RNA–Protein interactions for RNA: ENST00000324938.9

LIMS2-201, Transcript of LIM zinc finger domain containing 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS2, Length 2,111 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-201ENST00000324938 NISCHQ9Y2I1 1504 aa46.09■■■■■ 4.97
LIMS2-201ENST00000324938 CCDC180Q9P1Z9 1646 aa39.71■■■■□ 3.95
LIMS2-201ENST00000324938 ZCCHC6Q5VYS8 1495 aaKnown RBP38.95■■■■□ 3.82
LIMS2-201ENST00000324938 SHROOM4Q9ULL8 1493 aa38.44■■■■□ 3.74
LIMS2-201ENST00000324938 DCAF1Q9Y4B6 1507 aa38.05■■■■□ 3.68
LIMS2-201ENST00000324938 DCAF8L2P0C7V8 631 aa37.75■■■■□ 3.63
LIMS2-201ENST00000324938 SUPT5HO00267 1087 aaKnown RBP37.45■■■■□ 3.59
LIMS2-201ENST00000324938 MYO15BQ96JP2 1530 aa37.18■■■■□ 3.54
LIMS2-201ENST00000324938 SCRIBQ14160 1630 aa36.76■■■■□ 3.47
LIMS2-201ENST00000324938 ABCC9O60706 1549 aa36.7■■■■□ 3.47
LIMS2-201ENST00000324938 NACADO15069 1562 aa36.69■■■■□ 3.46
LIMS2-201ENST00000324938 CHIC1Q5VXU3 224 aa36.37■■■■□ 3.41
LIMS2-201ENST00000324938 RSF1Q96T23 1441 aaPredicted RBP36.16■■■■□ 3.38
LIMS2-201ENST00000324938 RB1CC1Q8TDY2 1594 aa36.16■■■■□ 3.38
LIMS2-201ENST00000324938 CECR2Q9BXF3 1484 aa35.79■■■■□ 3.32
LIMS2-201ENST00000324938 MROH2BQ7Z745 1585 aa35.7■■■■□ 3.31
LIMS2-201ENST00000324938 UNC13AQ9UPW8 1703 aa35.66■■■■□ 3.3
LIMS2-201ENST00000324938 WIZO95785 1651 aa35.52■■■■□ 3.28
LIMS2-201ENST00000324938 BAZ1AQ9NRL2 1556 aaPredicted RBP35.5■■■■□ 3.27
LIMS2-201ENST00000324938 SMARCA4P51532 1647 aa35.26■■■■□ 3.24
LIMS2-201ENST00000324938 BICRAQ9NZM4 1560 aa35.13■■■■□ 3.21
LIMS2-201ENST00000324938 TOP2AP11388 1531 aaKnown RBP35.09■■■■□ 3.21
LIMS2-201ENST00000324938 TRIM41Q8WV44 630 aa35.07■■■■□ 3.2
LIMS2-201ENST00000324938 LOC105371045A0A1W2PR82 267 aa35.06■■■■□ 3.2
LIMS2-201ENST00000324938 EIF4G1Q04637 1599 aaKnown RBP35.02■■■■□ 3.2
LIMS2-201ENST00000324938 SMARCA2P51531 1590 aa34.84■■■■□ 3.17
LIMS2-201ENST00000324938 PABPN1Q86U42 306 aaKnown RBP eCLIP34.78■■■■□ 3.16
LIMS2-201ENST00000324938 CCDC88BA6NC98 1476 aa34.76■■■■□ 3.15
LIMS2-201ENST00000324938 PEG3Q9GZU2 1588 aa34.73■■■■□ 3.15
LIMS2-201ENST00000324938 PCGF6Q9BYE7 350 aa34.55■■■■□ 3.12
LIMS2-201ENST00000324938 FAM9AQ8IZU1 332 aaPredicted RBP34.54■■■■□ 3.12
