Protein–RNA interactions for Protein: Q8IVM0

CCDC50, Coiled-coil domain-containing protein 50, humanhuman

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC50Q8IVM0 CYP2J2-201ENST00000371204 1896 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 SPDYE16-203ENST00000633306 2591 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 CNBP-203ENST00000446936 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 CNBP-204ENST00000451728 1641 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 SMPDL3B-206ENST00000549094 1611 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 AC136604.1-202ENST00000425471 771 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 RPL13AP20-201ENST00000459725 609 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 CHCHD2P2-201ENST00000503744 321 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 AC106794.1-201ENST00000506935 792 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 RN7SL163P-201ENST00000583100 276 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 MIR4259-201ENST00000584466 101 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 AC005498.2-204ENST00000590613 413 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 TMEM211-203ENST00000640159 1122 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 AC004923.1-202ENST00000642106 209 ntBASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 POLD1-210ENST00000599857 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 GPA33-201ENST00000367868 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 ABCA3-202ENST00000382381 6446 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 TMC5-204ENST00000541464 3581 ntTSL 2 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 YTHDF3-201ENST00000517371 3122 ntTSL 3 BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 SPDYA-202ENST00000379579 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CCDC50Q8IVM0 GFAP-214ENST00000588735 6538 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 GDAP2-201ENST00000369442 2436 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 ARHGEF2-201ENST00000313667 2958 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PASK-203ENST00000403638 5161 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 ALG11-204ENST00000616513 1983 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 LINC00637-201ENST00000556586 2056 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 ALKBH5-201ENST00000399138 2748 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 MAP7-205ENST00000544465 2744 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 USO1-201ENST00000264904 4135 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 ZCCHC18-206ENST00000611638 2941 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 MARK2P16-201ENST00000605714 1723 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 GUCY1B3-205ENST00000505764 2456 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 BRD7P5-201ENST00000299197 1822 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 SLC4A5-205ENST00000394019 6348 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PAX8-204ENST00000397647 3633 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 KAZN-205ENST00000400798 3643 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 KRTAP21-2-201ENST00000333892 440 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 SNORA50C-201ENST00000408535 133 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PARVG-202ENST00000415224 999 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 AC011742.3-201ENST00000439053 820 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 FAM86HP-204ENST00000513466 959 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 CMC2-204ENST00000562713 573 ntTSL 3 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 CMC2-209ENST00000565108 399 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 MIR6805-201ENST00000615055 62 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 SNORA50.1-201ENST00000628590 135 ntBASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 MRVI1-201ENST00000423302 6126 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 FAM187A-201ENST00000331733 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 CCDC103-204ENST00000417826 3397 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 ZNF419-202ENST00000347466 3654 ntAPPRIS P3 TSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 PDE4C-204ENST00000539010 1699 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 KLF7-204ENST00000423015 1788 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 NKX2-1-AS1-201ENST00000521292 1775 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 TMEM260-201ENST00000261556 4264 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 LSM14A-201ENST00000433627 3424 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 RERG-201ENST00000256953 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 NUP54-201ENST00000264883 2367 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 MYRIP-203ENST00000425621 2981 ntTSL 2 BASIC14.67□□□□□ -0.06
CCDC50Q8IVM0 AC063926.2-201ENST00000623766 1308 ntBASIC14.66□□□□□ -0.06
CCDC50Q8IVM0 USP22-206ENST00000537526 4976 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC50Q8IVM0 MSNP1-201ENST00000511640 1732 ntBASIC14.66□□□□□ -0.06
CCDC50Q8IVM0 POC5-202ENST00000428202 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC50Q8IVM0 PPP1R8-202ENST00000311772 2344 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CCDC50Q8IVM0 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms