Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN1BQ07699 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN1BQ07699 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN1BQ07699 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.76■□□□□ 0.75
SCN1BQ07699 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
SCN1BQ07699 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
SCN1BQ07699 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SCN1BQ07699 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN1BQ07699 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SCN1BQ07699 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
SCN1BQ07699 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN1BQ07699 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN1BQ07699 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN1BQ07699 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
SCN1BQ07699 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SCN1BQ07699 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SCN1BQ07699 ESRRAP2-201ENST00000418437 1549 ntBASIC19.75■□□□□ 0.75
SCN1BQ07699 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
SCN1BQ07699 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.75■□□□□ 0.75
SCN1BQ07699 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SCN1BQ07699 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SCN1BQ07699 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SCN1BQ07699 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SCN1BQ07699 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
SCN1BQ07699 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC19.74■□□□□ 0.75
SCN1BQ07699 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SCN1BQ07699 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SCN1BQ07699 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN1BQ07699 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SCN1BQ07699 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SCN1BQ07699 SPCS2P3-201ENST00000500401 656 ntBASIC19.73■□□□□ 0.75
SCN1BQ07699 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.73■□□□□ 0.75
SCN1BQ07699 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SCN1BQ07699 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC19.73■□□□□ 0.75
SCN1BQ07699 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SCN1BQ07699 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN1BQ07699 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC19.72■□□□□ 0.75
SCN1BQ07699 OSCAR-202ENST00000351806 1375 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN1BQ07699 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN1BQ07699 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN1BQ07699 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN1BQ07699 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN1BQ07699 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN1BQ07699 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC19.72■□□□□ 0.75
SCN1BQ07699 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC19.72■□□□□ 0.75
SCN1BQ07699 LINC01233-202ENST00000598832 568 ntTSL 2 BASIC19.72■□□□□ 0.75
SCN1BQ07699 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SCN1BQ07699 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SCN1BQ07699 RBM42-205ENST00000589871 1487 ntTSL 5 BASIC19.72■□□□□ 0.75
SCN1BQ07699 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SCN1BQ07699 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SCN1BQ07699 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN1BQ07699 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SCN1BQ07699 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC19.71■□□□□ 0.75
SCN1BQ07699 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
SCN1BQ07699 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC19.71■□□□□ 0.75
SCN1BQ07699 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 U85056.1-201ENST00000616429 682 ntBASIC19.71■□□□□ 0.75
SCN1BQ07699 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SCN1BQ07699 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
SCN1BQ07699 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SCN1BQ07699 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SCN1BQ07699 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.71■□□□□ 0.75
SCN1BQ07699 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
SCN1BQ07699 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN1BQ07699 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN1BQ07699 RPS2P7-201ENST00000447334 885 ntBASIC19.7■□□□□ 0.74
SCN1BQ07699 DUX4L9-201ENST00000449051 1259 ntBASIC19.7■□□□□ 0.74
SCN1BQ07699 MIR6765-201ENST00000614092 87 ntBASIC19.7■□□□□ 0.74
SCN1BQ07699 BRD4-212ENST00000630599 726 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN1BQ07699 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SCN1BQ07699 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN1BQ07699 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
SCN1BQ07699 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN1BQ07699 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
SCN1BQ07699 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.7■□□□□ 0.74
SCN1BQ07699 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SCN1BQ07699 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.7■□□□□ 0.74
SCN1BQ07699 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN1BQ07699 AC073130.3-201ENST00000624389 2278 ntBASIC19.69■□□□□ 0.74
SCN1BQ07699 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.69■□□□□ 0.74
SCN1BQ07699 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN1BQ07699 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SCN1BQ07699 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SCN1BQ07699 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC19.69■□□□□ 0.74
SCN1BQ07699 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 17.6 ms