LIMS2-201ENST00000324938 ABCC8Q09428 1581 aa34.45■■■■□ 3.11
LIMS2-201ENST00000324938 HRCP23327 699 aa34.4■■■■□ 3.1
LIMS2-201ENST00000324938 ATAD2BQ9ULI0 1458 aa34.37■■■■□ 3.09
LIMS2-201ENST00000324938 BAZ1BQ9UIG0 1483 aaKnown RBP34.25■■■■□ 3.07
LIMS2-201ENST00000324938 TRIM26Q12899 539 aaPredicted RBP34.23■■■■□ 3.07
LIMS2-201ENST00000324938 EHMT2Q96KQ7 1210 aa34.07■■■■□ 3.05
LIMS2-201ENST00000324938 EEA1Q15075 1411 aa34■■■■□ 3.03
LIMS2-201ENST00000324938 WRNQ14191 1432 aaPredicted RBP eCLIP34■■■■□ 3.03
LIMS2-201ENST00000324938 SOGA1O94964 1423 aa33.97■■■■□ 3.03
LIMS2-201ENST00000324938 HMGXB3Q12766 1538 aa33.93■■■■□ 3.02
LIMS2-201ENST00000324938 SYNJ1O43426 1573 aa33.9■■■■□ 3.02
LIMS2-201ENST00000324938 NCAPD3P42695 1498 aa33.85■■■■□ 3.01
LIMS2-201ENST00000324938 RUSC2Q8N2Y8 1516 aa33.81■■■■□ 3
LIMS2-201ENST00000324938 CSRNP3Q8WYN3 585 aa33.74■■■□□ 2.99
LIMS2-201ENST00000324938 TNIKQ9UKE5 1360 aa33.71■■■□□ 2.99
LIMS2-201ENST00000324938 CEP162Q5TB80 1403 aa33.67■■■□□ 2.98
LIMS2-201ENST00000324938 GOLGA3Q08378 1498 aa33.64■■■□□ 2.98
LIMS2-201ENST00000324938 TOP2BQ02880 1626 aa33.64■■■□□ 2.98
LIMS2-201ENST00000324938 BIVM-ERCC5R4GMW8 1640 aa33.61■■■□□ 2.97
LIMS2-201ENST00000324938 KIF21BO75037 1637 aa33.6■■■□□ 2.97
LIMS2-201ENST00000324938 CEP164Q9UPV0 1460 aa33.53■■■□□ 2.96
LIMS2-201ENST00000324938 PPARGC1BQ86YN6 1023 aaKnown RBP33.52■■■□□ 2.96
LIMS2-201ENST00000324938 PRDM2Q13029 1718 aa33.44■■■□□ 2.94
LIMS2-201ENST00000324938 UBTFP17480 764 aaKnown RBP33.43■■■□□ 2.94
LIMS2-201ENST00000324938 CFTRP13569 1480 aa33.42■■■□□ 2.94
LIMS2-201ENST00000324938 ZEB1P37275 1124 aaPredicted RBP33.35■■■□□ 2.93
LIMS2-201ENST00000324938 CUX1P39880 1505 aa33.31■■■□□ 2.92
LIMS2-201ENST00000324938 RAPGEF2Q9Y4G8 1499 aa33.23■■■□□ 2.91
LIMS2-201ENST00000324938 CC2D2AQ9P2K1 1620 aa33.22■■■□□ 2.91
LIMS2-201ENST00000324938 ERICH3Q5RHP9 1530 aa33.15■■■□□ 2.9
LIMS2-201ENST00000324938 CLIP1P30622 1438 aa33.14■■■□□ 2.9
LIMS2-201ENST00000324938 PRXQ9BXM0 1461 aa33.09■■■□□ 2.89
LIMS2-201ENST00000324938 CADPSQ9ULU8 1353 aa33.06■■■□□ 2.88
LIMS2-201ENST00000324938 KIF27Q86VH2 1401 aa33.02■■■□□ 2.88
LIMS2-201ENST00000324938 VPS8Q8N3P4 1428 aa33.01■■■□□ 2.87
