Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SF3A1Q15459 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
SF3A1Q15459 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC25.67■■□□□ 1.7
SF3A1Q15459 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
SF3A1Q15459 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SF3A1Q15459 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC25.66■■□□□ 1.7
SF3A1Q15459 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SF3A1Q15459 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SF3A1Q15459 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC25.66■■□□□ 1.7
SF3A1Q15459 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SF3A1Q15459 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SF3A1Q15459 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
SF3A1Q15459 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC25.65■■□□□ 1.7
SF3A1Q15459 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
SF3A1Q15459 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 MIR6722-201ENST00000617286 78 ntBASIC25.65■■□□□ 1.7
SF3A1Q15459 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC25.65■■□□□ 1.7
SF3A1Q15459 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC25.65■■□□□ 1.7
SF3A1Q15459 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SF3A1Q15459 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC25.65■■□□□ 1.7
SF3A1Q15459 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC25.64■■□□□ 1.7
SF3A1Q15459 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.64■■□□□ 1.7
SF3A1Q15459 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SF3A1Q15459 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC25.64■■□□□ 1.69
SF3A1Q15459 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC25.64■■□□□ 1.69
SF3A1Q15459 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.63■■□□□ 1.69
SF3A1Q15459 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC25.63■■□□□ 1.69
SF3A1Q15459 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC25.63■■□□□ 1.69
SF3A1Q15459 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SF3A1Q15459 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SF3A1Q15459 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
SF3A1Q15459 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SF3A1Q15459 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC25.62■■□□□ 1.69
SF3A1Q15459 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC25.62■■□□□ 1.69
SF3A1Q15459 CLTA-206ENST00000466396 695 ntTSL 2 BASIC25.62■■□□□ 1.69
SF3A1Q15459 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC25.62■■□□□ 1.69
SF3A1Q15459 AL353803.4-201ENST00000565882 1934 ntBASIC25.62■■□□□ 1.69
SF3A1Q15459 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC25.62■■□□□ 1.69
SF3A1Q15459 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SF3A1Q15459 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SF3A1Q15459 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC25.62■■□□□ 1.69
SF3A1Q15459 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.61■■□□□ 1.69
SF3A1Q15459 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SF3A1Q15459 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SF3A1Q15459 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC25.61■■□□□ 1.69
SF3A1Q15459 AC092028.1-203ENST00000608262 953 ntBASIC25.61■■□□□ 1.69
SF3A1Q15459 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SF3A1Q15459 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SF3A1Q15459 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SF3A1Q15459 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.6■■□□□ 1.69
SF3A1Q15459 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC25.6■■□□□ 1.69
SF3A1Q15459 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC25.6■■□□□ 1.69
SF3A1Q15459 Z92544.1-202ENST00000571933 1220 ntBASIC25.6■■□□□ 1.69
SF3A1Q15459 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC25.6■■□□□ 1.69
SF3A1Q15459 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SF3A1Q15459 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.6■■□□□ 1.69
SF3A1Q15459 TERT-206ENST00000508104 2486 ntTSL 5 BASIC25.59■■□□□ 1.69
SF3A1Q15459 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SF3A1Q15459 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SF3A1Q15459 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC25.59■■□□□ 1.69
SF3A1Q15459 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SF3A1Q15459 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
SF3A1Q15459 AC005703.6-201ENST00000623265 1329 ntBASIC25.59■■□□□ 1.69
SF3A1Q15459 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.59■■□□□ 1.69
SF3A1Q15459 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SF3A1Q15459 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC25.58■■□□□ 1.69
SF3A1Q15459 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SF3A1Q15459 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC25.58■■□□□ 1.69
SF3A1Q15459 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SF3A1Q15459 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC25.58■■□□□ 1.69
SF3A1Q15459 KRT125P-201ENST00000546827 989 ntBASIC25.58■■□□□ 1.69
SF3A1Q15459 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.58■■□□□ 1.69
SF3A1Q15459 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
SF3A1Q15459 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC25.58■■□□□ 1.69
SF3A1Q15459 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
SF3A1Q15459 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC25.58■■□□□ 1.68
SF3A1Q15459 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.58■■□□□ 1.68
SF3A1Q15459 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms