 1588 aa25.77■■□□□ 1.72
NPC1-212ENST00000591107 THOC2Q8NI27 1593 aaKnown RBP25.64■■□□□ 1.69
NPC1-212ENST00000591107 KIF21AQ7Z4S6 1674 aa25.58■■□□□ 1.68
NPC1-212ENST00000591107 LAMC3Q9Y6N6 1575 aa25.56■■□□□ 1.68
NPC1-212ENST00000591107 WIZO95785 1651 aa25.53■■□□□ 1.68
NPC1-212ENST00000591107 PLPPR3Q6T4P5 718 aa25.51■■□□□ 1.67
NPC1-212ENST00000591107 PDS5BQ9NTI5 1447 aa25.37■■□□□ 1.65
NPC1-212ENST00000591107 CADPSQ9ULU8 1353 aa25.32■■□□□ 1.64
NPC1-212ENST00000591107 MRC2Q9UBG0 1479 aa25.25■■□□□ 1.63
NPC1-212ENST00000591107 WDR62O43379 1518 aa25.21■■□□□ 1.63
NPC1-212ENST00000591107 RSF1Q96T23 1441 aaPredicted RBP25.19■■□□□ 1.62
NPC1-212ENST00000591107 CEP164Q9UPV0 1460 aa25.14■■□□□ 1.61
NPC1-212ENST00000591107 TOP2AP11388 1531 aaKnown RBP25.13■■□□□ 1.61
NPC1-212ENST00000591107 FANCD2Q9BXW9 1451 aa25.11■■□□□ 1.61
NPC1-212ENST00000591107 CFTRP13569 1480 aa25.05■■□□□ 1.6
NPC1-212ENST00000591107 URB2Q14146 1524 aaKnown RBP24.96■■□□□ 1.59
NPC1-212ENST00000591107 PRDM2Q13029 1718 aa24.89■■□□□ 1.57
NPC1-212ENST00000591107 TRIM41Q8WV44 630 aa24.85■■□□□ 1.57
NPC1-212ENST00000591107 CCDC88BA6NC98 1476 aa24.83■■□□□ 1.57
NPC1-212ENST00000591107 ZNF608Q9ULD9 1512 aaPredicted RBP24.68■■□□□ 1.54
NPC1-212ENST00000591107 TOPBP1Q92547 1522 aa24.65■■□□□ 1.54
NPC1-212ENST00000591107 IFT140Q96RY7 1462 aa24.59■■□□□ 1.53
NPC1-212ENST00000591107 OSCARQ8IYS5 282 aa24.58■■□□□ 1.53
NPC1-212ENST00000591107 EIF4G3O43432 1585 aaKnown RBP24.56■■□□□ 1.52
NPC1-212ENST00000591107 DNMBPQ6XZF7 1577 aa24.55■■□□□ 1.52
NPC1-212ENST00000591107 FOXD1Q16676 465 aa24.48■■□□□ 1.51
NPC1-212ENST00000591107 RIMBP3CA6NJZ7 1639 aa24.47■■□□□ 1.51
NPC1-212ENST00000591107 RIMBP3BA6NNM3 1639 aa24.47■■□□□ 1.51
NPC1-212ENST00000591107 RIMBP3Q9UFD9 1639 aa24.47■■□□□ 1.51
NPC1-212ENST00000591107 TARBP1Q13395 1621 aaKnown RBP24.45■■□□□ 1.5
NPC1-212ENST00000591107 ABCC8Q09428 1581 aa24.42■■□□□ 1.5
NPC1-212ENST00000591107 AQRO60306 1485 aaKnown RBP eCLIP24.41■■□□□ 1.5
NPC1-212ENST00000591107 CHD1O14646 1710 aa24.41■■□□□ 1.5
NPC1-212ENST00000591107 POLA1P09884 1462 aaPredicted RBP24.4■■□□□ 1.5
NPC1-212ENST00000591107 ARHGEF11O15085 1522 aa24.36■■□□□ 1.49
NPC1-212ENST00000591107 RAD54L2Q9Y4B4 1467 aa24.36■■□□□ 1.49
NPC1-212ENST00000591107 FGD5Q6ZNL6 1462 aa24.26■■□□□ 1.47
NPC1-212ENST00000591107 CUX1P39880 1505 aa24.25■■□□□ 1.47
NPC1-212ENST00000591107 TDRD9Q8NDG6 1382 aaKnown RBP24.23■■□□□ 1.47
NPC1-212ENST00000591107 FBLN2P98095 1184 aa24.22■■□□□ 1.47
NPC1-212ENST00000591107 SOGA1O94964 1423 aa24.21■■□□□ 1.47
NPC1-212ENST00000591107 SNAPC4Q5SXM2 1469 aa24.19■■□□□ 1.46
NPC1-212ENST00000591107 ARAP1Q96P48 1450 aa24.14■■□□□ 1.46
NPC1-212ENST00000591107 WDR97A6NE52 1622 aa24.13■■□□□ 1.45
NPC1-212ENST00000591107 CYB5RLQ6IPT4 315 aa24.11■■□□□ 1.45
NPC1-212ENST00000591107 SUPT5HO00267 1087 aaKnown RBP24.08■■□□□ 1.45
NPC1-212ENST00000591107 PBRM1Q86U86 1689 aa24.05■■□□□ 1.44
NPC1-212ENST00000591107 CLASP1Q7Z460 1538 aa24.05■■□□□ 1.44
NPC1-212ENST00000591107 GRIN2BQ13224 1484 aa24.02■■□□□ 1.44
NPC1-212ENST00000591107 MAGI1Q96QZ7 1491 aaPredicted RBP24.01■■□□□ 1.43
NPC1-212ENST00000591107 ADRA2BP18089 450 aa23.99■■□□□ 1.43
NPC1-212ENST00000591107 SYNJ1O43426 1573 aa23.99■■□□□ 1.43
NPC1-212ENST00000591107 PPP6R1Q9UPN7 881 aa23.98■■□□□ 1.43
NPC1-212ENST00000591107 ABCA5Q8WWZ7 1642 aa23.96■■□□□ 1.43
NPC1-212ENST00000591107 CHMP7Q8WUX9 453 aaPredicted RBP23.96■■□□□ 1.43
NPC1-212ENST00000591107 SYNJ2O15056 1496 aa23.95■■□□□ 1.42
NPC1-212ENST00000591107 GAPVD1Q14C86 1478 aa23.94■■□□□ 1.42
NPC1-212ENST00000591107 ABCA10Q8WWZ4 1543 aa23.91■■□□□ 1.42
NPC1-212ENST00000591107 POTEDQ86YR6 584 aa23.89■■□□□ 1.41
NPC1-212ENST00000591107 TRHP20396 242 aaPredicted RBP23.87■■□□□ 1.41
NPC1-212ENST00000591107 BIVM-ERCC5R4GMW8 1640 aa23.82■■□□□ 1.4
NPC1-212ENST00000591107 ADAMTS12P58397 1594 aa23.81■■□□□ 1.4
NPC1-212ENST00000591107 TOP2BQ02880 1626 aa23.8■■□□□ 1.4
NPC1-212ENST00000591107 ERCC6L2Q5T890 1561 aa23.78■■□□□ 1.4
NPC1-212ENST00000591107 WRNQ14191 1432 aaPredicted RBP eCLIP23.76■■□□□ 1.39
NPC1-212ENST00000591107 GRIN2AQ12879 1464 aa23.75■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 119.7 ms