LIMS2-201ENST00000324938 TTBK1Q5TCY1 1321 aaPredicted RBP32.9■■■□□ 2.86
LIMS2-201ENST00000324938 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.78■■■□□ 2.84
LIMS2-201ENST00000324938 FGD5Q6ZNL6 1462 aa32.77■■■□□ 2.84
LIMS2-201ENST00000324938 FANCD2Q9BXW9 1451 aa32.75■■■□□ 2.83
LIMS2-201ENST00000324938 CUX2O14529 1486 aa32.74■■■□□ 2.83
LIMS2-201ENST00000324938 ARAP1Q96P48 1450 aa32.73■■■□□ 2.83
LIMS2-201ENST00000324938 CCER1Q8TC90 406 aaPredicted RBP32.72■■■□□ 2.83
LIMS2-201ENST00000324938 DNMBPQ6XZF7 1577 aa32.66■■■□□ 2.82
LIMS2-201ENST00000324938 RANGAP1P46060 587 aaPredicted RBP32.65■■■□□ 2.82
LIMS2-201ENST00000324938 APLP2Q06481 763 aa32.63■■■□□ 2.81
LIMS2-201ENST00000324938 IGF1RP08069 1367 aa32.63■■■□□ 2.81
LIMS2-201ENST00000324938 LAMC3Q9Y6N6 1575 aa32.57■■■□□ 2.8
LIMS2-201ENST00000324938 NESP48681 1621 aa32.56■■■□□ 2.8
LIMS2-201ENST00000324938 TOPBP1Q92547 1522 aa32.53■■■□□ 2.8
LIMS2-201ENST00000324938 ARHGAP35Q9NRY4 1499 aa32.52■■■□□ 2.8
LIMS2-201ENST00000324938 CARMIL1Q5VZK9 1371 aa32.48■■■□□ 2.79
LIMS2-201ENST00000324938 ABCA10Q8WWZ4 1543 aa32.47■■■□□ 2.79
LIMS2-201ENST00000324938 POLA1P09884 1462 aaPredicted RBP32.46■■■□□ 2.79
LIMS2-201ENST00000324938 RAD54L2Q9Y4B4 1467 aa32.38■■■□□ 2.77
LIMS2-201ENST00000324938 WDR97A6NE52 1622 aa32.37■■■□□ 2.77
LIMS2-201ENST00000324938 CUL7Q14999 1698 aa32.34■■■□□ 2.77
LIMS2-201ENST00000324938 URB2Q14146 1524 aaKnown RBP32.32■■■□□ 2.76
LIMS2-201ENST00000324938 HNRNPUL2Q1KMD3 747 aaKnown RBP32.32■■■□□ 2.76
LIMS2-201ENST00000324938 KANK4Q5T7N3 995 aaPredicted RBP32.25■■■□□ 2.75
LIMS2-201ENST00000324938 PDS5BQ9NTI5 1447 aa32.24■■■□□ 2.75
LIMS2-201ENST00000324938 KIF21AQ7Z4S6 1674 aa32.22■■■□□ 2.75
LIMS2-201ENST00000324938 MAP3K1Q13233 1512 aa32.22■■■□□ 2.75
LIMS2-201ENST00000324938 CTTNBP2Q8WZ74 1663 aa32.2■■■□□ 2.75
LIMS2-201ENST00000324938 RRBP1Q9P2E9 1410 aaKnown RBP32.19■■■□□ 2.74
LIMS2-201ENST00000324938 ABCA5Q8WWZ7 1642 aa32.18■■■□□ 2.74
LIMS2-201ENST00000324938 TIAM1Q13009 1591 aa32.17■■■□□ 2.74
LIMS2-201ENST00000324938 EFCAB5A4FU69 1503 aa32.11■■■□□ 2.73
LIMS2-201ENST00000324938 FHAD1B1AJZ9 1412 aa32.09■■■□□ 2.73
LIMS2-201ENST00000324938 DNAJC5BQ9UF47 199 aa32.09■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms