RNA–Protein interactions for RNA: ENST00000338888.3

RUNX3-202, Transcript of runt related transcription factor 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RUNX3, Length 2,629 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNX3-202ENST00000338888 NISCHQ9Y2I1 1504 aa40.13■■■■■ 4.02
RUNX3-202ENST00000338888 CCDC180Q9P1Z9 1646 aa34.53■■■■□ 3.12
RUNX3-202ENST00000338888 SHROOM4Q9ULL8 1493 aa34.51■■■■□ 3.12
RUNX3-202ENST00000338888 HRCP23327 699 aa34.34■■■■□ 3.09
RUNX3-202ENST00000338888 SUPT5HO00267 1087 aaKnown RBP34.33■■■■□ 3.09
RUNX3-202ENST00000338888 MYO15BQ96JP2 1530 aa33.81■■■■□ 3
RUNX3-202ENST00000338888 PCGF6Q9BYE7 350 aa33.81■■■■□ 3
RUNX3-202ENST00000338888 ZCCHC6Q5VYS8 1495 aaKnown RBP33.75■■■□□ 2.99
RUNX3-202ENST00000338888 PPARGC1BQ86YN6 1023 aaKnown RBP33.69■■■□□ 2.98
RUNX3-202ENST00000338888 CHIC1Q5VXU3 224 aa33.68■■■□□ 2.98
RUNX3-202ENST00000338888 DCAF8L2P0C7V8 631 aa33.66■■■□□ 2.98
RUNX3-202ENST00000338888 DCAF1Q9Y4B6 1507 aa33.01■■■□□ 2.87
RUNX3-202ENST00000338888 LOC105371045A0A1W2PR82 267 aa32.91■■■□□ 2.86
RUNX3-202ENST00000338888 ABCC9O60706 1549 aa32.82■■■□□ 2.84
RUNX3-202ENST00000338888 TRIM26Q12899 539 aaPredicted RBP32.75■■■□□ 2.83
RUNX3-202ENST00000338888 PELP1Q8IZL8 1130 aaKnown RBP32.72■■■□□ 2.83
RUNX3-202ENST00000338888 ZEB1P37275 1124 aaPredicted RBP32.38■■■□□ 2.77
RUNX3-202ENST00000338888 SCAF1Q9H7N4 1312 aaKnown RBP32.38■■■□□ 2.77
RUNX3-202ENST00000338888 SCRIBQ14160 1630 aa32.24■■■□□ 2.75
RUNX3-202ENST00000338888 NACADO15069 1562 aa32.16■■■□□ 2.74
RUNX3-202ENST00000338888 RB1CC1Q8TDY2 1594 aa31.85■■■□□ 2.69
RUNX3-202ENST00000338888 TRIM41Q8WV44 630 aa31.76■■■□□ 2.67
RUNX3-202ENST00000338888 FAM9AQ8IZU1 332 aaPredicted RBP31.75■■■□□ 2.67
RUNX3-202ENST00000338888 ACIN1Q9UKV3 1341 aaKnown RBP31.66■■■□□ 2.66
RUNX3-202ENST00000338888 EHMT2Q96KQ7 1210 aa31.62■■■□□ 2.65
RUNX3-202ENST00000338888 NEUROD1Q13562 356 aa31.6■■■□□ 2.65
RUNX3-202ENST00000338888 RSF1Q96T23 1441 aaPredicted RBP31.42■■■□□ 2.62
RUNX3-202ENST00000338888 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.42■■■□□ 2.62
RUNX3-202ENST00000338888 GTF3C3Q9Y5Q9 886 aa31.4■■■□□ 2.62
RUNX3-202ENST00000338888 CECR2Q9BXF3 1484 aa31.37■■■□□ 2.61
RUNX3-202ENST00000338888 CCER1Q8TC90 406 aaPredicted RBP31.34■■■□□ 2.61
RUNX3-202ENST00000338888 MYT1Q01538 1121 aa31.34■■■□□ 2.61
RUNX3-202ENST00000338888 UNC13AQ9UPW8 1703 aa31.28■■■□□ 2.6
RUNX3-202ENST00000338888 CENPBP07199 599 aaPredicted RBP31.27■■■□□ 2.6
RUNX3-202ENST00000338888 DIEXFQ68CQ4 756 aaKnown RBP31.26■■■□□ 2.59
RUNX3-202ENST00000338888 PABPN1Q86U42 306 aaKnown RBP eCLIP31.22■■■□□ 2.59
RUNX3-202ENST00000338888 MROH2BQ7Z745 1585 aa31.15■■■□□ 2.58
RUNX3-202ENST00000338888 BICRAQ9NZM4 1560 aa30.96■■■□□ 2.55
RUNX3-202ENST00000338888 WIZO95785 1651 aa30.94■■■□□ 2.54
RUNX3-202ENST00000338888 BAZ1AQ9NRL2 1556 aaPredicted RBP30.91■■■□□ 2.54
RUNX3-202ENST00000338888 TTBK1Q5TCY1 1321 aaPredicted RBP30.83■■■□□ 2.53
RUNX3-202ENST00000338888 YTHDC1Q96MU7 727 aaKnown RBP30.75■■■□□ 2.51
RUNX3-202ENST00000338888 SMARCA4P51532 1647 aa30.75■■■□□ 2.51
RUNX3-202ENST00000338888 ZNF316A6NFI3 1004 aaPredicted RBP30.71■■■□□ 2.51
RUNX3-202ENST00000338888 WRNQ14191 1432 aaPredicted RBP eCLIP30.51■■■□□ 2.48
RUNX3-202ENST00000338888 MIER1Q8N108 512 aa30.49■■■□□ 2.47
RUNX3-202ENST00000338888 TOP2AP11388 1531 aaKnown RBP30.44■■■□□ 2.46
RUNX3-202ENST00000338888 CEP162Q5TB80 1403 aa30.41■■■□□ 2.46
RUNX3-202ENST00000338888 CCDC88BA6NC98 1476 aa30.31■■■□□ 2.44
RUNX3-202ENST00000338888 EIF4G1Q04637 1599 aaKnown RBP30.28■■■□□ 2.44
RUNX3-202ENST00000338888 SMARCA2P51531 1590 aa30.24■■■□□ 2.43
RUNX3-202ENST00000338888 TNIKQ9UKE5 1360 aa30.23■■■□□ 2.43
RUNX3-202ENST00000338888 ABCC8Q09428 1581 aa30.2■■■□□ 2.43
RUNX3-202ENST00000338888 ATAD2BQ9ULI0 1458 aa30.2■■■□□ 2.42
RUNX3-202ENST00000338888 PEG3Q9GZU2 1588 aa30.17■■■□□ 2.42
RUNX3-202ENST00000338888 UBTFP17480 764 aaKnown RBP30.16■■■□□ 2.42
RUNX3-202ENST00000338888 HNRNPUL2Q1KMD3 747 aaKnown RBP30.16■■■□□ 2.42
RUNX3-202ENST00000338888 SOGA1O94964 1423 aa30.15■■■□□ 2.42
RUNX3-202ENST00000338888 BAZ1BQ9UIG0 1483 aaKnown RBP30.08■■■□□ 2.41
RUNX3-202ENST00000338888 CSRNP3Q8WYN3 585 aa30.06■■■□□ 2.4
RUNX3-202ENST00000338888 RUSC2Q8N2Y8 1516 aa29.98■■■□□ 2.39
RUNX3-202ENST00000338888 SUPT16HQ9Y5B9 1047 aaKnown RBP29.93■■■□□ 2.38
RUNX3-202ENST00000338888 EEA1Q15075 1411 aa29.89■■■□□ 2.37
RUNX3-202ENST00000338888 GOLGA3Q08378 1498 aa29.85■■■□□ 2.37
RUNX3-202ENST00000338888 CLSPNQ9HAW4 1339 aa29.81■■■□□ 2.36
RUNX3-202ENST00000338888 NCAPD3P42695 1498 aa29.76■■■□□ 2.36
RUNX3-202ENST00000338888 TSHZ2Q9NRE2 1034 aa29.75■■■□□ 2.35
RUNX3-202ENST00000338888 ANP32EQ9BTT0 268 aa29.68■■■□□ 2.34
RUNX3-202ENST00000338888 HMGXB3Q12766 1538 aa29.67■■■□□ 2.34
RUNX3-202ENST00000338888 APLP2Q06481 763 aa29.65■■■□□ 2.34
RUNX3-202ENST00000338888 CLIP1P30622 1438 aa29.63■■■□□ 2.33
RUNX3-202ENST00000338888 VPS8Q8N3P4 1428 aa29.58■■■□□ 2.33
RUNX3-202ENST00000338888 CEP164Q9UPV0 1460 aa29.55■■■□□ 2.32
RUNX3-202ENST00000338888 RANGAP1P46060 587 aaPredicted RBP29.52■■■□□ 2.32
RUNX3-202ENST00000338888 CC2D2AQ9P2K1 1620 aa29.52■■■□□ 2.32
RUNX3-202ENST00000338888 DHX57Q6P158 1386 aaKnown RBP29.51■■■□□ 2.31
RUNX3-202ENST00000338888 BCL11AQ9H165 835 aa29.43■■■□□ 2.3
RUNX3-202ENST00000338888 KIF21BO75037 1637 aa29.43■■■□□ 2.3
RUNX3-202ENST00000338888 SYNJ1O43426 1573 aa29.42■■■□□ 2.3
RUNX3-202ENST00000338888 BCANQ96GW7 911 aa29.37■■■□□ 2.29
RUNX3-202ENST00000338888 KCNH8Q96L42 1107 aa29.36■■■□□ 2.29
RUNX3-202ENST00000338888 RAPGEF2Q9Y4G8 1499 aa29.31■■■□□ 2.28
RUNX3-202ENST00000338888 CFTRP13569 1480 aa29.27■■■□□ 2.28
RUNX3-202ENST00000338888 FKBP8Q14318 412 aa29.22■■■□□ 2.27
RUNX3-202ENST00000338888 KANK4Q5T7N3 995 aaPredicted RBP29.18■■■□□ 2.26
RUNX3-202ENST00000338888 CADPSQ9ULU8 1353 aa29.15■■■□□ 2.26
RUNX3-202ENST00000338888 TOP2BQ02880 1626 aa29.13■■■□□ 2.25
RUNX3-202ENST00000338888 RBM19Q9Y4C8 960 aaKnown RBP29.07■■■□□ 2.24
RUNX3-202ENST00000338888 CUX1P39880 1505 aa29.06■■■□□ 2.24
RUNX3-202ENST00000338888 DNAJC5BQ9UF47 199 aa29.05■■■□□ 2.24
RUNX3-202ENST00000338888 ITGAEP38570 1179 aa29.03■■■□□ 2.24
RUNX3-202ENST00000338888 BIVM-ERCC5R4GMW8 1640 aa29.02■■■□□ 2.24
RUNX3-202ENST00000338888 RRBP1Q9P2E9 1410 aaKnown RBP29■■■□□ 2.23
RUNX3-202ENST00000338888 DDX10Q13206 875 aaKnown RBP29■■■□□ 2.23
RUNX3-202ENST00000338888 ARAP1Q96P48 1450 aa28.99■■■□□ 2.23
RUNX3-202ENST00000338888 NEFLP07196 543 aa28.96■■■□□ 2.23
RUNX3-202ENST00000338888 CUX2O14529 1486 aa28.94■■■□□ 2.22
RUNX3-202ENST00000338888 NESP48681 1621 aa28.94■■■□□ 2.22
RUNX3-202ENST00000338888 PRDM2Q13029 1718 aa28.94■■■□□ 2.22
RUNX3-202ENST00000338888 CCNB3Q8WWL7 1395 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 733.4 ms